Wall clock time and date at job start Tue Mar 31 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.87462 * 2 1 4 4 C 1.54325 * 109.87988 * 121.17115 * 2 1 3 5 5 H 1.09000 * 110.71992 * 215.76512 * 4 2 1 6 6 N 1.46900 * 110.72429 * 338.86348 * 4 2 1 7 7 C 1.48533 * 110.99862 * 170.00212 * 6 4 2 8 8 C 1.54937 * 103.22277 * 159.72319 * 7 6 4 9 9 C 1.54594 * 102.92100 * 322.58429 * 8 7 6 10 10 C 1.47898 * 111.00025 * 287.40320 * 6 4 2 11 11 C 1.55165 * 102.93869 * 97.22767 * 4 2 1 12 12 C 1.54685 * 101.67782 * 35.33392 * 11 4 2 13 13 N 1.47019 * 109.88267 * 238.98138 * 2 1 3 14 14 C 1.34776 * 125.64734 * 59.48812 * 13 2 1 15 15 O 1.21588 * 119.99999 * 0.02562 * 14 13 2 16 16 N 1.34772 * 120.00188 * 180.27419 * 14 13 2 17 17 C 1.46500 * 120.00569 * 179.72440 * 16 14 13 18 18 C 1.50690 * 109.47563 * 180.02562 * 17 16 14 19 19 H 1.08008 * 120.00330 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00425 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99284 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00364 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47503 * 89.99441 * 22 20 18 24 24 H 1.48498 * 109.47114 * 209.99758 * 22 20 18 25 25 H 1.48510 * 109.46934 * 329.99357 * 22 20 18 26 26 H 1.08998 * 109.47336 * 187.67216 * 1 2 3 27 27 H 1.09001 * 109.47218 * 307.67508 * 1 2 3 28 28 H 1.09002 * 109.47202 * 67.67385 * 1 2 3 29 29 H 1.08999 * 110.66938 * 278.15378 * 7 6 4 30 30 H 1.09001 * 110.66615 * 41.29085 * 7 6 4 31 31 H 1.09003 * 110.72280 * 204.22989 * 8 7 6 32 32 H 1.08995 * 110.72768 * 80.94338 * 8 7 6 33 33 H 1.09001 * 110.31076 * 263.04391 * 9 8 7 34 34 H 1.09007 * 110.30547 * 140.87928 * 9 8 7 35 35 H 1.08998 * 109.91490 * 333.50440 * 10 6 4 36 36 H 1.08993 * 109.91752 * 94.79977 * 10 6 4 37 37 H 1.09000 * 111.00666 * 153.57753 * 11 4 2 38 38 H 1.08997 * 111.00121 * 277.38790 * 11 4 2 39 39 H 1.08996 * 110.39321 * 204.36477 * 12 11 4 40 40 H 1.09003 * 110.23639 * 82.11201 * 12 11 4 41 41 H 0.97007 * 120.00038 * 359.72620 * 16 14 13 42 42 H 1.08997 * 109.47072 * 300.00503 * 17 16 14 43 43 H 1.09008 * 109.46821 * 59.99600 * 17 16 14 44 44 H 0.97001 * 119.99605 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7512 1.2418 5 1 2.9639 -0.2835 1.6198 6 7 1.0264 -0.8059 2.2893 7 6 1.4304 -1.7246 3.3843 8 6 0.5498 -1.2667 4.5741 9 6 0.5106 0.2693 4.4042 10 6 0.8426 0.5186 2.9213 11 6 2.3519 -2.1704 0.6894 12 6 2.8523 -1.8520 -0.7392 13 7 2.0300 -0.7125 -1.1848 14 6 1.7742 -0.3819 -2.4662 15 8 1.0752 0.5806 -2.7178 16 7 2.2891 -1.1212 -3.4685 17 6 2.0062 -0.7656 -4.8612 18 6 2.6939 -1.7430 -5.7790 19 1 3.2832 -2.5486 -5.3663 20 6 2.5717 -1.6086 -7.1458 21 7 1.8544 -0.6275 -7.6484 22 14 3.4235 -2.8207 -8.2835 23 1 2.5134 -3.9602 -8.5638 24 1 3.7738 -2.1421 -9.5570 25 1 4.6608 -3.3236 -7.6340 26 1 -0.3634 -1.0184 0.1372 27 1 -0.3634 0.6281 0.8134 28 1 -0.3634 0.3904 -0.9506 29 1 1.2113 -2.7589 3.1192 30 1 2.4878 -1.6020 3.6188 31 1 1.0122 -1.5382 5.5231 32 1 -0.4522 -1.6889 4.4973 33 1 1.2577 0.7398 5.0434 34 1 -0.4833 0.6507 4.6387 35 1 1.7610 1.0999 2.8391 36 1 0.0204 1.0485 2.4406 37 1 3.1270 -2.6637 1.2760 38 1 1.4453 -2.7747 0.6572 39 1 2.6998 -2.7092 -1.3949 40 1 3.9059 -1.5736 -0.7163 41 1 2.8471 -1.8889 -3.2678 42 1 0.9306 -0.8006 -5.0338 43 1 2.3735 0.2412 -5.0609 44 1 1.7681 -0.5331 -8.6100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334899064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:37 Heat of formation + Delta-G solvation = -41.136235 kcal Electronic energy + Delta-G solvation = -22772.315735 eV Core-core repulsion = 19530.583387 eV Total energy + Delta-G solvation = -3241.732349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.57255 -40.04253 -37.98236 -36.15663 -34.50231 -33.33997 -32.29526 -30.40717 -29.56122 -28.77493 -26.42997 -25.01864 -23.70571 -22.69151 -21.64400 -21.00645 -20.47836 -19.38943 -18.08781 -17.49527 -17.06954 -16.84300 -16.57348 -16.31765 -15.79429 -15.14243 -14.93617 -14.66584 -14.56063 -14.05753 -13.95534 -13.86658 -13.64559 -13.27347 -13.20242 -12.99037 -12.90796 -12.70910 -12.65047 -12.21879 -12.16370 -11.99051 -11.95146 -11.73946 -11.54146 -11.47623 -11.32270 -11.07128 -10.80202 -10.04084 -9.40423 -9.33559 -8.28539 -6.45484 1.42887 1.46512 1.57102 1.69876 2.22304 2.38657 3.00009 3.06235 3.21870 3.44686 3.61025 3.79654 4.01205 4.07053 4.13226 4.26073 4.35465 4.42838 4.51119 4.56126 4.63858 4.70133 4.77142 4.82232 4.93003 5.00089 5.01869 5.05000 5.12186 5.15734 5.18113 5.25685 5.27067 5.36542 5.42880 5.44830 5.55530 5.73649 5.84797 5.98990 6.11394 6.23988 6.66107 7.19383 7.24823 7.71472 8.84094 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.043355 B = 0.003232 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.670964 B = 8660.601236 C = 9112.979195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.158 3.842 3 H 0.049 0.951 4 C 0.080 3.920 5 H 0.071 0.929 6 N -0.515 5.515 7 C 0.036 3.964 8 C -0.120 4.120 9 C -0.128 4.128 10 C 0.026 3.974 11 C -0.108 4.108 12 C 0.092 3.908 13 N -0.634 5.634 14 C 0.707 3.293 15 O -0.644 6.644 16 N -0.722 5.722 17 C 0.288 3.712 18 C -0.555 4.555 19 H 0.083 0.917 20 C 0.003 3.997 21 N -0.932 5.932 22 Si 0.988 3.012 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.254 1.254 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.021 0.979 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.402 0.598 42 H -0.017 1.017 43 H -0.016 1.016 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 -5.468 27.232 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 H 0.068 0.932 4 C -0.030 4.030 5 H 0.089 0.911 6 N -0.239 5.239 7 C -0.091 4.091 8 C -0.158 4.158 9 C -0.166 4.166 10 C -0.101 4.101 11 C -0.146 4.146 12 C -0.031 4.031 13 N -0.373 5.373 14 C 0.409 3.591 15 O -0.527 6.527 16 N -0.376 5.376 17 C 0.165 3.835 18 C -0.592 4.592 19 H 0.101 0.899 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.811 3.189 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.178 1.178 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.040 0.960 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.133 0.867 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.237 0.763 42 H 0.001 0.999 43 H 0.002 0.998 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.935 -4.843 26.531 27.038 hybrid contribution 0.913 0.168 -0.830 1.245 sum 2.847 -4.675 25.701 26.277 Atomic orbital electron populations 1.21860 0.94724 1.02278 1.00282 1.21344 0.95086 0.94589 0.83630 0.93248 1.22722 0.93015 0.96659 0.90567 0.91134 1.64736 1.41164 1.08058 1.09974 1.23284 0.98229 0.97596 0.90020 1.22472 1.00479 0.94833 0.98036 1.22393 1.02584 0.97040 0.94576 1.23020 1.00892 0.91087 0.95136 1.22770 1.02937 0.95415 0.93464 1.22505 0.95341 0.88380 0.96848 1.47606 1.54389 1.32749 1.02586 1.15819 0.80313 0.82478 0.80484 1.90816 1.45642 1.32500 1.83721 1.45326 1.54300 1.32267 1.05694 1.18393 0.94117 0.94740 0.76287 1.21576 1.32511 1.13500 0.91647 0.89882 1.26102 0.95755 0.97752 1.00034 1.70157 1.40609 1.32774 1.13463 0.85110 0.78920 0.77763 0.77118 1.19529 1.20876 1.17799 0.92330 0.90265 0.96004 0.89350 0.92712 0.89515 0.91168 0.90597 0.90819 0.93693 0.90950 0.86661 0.90005 0.90241 0.90012 0.76254 0.99899 0.99813 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 8.31 71.98 0.60 -3.55 16 2 C 0.16 4.57 3.19 45.34 0.14 4.71 16 3 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 4 C 0.08 1.52 2.27 46.11 0.10 1.63 16 5 H 0.07 1.20 7.88 -2.39 -0.02 1.18 16 6 N -0.51 -8.76 3.94 -850.95 -3.35 -12.11 16 7 C 0.04 0.42 5.74 86.65 0.50 0.92 16 8 C -0.12 -1.23 7.06 31.80 0.22 -1.01 16 9 C -0.13 -1.46 6.93 31.47 0.22 -1.25 16 10 C 0.03 0.42 5.86 86.45 0.51 0.92 16 11 C -0.11 -1.77 5.67 31.91 0.18 -1.58 16 12 C 0.09 2.08 6.56 86.78 0.57 2.65 16 13 N -0.63 -21.35 3.08 -806.33 -2.49 -23.83 16 14 C 0.71 32.59 8.26 179.06 1.48 34.07 16 15 O -0.64 -35.92 15.15 -3.99 -0.06 -35.98 16 16 N -0.72 -33.68 5.51 -482.31 -2.66 -36.33 16 17 C 0.29 16.73 5.43 85.63 0.46 17.19 16 18 C -0.55 -31.16 9.28 25.60 0.24 -30.92 16 19 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 20 C 0.00 0.17 5.46 84.65 0.46 0.64 16 21 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 22 Si 0.99 42.98 29.54 68.60 2.03 45.00 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 25 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 26 H 0.06 1.78 8.03 -2.39 -0.02 1.76 16 27 H 0.08 2.10 5.41 -2.39 -0.01 2.09 16 28 H 0.02 0.86 6.52 -2.39 -0.02 0.84 16 29 H 0.09 0.98 7.99 -2.39 -0.02 0.96 16 30 H 0.05 0.55 8.02 -2.39 -0.02 0.54 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.04 0.71 7.60 -2.39 -0.02 0.69 16 36 H 0.07 1.32 6.14 -2.39 -0.01 1.30 16 37 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.76 7.30 -2.39 -0.02 1.75 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.40 15.72 6.80 -92.70 -0.63 15.09 16 42 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 43 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 44 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -76.01 340.83 -0.21 -76.21 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.35 Total: 19.87 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 5.69 Total: 24.42 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -8.21 Total: -129.53 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -0.06 Total: -35.98 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -76.01 -0.21 -76.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334899064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.078 kcal (2) G-P(sol) polarization free energy of solvation -76.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds