Wall clock time and date at job start Tue Mar 31 2020 05:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.99970 * 2 1 4 4 C 1.54310 * 109.98954 * 238.96671 * 2 1 3 5 5 H 1.09003 * 110.92636 * 144.63284 * 4 2 1 6 6 N 1.46904 * 110.59195 * 21.31048 * 4 2 1 7 7 C 1.48535 * 110.99999 * 74.13386 * 6 4 2 8 8 C 1.54930 * 103.22538 * 159.72465 * 7 6 4 9 9 C 1.54595 * 102.92360 * 322.58706 * 8 7 6 10 10 C 1.47899 * 111.00248 * 191.53492 * 6 4 2 11 11 C 1.55159 * 102.86777 * 263.05061 * 4 2 1 12 12 C 1.54912 * 101.57794 * 324.30151 * 11 4 2 13 13 N 1.47028 * 109.88100 * 121.09354 * 2 1 3 14 14 C 1.34783 * 125.64624 * 300.51574 * 13 2 1 15 15 O 1.21585 * 119.99996 * 359.71216 * 14 13 2 16 16 N 1.34775 * 119.99745 * 179.71801 * 14 13 2 17 17 C 1.46503 * 119.99765 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.46860 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99997 * 359.72274 * 18 17 16 20 20 C 1.37874 * 119.99834 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00157 * 359.71789 * 20 18 17 22 22 Si 1.86804 * 120.00326 * 179.72751 * 20 18 17 23 23 H 1.48499 * 109.47095 * 59.99270 * 22 20 18 24 24 H 1.48501 * 109.47130 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46451 * 299.99684 * 22 20 18 26 26 H 1.09003 * 109.47115 * 292.05622 * 1 2 3 27 27 H 1.08997 * 109.47053 * 52.05521 * 1 2 3 28 28 H 1.09007 * 109.47011 * 172.05270 * 1 2 3 29 29 H 1.09001 * 110.66936 * 278.16048 * 7 6 4 30 30 H 1.09003 * 110.66517 * 41.29010 * 7 6 4 31 31 H 1.09003 * 110.72451 * 204.22596 * 8 7 6 32 32 H 1.09007 * 110.88057 * 81.01866 * 8 7 6 33 33 H 1.08999 * 110.31092 * 263.03902 * 9 8 7 34 34 H 1.09003 * 110.39039 * 140.91531 * 9 8 7 35 35 H 1.08992 * 109.91587 * 333.50549 * 10 6 4 36 36 H 1.08997 * 109.91763 * 94.60452 * 10 6 4 37 37 H 1.08997 * 111.00532 * 206.23273 * 11 4 2 38 38 H 1.09002 * 111.00325 * 82.37226 * 11 4 2 39 39 H 1.08999 * 110.36562 * 278.16909 * 12 11 4 40 40 H 1.08998 * 110.46080 * 155.89251 * 12 11 4 41 41 H 0.96996 * 119.99768 * 0.02562 * 16 14 13 42 42 H 1.09003 * 109.46978 * 60.00018 * 17 16 14 43 43 H 1.08994 * 109.47372 * 300.00219 * 17 16 14 44 44 H 0.96996 * 120.00439 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0575 -0.7476 -1.2426 5 1 2.9708 -0.2849 -1.6167 6 7 1.0302 -0.7955 -2.2915 7 6 0.8754 0.5290 -2.9459 8 6 0.1998 0.1806 -4.2959 9 6 0.8782 -1.1519 -4.6883 10 6 1.4147 -1.7344 -3.3676 11 6 2.3476 -2.1693 -0.6931 12 6 2.8523 -1.8530 0.7369 13 7 2.0300 -0.7141 1.1840 14 6 1.7741 -0.3852 2.4658 15 8 1.0790 0.5798 2.7187 16 7 2.2889 -1.1259 3.4672 17 6 2.0112 -0.7682 4.8604 18 6 2.6976 -1.7479 5.7769 19 1 3.2785 -2.5588 5.3630 20 6 2.5789 -1.6127 7.1439 21 7 1.8711 -0.6254 7.6480 22 14 3.4234 -2.8315 8.2800 23 1 4.8887 -2.7967 8.0419 24 1 3.1429 -2.4681 9.6923 25 1 2.9101 -4.1984 8.0088 26 1 -0.3633 0.3859 0.9525 27 1 -0.3633 0.6319 -0.8104 28 1 -0.3633 -1.0179 -0.1421 29 1 0.2340 1.1793 -2.3512 30 1 1.8481 0.9926 -3.1108 31 1 0.4038 0.9510 -5.0395 32 1 -0.8742 0.0439 -4.1690 33 1 1.6988 -0.9687 -5.3820 34 1 0.1516 -1.8313 -5.1339 35 1 2.5001 -1.8216 -3.4140 36 1 0.9713 -2.7128 -3.1827 37 1 3.1213 -2.6646 -1.2798 38 1 1.4382 -2.7695 -0.6626 39 1 3.9059 -1.5746 0.7144 40 1 2.7012 -2.7105 1.3927 41 1 2.8438 -1.8955 3.2653 42 1 0.9359 -0.7989 5.0360 43 1 2.3831 0.2371 5.0585 44 1 1.7879 -0.5300 8.6097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334899068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:39 Heat of formation + Delta-G solvation = -41.093118 kcal Electronic energy + Delta-G solvation = -22771.113444 eV Core-core repulsion = 19529.382965 eV Total energy + Delta-G solvation = -3241.730479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.56803 -40.04031 -37.97774 -36.15499 -34.50061 -33.33841 -32.28734 -30.40601 -29.55379 -28.77576 -26.40892 -25.01528 -23.71175 -22.67113 -21.82101 -20.82867 -20.47810 -19.37972 -18.08654 -17.53968 -17.05833 -16.84713 -16.59480 -16.34959 -15.72368 -15.10096 -14.81068 -14.75941 -14.62399 -14.05144 -14.03229 -13.68698 -13.67333 -13.30260 -13.27838 -12.94521 -12.90359 -12.71100 -12.66601 -12.22778 -12.18729 -12.00778 -11.84467 -11.77111 -11.52869 -11.49998 -11.35019 -11.07076 -10.79046 -10.03911 -9.40296 -9.32538 -8.28209 -6.45394 1.42792 1.48098 1.55804 1.70051 2.22509 2.38797 3.00024 3.06349 3.21899 3.45086 3.60550 3.79617 3.99704 4.07217 4.16391 4.25960 4.36332 4.42051 4.50119 4.55383 4.64688 4.70443 4.75461 4.80475 4.95080 5.00377 5.02339 5.04895 5.11769 5.16379 5.17342 5.25863 5.27561 5.35396 5.43076 5.45930 5.55828 5.73878 5.84843 5.99082 6.11615 6.24097 6.65967 7.19461 7.24941 7.71622 8.84159 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.043384 B = 0.003234 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.249529 B = 8656.687726 C = 9122.683884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.159 3.841 3 H 0.050 0.950 4 C 0.079 3.921 5 H 0.072 0.928 6 N -0.515 5.515 7 C 0.025 3.975 8 C -0.120 4.120 9 C -0.128 4.128 10 C 0.036 3.964 11 C -0.109 4.109 12 C 0.092 3.908 13 N -0.635 5.635 14 C 0.707 3.293 15 O -0.644 6.644 16 N -0.722 5.722 17 C 0.288 3.712 18 C -0.556 4.556 19 H 0.083 0.917 20 C 0.004 3.996 21 N -0.931 5.931 22 Si 0.988 3.012 23 H -0.261 1.261 24 H -0.285 1.285 25 H -0.261 1.261 26 H 0.021 0.979 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.402 0.598 42 H -0.017 1.017 43 H -0.016 1.016 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.870 -5.236 -27.175 27.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.054 3.946 3 H 0.068 0.932 4 C -0.030 4.030 5 H 0.090 0.910 6 N -0.239 5.239 7 C -0.102 4.102 8 C -0.158 4.158 9 C -0.166 4.166 10 C -0.091 4.091 11 C -0.147 4.147 12 C -0.031 4.031 13 N -0.374 5.374 14 C 0.409 3.591 15 O -0.526 6.526 16 N -0.376 5.376 17 C 0.165 3.835 18 C -0.594 4.594 19 H 0.101 0.899 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.810 3.190 23 H -0.185 1.185 24 H -0.210 1.210 25 H -0.186 1.186 26 H 0.040 0.960 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.237 0.763 42 H 0.001 0.999 43 H 0.002 0.998 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.825 -4.612 -26.471 26.932 hybrid contribution 0.954 0.041 0.796 1.243 sum 2.779 -4.570 -25.676 26.227 Atomic orbital electron populations 1.21829 0.94667 1.02264 1.00240 1.21327 0.95080 0.94604 0.83561 0.93182 1.22723 0.93084 0.96630 0.90587 0.91049 1.64752 1.41821 1.07360 1.10000 1.23407 1.00013 0.91313 0.95512 1.22454 1.00213 0.97571 0.95582 1.22394 1.00726 0.96885 0.96560 1.22880 0.99425 0.96891 0.89895 1.22822 1.02877 0.95467 0.93508 1.22542 0.95336 0.88405 0.96772 1.47616 1.54372 1.32766 1.02602 1.15820 0.80297 0.82492 0.80479 1.90815 1.45850 1.32297 1.83683 1.45327 1.54514 1.32061 1.05707 1.18389 0.94116 0.94738 0.76259 1.21548 1.32968 1.13192 0.91668 0.89896 1.26095 0.95684 0.97806 1.00001 1.70144 1.40802 1.32576 1.13459 0.85169 0.78966 0.78364 0.76463 1.18548 1.21005 1.18582 0.96002 0.90241 0.92373 0.90614 0.93235 0.89931 0.91224 0.90534 0.90454 0.92701 0.90084 0.86776 0.90056 0.89990 0.90282 0.76268 0.99906 0.99796 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 8.31 71.98 0.60 -3.48 16 2 C 0.16 4.57 3.20 45.34 0.14 4.72 16 3 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 4 C 0.08 1.51 2.25 46.10 0.10 1.61 16 5 H 0.07 1.21 7.93 -2.39 -0.02 1.19 16 6 N -0.51 -8.75 3.89 -850.98 -3.31 -12.06 16 7 C 0.02 0.39 5.86 86.65 0.51 0.89 16 8 C -0.12 -1.41 7.06 31.80 0.22 -1.19 16 9 C -0.13 -1.27 6.93 31.47 0.22 -1.05 16 10 C 0.04 0.44 5.80 86.45 0.50 0.94 16 11 C -0.11 -1.80 5.66 31.99 0.18 -1.62 16 12 C 0.09 2.09 6.58 86.86 0.57 2.66 16 13 N -0.63 -21.33 3.08 -805.89 -2.48 -23.82 16 14 C 0.71 32.56 8.26 179.05 1.48 34.04 16 15 O -0.64 -35.85 15.15 -3.99 -0.06 -35.91 16 16 N -0.72 -33.69 5.51 -482.29 -2.66 -36.35 16 17 C 0.29 16.75 5.43 85.63 0.46 17.21 16 18 C -0.56 -31.26 9.28 25.60 0.24 -31.02 16 19 H 0.08 4.20 7.60 -2.91 -0.02 4.17 16 20 C 0.00 0.21 5.46 84.65 0.46 0.67 16 21 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 22 Si 0.99 42.96 29.54 68.60 2.03 44.98 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 26 H 0.02 0.85 6.52 -2.39 -0.02 0.84 16 27 H 0.08 2.09 5.51 -2.39 -0.01 2.08 16 28 H 0.06 1.76 8.03 -2.38 -0.02 1.75 16 29 H 0.08 1.35 6.11 -2.39 -0.01 1.34 16 30 H 0.05 0.72 7.88 -2.39 -0.02 0.71 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.57 7.63 -2.39 -0.02 0.55 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.11 1.16 8.08 -2.39 -0.02 1.15 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.08 1.76 7.29 -2.39 -0.02 1.75 16 41 H 0.40 15.73 6.80 -92.71 -0.63 15.10 16 42 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 43 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 44 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -75.77 340.95 -0.16 -75.93 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.35 Total: 20.06 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: 5.69 Total: 24.40 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -8.17 Total: -129.47 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.06 Total: -35.91 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -75.77 -0.16 -75.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334899068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.841 kcal (2) G-P(sol) polarization free energy of solvation -75.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds