Wall clock time and date at job start Tue Mar 31 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.87462 * 2 1 4 4 C 1.54325 * 109.87988 * 121.17115 * 2 1 3 5 5 H 1.09000 * 110.71992 * 215.76512 * 4 2 1 6 6 N 1.46900 * 110.72429 * 338.86348 * 4 2 1 7 7 C 1.48533 * 110.99862 * 170.00212 * 6 4 2 8 8 C 1.54937 * 103.22277 * 159.72319 * 7 6 4 9 9 C 1.54594 * 102.92100 * 322.58429 * 8 7 6 10 10 C 1.47898 * 111.00025 * 287.40320 * 6 4 2 11 11 C 1.55165 * 102.93869 * 97.22767 * 4 2 1 12 12 C 1.54685 * 101.67782 * 35.33392 * 11 4 2 13 13 N 1.47019 * 109.88267 * 238.98138 * 2 1 3 14 14 C 1.34776 * 125.64734 * 59.48812 * 13 2 1 15 15 O 1.21588 * 119.99999 * 0.02562 * 14 13 2 16 16 N 1.34772 * 120.00188 * 180.27419 * 14 13 2 17 17 C 1.46500 * 120.00569 * 179.72440 * 16 14 13 18 18 C 1.50690 * 109.47563 * 180.02562 * 17 16 14 19 19 H 1.08008 * 120.00330 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00425 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99284 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00364 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47503 * 89.99441 * 22 20 18 24 24 H 1.48498 * 109.47114 * 209.99758 * 22 20 18 25 25 H 1.48510 * 109.46934 * 329.99357 * 22 20 18 26 26 H 1.08998 * 109.47336 * 187.67216 * 1 2 3 27 27 H 1.09001 * 109.47218 * 307.67508 * 1 2 3 28 28 H 1.09002 * 109.47202 * 67.67385 * 1 2 3 29 29 H 1.08999 * 110.66938 * 278.15378 * 7 6 4 30 30 H 1.09001 * 110.66615 * 41.29085 * 7 6 4 31 31 H 1.09003 * 110.72280 * 204.22989 * 8 7 6 32 32 H 1.08995 * 110.72768 * 80.94338 * 8 7 6 33 33 H 1.09001 * 110.31076 * 263.04391 * 9 8 7 34 34 H 1.09007 * 110.30547 * 140.87928 * 9 8 7 35 35 H 1.08998 * 109.91490 * 333.50440 * 10 6 4 36 36 H 1.08993 * 109.91752 * 94.79977 * 10 6 4 37 37 H 1.09000 * 111.00666 * 153.57753 * 11 4 2 38 38 H 1.08997 * 111.00121 * 277.38790 * 11 4 2 39 39 H 1.08996 * 110.39321 * 204.36477 * 12 11 4 40 40 H 1.09003 * 110.23639 * 82.11201 * 12 11 4 41 41 H 0.97007 * 120.00038 * 359.72620 * 16 14 13 42 42 H 1.08997 * 109.47072 * 300.00503 * 17 16 14 43 43 H 1.09008 * 109.46821 * 59.99600 * 17 16 14 44 44 H 0.97001 * 119.99605 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7512 1.2418 5 1 2.9639 -0.2835 1.6198 6 7 1.0264 -0.8059 2.2893 7 6 1.4304 -1.7246 3.3843 8 6 0.5498 -1.2667 4.5741 9 6 0.5106 0.2693 4.4042 10 6 0.8426 0.5186 2.9213 11 6 2.3519 -2.1704 0.6894 12 6 2.8523 -1.8520 -0.7392 13 7 2.0300 -0.7125 -1.1848 14 6 1.7742 -0.3819 -2.4662 15 8 1.0752 0.5806 -2.7178 16 7 2.2891 -1.1212 -3.4685 17 6 2.0062 -0.7656 -4.8612 18 6 2.6939 -1.7430 -5.7790 19 1 3.2832 -2.5486 -5.3663 20 6 2.5717 -1.6086 -7.1458 21 7 1.8544 -0.6275 -7.6484 22 14 3.4235 -2.8207 -8.2835 23 1 2.5134 -3.9602 -8.5638 24 1 3.7738 -2.1421 -9.5570 25 1 4.6608 -3.3236 -7.6340 26 1 -0.3634 -1.0184 0.1372 27 1 -0.3634 0.6281 0.8134 28 1 -0.3634 0.3904 -0.9506 29 1 1.2113 -2.7589 3.1192 30 1 2.4878 -1.6020 3.6188 31 1 1.0122 -1.5382 5.5231 32 1 -0.4522 -1.6889 4.4973 33 1 1.2577 0.7398 5.0434 34 1 -0.4833 0.6507 4.6387 35 1 1.7610 1.0999 2.8391 36 1 0.0204 1.0485 2.4406 37 1 3.1270 -2.6637 1.2760 38 1 1.4453 -2.7747 0.6572 39 1 2.6998 -2.7092 -1.3949 40 1 3.9059 -1.5736 -0.7163 41 1 2.8471 -1.8889 -3.2678 42 1 0.9306 -0.8006 -5.0338 43 1 2.3735 0.2412 -5.0609 44 1 1.7681 -0.5331 -8.6100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334899064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:37 Heat of formation + Delta-G solvation = -18.061586 kcal Electronic energy + Delta-G solvation = -22771.315144 eV Core-core repulsion = 19530.583387 eV Total energy + Delta-G solvation = -3240.731757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.35631 -38.81938 -36.77967 -34.12578 -32.74504 -32.00837 -31.18574 -29.22567 -28.89864 -26.82492 -25.38451 -23.26615 -22.35408 -21.74507 -20.87837 -19.91367 -18.96728 -17.89614 -16.60555 -16.20057 -15.97519 -15.36318 -15.20720 -14.59526 -14.49868 -14.20262 -13.64894 -13.38955 -13.14664 -13.04027 -12.71421 -12.37172 -12.23055 -12.09004 -11.89555 -11.81529 -11.62179 -11.49574 -11.29394 -11.12502 -10.92760 -10.88389 -10.84780 -10.68613 -10.45331 -10.25295 -9.32798 -9.23870 -8.68421 -8.63025 -8.30019 -7.65444 -6.11739 -4.18014 3.13975 3.27060 3.33154 3.35880 3.76785 4.01422 4.21805 4.34981 4.38223 4.55422 4.62038 4.69304 4.95676 4.99024 5.02543 5.21382 5.23904 5.24318 5.35285 5.36411 5.51506 5.53566 5.59563 5.64846 5.69867 5.70154 5.76155 5.81011 5.88935 6.03686 6.14327 6.38267 6.60145 6.63652 6.85045 6.87600 7.27699 7.57577 7.62542 7.65013 7.95217 8.08462 8.81166 8.97932 9.39387 9.54219 10.98602 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.043355 B = 0.003232 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.670964 B = 8660.601236 C = 9112.979195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.167 3.833 3 H 0.064 0.936 4 C 0.066 3.934 5 H 0.057 0.943 6 N -0.501 5.501 7 C 0.036 3.964 8 C -0.123 4.123 9 C -0.131 4.131 10 C 0.030 3.970 11 C -0.122 4.122 12 C 0.102 3.898 13 N -0.640 5.640 14 C 0.713 3.287 15 O -0.595 6.595 16 N -0.728 5.728 17 C 0.268 3.732 18 C -0.540 4.540 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.385 0.615 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 -2.916 25.063 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.062 3.938 3 H 0.082 0.918 4 C -0.044 4.044 5 H 0.075 0.925 6 N -0.225 5.225 7 C -0.092 4.092 8 C -0.162 4.162 9 C -0.169 4.169 10 C -0.097 4.097 11 C -0.160 4.160 12 C -0.022 4.022 13 N -0.381 5.381 14 C 0.415 3.585 15 O -0.473 6.473 16 N -0.380 5.380 17 C 0.147 3.853 18 C -0.579 4.579 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.218 0.782 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.074 -2.244 24.267 24.371 hybrid contribution 1.584 -0.696 -0.252 1.748 sum 1.510 -2.940 24.015 24.242 Atomic orbital electron populations 1.22004 0.94029 1.02319 1.02093 1.21109 0.95573 0.94546 0.82597 0.91821 1.22874 0.92585 0.96788 0.92119 0.92523 1.64783 1.41286 1.07212 1.09216 1.23208 0.97407 0.97950 0.90631 1.22471 1.00707 0.95384 0.97590 1.22406 1.02106 0.96514 0.95923 1.23002 1.01363 0.91464 0.93916 1.22785 1.02055 0.95990 0.95208 1.22113 0.94974 0.89995 0.95105 1.47641 1.54804 1.31588 1.04068 1.15643 0.80784 0.83142 0.78918 1.90855 1.43647 1.30415 1.82420 1.45740 1.53641 1.31437 1.07227 1.18969 0.96776 0.96277 0.73322 1.21223 1.32293 1.13157 0.91220 0.92035 1.24946 0.95288 0.95760 0.98049 1.69987 1.39032 1.30486 1.12800 0.86416 0.79686 0.80774 0.80016 1.20487 1.21029 1.19794 0.92342 0.92199 0.91510 0.89878 0.93837 0.91231 0.90679 0.91692 0.90998 0.93695 0.89616 0.90373 0.89567 0.90643 0.91936 0.78231 0.95765 0.95785 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.31 37.16 0.31 -1.90 16 2 C 0.17 2.42 3.19 -66.95 -0.21 2.21 16 3 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 4 C 0.07 0.71 2.27 -65.87 -0.15 0.56 16 5 H 0.06 0.58 7.88 -51.93 -0.41 0.17 16 6 N -0.50 -4.84 3.94 -220.32 -0.87 -5.70 16 7 C 0.04 0.27 5.74 -1.90 -0.01 0.26 16 8 C -0.12 -0.82 7.06 -24.87 -0.18 -1.00 16 9 C -0.13 -0.91 6.93 -25.38 -0.18 -1.08 16 10 C 0.03 0.26 5.86 -2.76 -0.02 0.25 16 11 C -0.12 -1.21 5.67 -24.70 -0.14 -1.35 16 12 C 0.10 1.28 6.56 -2.65 -0.02 1.26 16 13 N -0.64 -10.75 3.08 -168.83 -0.52 -11.27 16 14 C 0.71 15.77 8.26 -86.92 -0.72 15.05 16 15 O -0.59 -15.50 15.15 5.29 0.08 -15.42 16 16 N -0.73 -16.49 5.51 -66.42 -0.37 -16.85 16 17 C 0.27 7.39 5.43 -5.20 -0.03 7.36 16 18 C -0.54 -15.03 9.28 -34.44 -0.32 -15.35 16 19 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 22 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 26 H 0.06 0.88 8.03 -51.93 -0.42 0.47 16 27 H 0.06 0.78 5.41 -51.93 -0.28 0.50 16 28 H 0.07 1.25 6.52 -51.93 -0.34 0.91 16 29 H 0.08 0.62 7.99 -51.93 -0.41 0.20 16 30 H 0.04 0.32 8.02 -51.93 -0.42 -0.10 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 35 H 0.04 0.39 7.60 -51.93 -0.39 0.00 16 36 H 0.09 0.80 6.14 -51.93 -0.32 0.48 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.93 7.30 -51.93 -0.38 0.55 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.39 7.59 6.80 -40.82 -0.28 7.32 16 42 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.02 0.73 8.14 -51.92 -0.42 0.31 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 340.83 15.07 5.14 5.14 Total: -1.00 -32.90 340.83 -9.98 -42.89 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.41 Total: 2.97 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -1.75 Total: 7.96 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -1.02 Total: -59.66 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.08 Total: -15.42 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.90 -9.98 -42.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334899064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.824 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds