Wall clock time and date at job start Tue Mar 31 2020 05:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.89764 * 2 1 4 4 C 1.54001 * 109.91586 * 121.09025 * 2 1 3 5 5 H 1.09009 * 110.32713 * 359.35519 * 4 2 1 6 6 N 1.46898 * 110.41342 * 237.18521 * 4 2 1 7 7 C 1.48537 * 111.00186 * 60.47652 * 6 4 2 8 8 C 1.54937 * 103.22718 * 159.71833 * 7 6 4 9 9 C 1.54591 * 102.92457 * 322.58894 * 8 7 6 10 10 C 1.47908 * 110.99904 * 177.87385 * 6 4 2 11 11 C 1.54611 * 105.04454 * 118.24631 * 4 2 1 12 12 C 1.54940 * 102.84082 * 338.15384 * 11 4 2 13 13 N 1.47641 * 109.91256 * 238.81262 * 2 1 3 14 14 C 1.34777 * 127.11941 * 85.96614 * 13 2 1 15 15 O 1.21590 * 119.99595 * 359.80641 * 14 13 2 16 16 N 1.34774 * 120.00381 * 179.80513 * 14 13 2 17 17 C 1.46501 * 119.99999 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46771 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00156 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99764 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99735 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99974 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46862 * 60.00396 * 22 20 18 24 24 H 1.48502 * 109.46755 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46964 * 300.00269 * 22 20 18 26 26 H 1.09003 * 109.47176 * 298.90514 * 1 2 3 27 27 H 1.09000 * 109.47260 * 58.90771 * 1 2 3 28 28 H 1.09004 * 109.46776 * 178.91353 * 1 2 3 29 29 H 1.08994 * 110.67121 * 278.15573 * 7 6 4 30 30 H 1.09005 * 110.66404 * 41.28545 * 7 6 4 31 31 H 1.08998 * 110.72603 * 204.22913 * 8 7 6 32 32 H 1.09003 * 110.72262 * 80.94849 * 8 7 6 33 33 H 1.09001 * 110.31119 * 263.04221 * 9 8 7 34 34 H 1.08998 * 110.31154 * 140.87063 * 9 8 7 35 35 H 1.08994 * 109.91917 * 333.50707 * 10 6 4 36 36 H 1.08997 * 109.91455 * 94.60911 * 10 6 4 37 37 H 1.09003 * 110.74232 * 219.81205 * 11 4 2 38 38 H 1.09003 * 110.73622 * 96.48849 * 11 4 2 39 39 H 1.09002 * 110.66471 * 155.81747 * 12 11 4 40 40 H 1.08998 * 110.66195 * 278.77008 * 12 11 4 41 41 H 0.96999 * 119.99557 * 359.97438 * 16 14 13 42 42 H 1.08999 * 109.47350 * 299.99996 * 17 16 14 43 43 H 1.09001 * 109.46866 * 60.00458 * 17 16 14 44 44 H 0.97006 * 119.99907 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0250 0.0000 4 6 2.0546 -0.7477 1.2399 5 1 1.2226 -1.1015 1.8489 6 7 2.9306 0.1256 2.0323 7 6 2.1979 1.3289 2.5031 8 6 3.0554 1.8222 3.6955 9 6 3.5176 0.5040 4.3577 10 6 3.4015 -0.5632 3.2535 11 6 2.8557 -1.9446 0.6777 12 6 2.2692 -2.1129 -0.7465 13 7 2.0329 -0.7188 -1.1875 14 6 2.2388 -0.2111 -2.4189 15 8 2.0003 0.9603 -2.6411 16 7 2.7090 -1.0017 -3.4039 17 6 2.9323 -0.4498 -4.7425 18 6 3.4569 -1.5319 -5.6508 19 1 3.6084 -2.5308 -5.2693 20 6 3.7425 -1.2468 -6.9692 21 7 3.5575 -0.0305 -7.4339 22 14 4.3920 -2.5882 -8.0954 23 1 3.4013 -3.6916 -8.1734 24 1 4.6184 -2.0287 -9.4522 25 1 5.6731 -3.1104 -7.5555 26 1 -0.3634 0.4967 0.8997 27 1 -0.3634 0.5307 -0.8800 28 1 -0.3633 -1.0275 -0.0195 29 1 2.1570 2.0855 1.7196 30 1 1.1943 1.0628 2.8350 31 1 2.4524 2.4105 4.3870 32 1 3.9115 2.3976 3.3429 33 1 2.8673 0.2533 5.1958 34 1 4.5512 0.5909 4.6926 35 1 2.6826 -1.3271 3.5496 36 1 4.3742 -1.0198 3.0706 37 1 2.6823 -2.8398 1.2749 38 1 3.9191 -1.7099 0.6319 39 1 2.9863 -2.6074 -1.4018 40 1 1.3328 -2.6698 -0.7135 41 1 2.8996 -1.9360 -3.2265 42 1 1.9922 -0.0663 -5.1389 43 1 3.6597 0.3600 -4.6849 44 1 3.7581 0.1700 -8.3616 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334899061.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:35 Heat of formation + Delta-G solvation = -21.900173 kcal Electronic energy + Delta-G solvation = -22757.118711 eV Core-core repulsion = 19516.220501 eV Total energy + Delta-G solvation = -3240.898210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27016 -38.73928 -36.83321 -34.09221 -32.64251 -32.00261 -31.19244 -29.43020 -28.93304 -26.87254 -25.35663 -23.23669 -22.18712 -21.70181 -20.85545 -20.12760 -18.97796 -17.91185 -16.69966 -16.21637 -15.82937 -15.55480 -14.99320 -14.56436 -14.16767 -14.06065 -13.68543 -13.43493 -13.18072 -12.98620 -12.86904 -12.64582 -12.33083 -12.16208 -11.89848 -11.70818 -11.59570 -11.47474 -11.26027 -11.20096 -10.94250 -10.91542 -10.83788 -10.83067 -10.53507 -10.25000 -9.33675 -9.30468 -8.67772 -8.58121 -8.35190 -7.65343 -6.10787 -4.17220 3.16256 3.28780 3.33479 3.35623 3.75137 4.00159 4.27644 4.36010 4.42283 4.54584 4.67717 4.73966 4.96686 5.03506 5.07320 5.23296 5.25053 5.26773 5.35382 5.39957 5.44841 5.51512 5.55082 5.58157 5.63936 5.68367 5.76022 5.79647 5.87845 5.95719 6.06806 6.12594 6.27534 6.60965 6.70787 6.94188 7.27940 7.57944 7.63333 7.65808 7.96810 8.09706 8.81769 8.98595 9.40014 9.54890 10.99495 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030817 B = 0.003389 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.360248 B = 8261.075712 C = 8440.929636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 H 0.090 0.910 4 C 0.067 3.933 5 H 0.057 0.943 6 N -0.508 5.508 7 C 0.031 3.969 8 C -0.123 4.123 9 C -0.131 4.131 10 C 0.037 3.963 11 C -0.124 4.124 12 C 0.103 3.897 13 N -0.639 5.639 14 C 0.717 3.283 15 O -0.597 6.597 16 N -0.728 5.728 17 C 0.268 3.732 18 C -0.541 4.541 19 H 0.061 0.939 20 C 0.064 3.936 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.385 0.615 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.021 -3.574 24.041 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.053 3.947 3 H 0.108 0.892 4 C -0.042 4.042 5 H 0.075 0.925 6 N -0.232 5.232 7 C -0.096 4.096 8 C -0.162 4.162 9 C -0.169 4.169 10 C -0.090 4.090 11 C -0.163 4.163 12 C -0.021 4.021 13 N -0.379 5.379 14 C 0.419 3.581 15 O -0.476 6.476 16 N -0.380 5.380 17 C 0.147 3.853 18 C -0.580 4.580 19 H 0.079 0.921 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.218 0.782 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.715 -2.390 23.166 23.447 hybrid contribution -0.274 -1.472 -0.085 1.500 sum -2.988 -3.862 23.081 23.592 Atomic orbital electron populations 1.22187 0.95469 1.01945 1.02221 1.21265 0.92978 0.97460 0.82968 0.89230 1.22812 0.93964 0.93238 0.94195 0.92518 1.64854 1.34825 1.05927 1.17628 1.23284 0.95549 0.93523 0.97287 1.22473 1.00020 0.97063 0.96601 1.22399 1.01913 0.95054 0.97560 1.22831 1.00893 0.96085 0.89233 1.22761 1.01250 0.96641 0.95653 1.22354 0.99989 0.84848 0.94930 1.47917 1.70898 1.10329 1.08722 1.15594 0.78688 0.84971 0.78844 1.90868 1.59738 1.15638 1.81337 1.45719 1.68234 1.12487 1.11568 1.18970 0.96771 0.94484 0.75071 1.21188 1.45459 0.96130 0.95190 0.92074 1.24940 0.95357 0.95805 0.97898 1.69975 1.47328 1.19165 1.15848 0.86475 0.79355 0.81490 0.79567 1.20112 1.21088 1.20089 0.92323 0.91554 0.92615 0.89592 0.93671 0.91132 0.90600 0.91685 0.91036 0.93881 0.90307 0.90651 0.89601 0.90266 0.91613 0.78226 0.95790 0.95763 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.30 37.16 0.35 -1.66 16 2 C 0.16 2.26 2.68 -66.78 -0.18 2.08 16 3 H 0.09 1.49 6.56 -51.93 -0.34 1.15 16 4 C 0.07 0.74 2.05 -66.35 -0.14 0.60 16 5 H 0.06 0.55 7.55 -51.92 -0.39 0.16 16 6 N -0.51 -5.54 5.03 -220.86 -1.11 -6.65 16 7 C 0.03 0.30 5.75 -1.90 -0.01 0.29 16 8 C -0.12 -0.99 7.06 -24.87 -0.18 -1.17 16 9 C -0.13 -0.96 6.93 -25.37 -0.18 -1.14 16 10 C 0.04 0.32 6.12 -2.75 -0.02 0.31 16 11 C -0.12 -1.30 6.15 -24.86 -0.15 -1.45 16 12 C 0.10 1.29 6.92 -2.13 -0.01 1.27 16 13 N -0.64 -10.77 2.93 -167.83 -0.49 -11.26 16 14 C 0.72 16.02 8.54 -86.92 -0.74 15.28 16 15 O -0.60 -15.84 16.69 5.29 0.09 -15.75 16 16 N -0.73 -16.59 5.52 -66.41 -0.37 -16.96 16 17 C 0.27 7.44 5.43 -5.19 -0.03 7.41 16 18 C -0.54 -15.10 9.28 -34.44 -0.32 -15.42 16 19 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 21 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 22 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.94 7.23 -51.93 -0.38 0.56 16 30 H 0.04 0.40 8.02 -51.93 -0.42 -0.02 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.04 0.34 7.68 -51.93 -0.40 -0.06 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.00 8.06 -51.93 -0.42 0.59 16 39 H 0.08 0.97 6.82 -51.93 -0.35 0.62 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.38 7.63 6.65 -40.82 -0.27 7.36 16 42 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 348.17 15.07 5.25 5.25 Total: -1.00 -33.48 348.17 -10.20 -43.68 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.57 Total: 3.31 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -1.70 Total: 8.11 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -1.23 Total: -60.76 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.09 Total: -15.75 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.48 -10.20 -43.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334899061.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.781 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds