Wall clock time and date at job start Tue Mar 31 2020 05:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.49030 * 2 1 4 4 C 1.52779 * 109.58624 * 240.08167 * 2 1 3 5 5 N 1.47082 * 108.76404 * 186.35519 * 4 2 1 6 6 C 1.34773 * 120.88039 * 231.11907 * 5 4 2 7 7 O 1.21592 * 119.99915 * 184.69354 * 6 5 4 8 8 N 1.34779 * 120.00230 * 4.69080 * 6 5 4 9 9 C 1.46498 * 120.00191 * 175.05682 * 8 6 5 10 10 C 1.52995 * 109.47265 * 184.75894 * 9 8 6 11 11 C 1.50701 * 115.54645 * 304.70795 * 10 9 8 12 12 H 1.08002 * 120.00007 * 143.03223 * 11 10 9 13 13 C 1.37877 * 119.99991 * 323.02828 * 11 10 9 14 14 N 1.31517 * 119.99931 * 168.91350 * 13 11 10 15 15 Si 1.86795 * 120.00224 * 348.92282 * 13 11 10 16 16 H 1.48504 * 109.47534 * 95.41031 * 15 13 11 17 17 H 1.48504 * 109.47172 * 215.41178 * 15 13 11 18 18 H 1.48500 * 109.47142 * 335.41087 * 15 13 11 19 19 C 1.53000 * 117.50053 * 159.04185 * 10 9 8 20 20 C 1.52999 * 117.50173 * 90.38062 * 10 9 8 21 21 C 1.47078 * 118.23747 * 50.85088 * 5 4 2 22 22 H 1.09001 * 109.63160 * 189.18157 * 21 5 4 23 23 C 1.53003 * 109.63086 * 68.79510 * 21 5 4 24 24 C 1.53244 * 108.52240 * 309.08847 * 21 5 4 25 25 N 1.46896 * 109.49079 * 120.05375 * 2 1 3 26 26 H 1.09003 * 109.47063 * 299.94529 * 1 2 3 27 27 H 1.09000 * 109.46845 * 59.95001 * 1 2 3 28 28 H 1.09003 * 109.46894 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.56300 * 66.53964 * 4 2 1 30 30 H 1.09000 * 109.45804 * 306.10874 * 4 2 1 31 31 H 0.96999 * 119.99641 * 354.78455 * 8 6 5 32 32 H 1.09008 * 109.47056 * 304.75736 * 9 8 6 33 33 H 1.09003 * 109.47213 * 64.75209 * 9 8 6 34 34 H 0.96996 * 120.00481 * 180.02562 * 14 13 11 35 35 H 1.09001 * 117.49610 * 359.97438 * 19 10 9 36 36 H 1.08997 * 117.50233 * 145.01649 * 19 10 9 37 37 H 1.09002 * 117.49725 * 214.98289 * 20 10 9 38 38 H 1.09001 * 117.49756 * 359.97181 * 20 10 9 39 39 H 1.09002 * 109.46834 * 60.00250 * 23 21 5 40 40 H 1.09000 * 109.47266 * 180.02562 * 23 21 5 41 41 H 1.08996 * 109.47134 * 300.00393 * 23 21 5 42 42 H 1.08998 * 109.49557 * 173.79021 * 24 21 5 43 43 H 1.08998 * 109.49204 * 293.87452 * 24 21 5 44 44 H 1.00895 * 111.00403 * 58.94632 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0422 -0.7179 -1.2476 5 7 3.5049 -0.8424 -1.1549 6 6 4.2984 -0.4481 -2.1704 7 8 5.4983 -0.6364 -2.1127 8 7 3.7620 0.1548 -3.2499 9 6 4.6332 0.6804 -4.3038 10 6 3.7871 1.4135 -5.3466 11 6 2.6691 0.6091 -5.9584 12 1 1.7274 1.0837 -6.1916 13 6 2.8486 -0.7325 -6.2206 14 7 1.8185 -1.4823 -6.5468 15 14 4.5547 -1.4853 -6.1124 16 1 4.7430 -2.0942 -4.7710 17 1 4.7012 -2.5317 -7.1559 18 1 5.5764 -0.4287 -6.3241 19 6 4.4952 2.4331 -6.2409 20 6 3.5480 2.9100 -5.1371 21 6 4.0788 -1.4031 0.0778 22 1 5.1620 -1.2822 0.0654 23 6 3.7287 -2.8891 0.1782 24 6 3.4867 -0.6527 1.2756 25 7 2.0202 -0.6935 1.1986 26 1 -0.3633 0.5130 0.8905 27 1 -0.3633 0.5146 -0.8896 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7794 -0.1412 -2.1343 30 1 1.5933 -1.7095 -1.3059 31 1 2.7989 0.2371 -3.3308 32 1 5.3534 1.3730 -3.8681 33 1 5.1643 -0.1435 -4.7807 34 1 1.9446 -2.4263 -6.7309 35 1 5.5638 2.5819 -6.0860 36 1 4.1523 2.5225 -7.2717 37 1 2.5822 3.3130 -5.4420 38 1 3.9932 3.3723 -4.2560 39 1 4.1363 -3.4175 -0.6836 40 1 4.1548 -3.3018 1.0927 41 1 2.6452 -3.0066 0.1974 42 1 3.8157 -1.1265 2.2004 43 1 3.8231 0.3839 1.2578 44 1 1.6828 -1.6439 1.2299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334942957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:27 Heat of formation + Delta-G solvation = 16.156981 kcal Electronic energy + Delta-G solvation = -23853.107845 eV Core-core repulsion = 20613.859917 eV Total energy + Delta-G solvation = -3239.247928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40363 -38.29304 -36.94946 -34.06204 -33.72722 -32.48780 -32.27725 -29.34418 -26.95423 -26.26540 -25.40898 -24.88908 -21.93474 -21.51935 -20.83782 -19.47077 -18.89171 -17.97810 -16.50050 -15.92969 -15.83692 -15.33324 -15.22901 -14.78552 -14.44253 -14.26413 -13.77843 -13.51789 -13.43896 -12.98005 -12.86035 -12.43951 -12.26760 -12.20451 -12.04134 -11.96660 -11.64664 -11.20582 -11.10757 -11.01061 -10.83367 -10.67078 -10.50603 -9.98821 -9.77966 -9.50677 -9.34099 -9.13819 -8.98038 -8.48232 -8.25448 -7.87501 -6.28527 -4.24411 2.91918 3.30053 3.37285 3.41066 3.65084 4.07524 4.30501 4.31123 4.71863 4.80740 4.93074 4.93527 5.03090 5.10916 5.28641 5.32533 5.41151 5.51589 5.56145 5.63182 5.70885 5.74686 5.81522 5.88751 5.92084 6.00253 6.11016 6.13589 6.16406 6.21591 6.43470 6.47642 6.62880 6.71329 6.84039 6.85811 7.07053 7.20237 7.23326 7.35085 7.60479 8.34741 8.50471 8.76476 9.08909 9.36536 10.82076 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018042 B = 0.006126 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.543249 B = 4569.907122 C = 4739.752056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.071 3.929 3 H 0.085 0.915 4 C 0.077 3.923 5 N -0.630 5.630 6 C 0.705 3.295 7 O -0.604 6.604 8 N -0.718 5.718 9 C 0.159 3.841 10 C -0.008 4.008 11 C -0.490 4.490 12 H 0.080 0.920 13 C 0.085 3.915 14 N -0.885 5.885 15 Si 0.886 3.114 16 H -0.276 1.276 17 H -0.300 1.300 18 H -0.262 1.262 19 C -0.199 4.199 20 C -0.186 4.186 21 C 0.116 3.884 22 H 0.102 0.898 23 C -0.161 4.161 24 C 0.051 3.949 25 N -0.679 5.679 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.406 0.594 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.266 0.734 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 0.879 14.259 14.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.040 4.040 3 H 0.104 0.896 4 C -0.048 4.048 5 N -0.368 5.368 6 C 0.407 3.593 7 O -0.484 6.484 8 N -0.374 5.374 9 C 0.035 3.965 10 C -0.010 4.010 11 C -0.527 4.527 12 H 0.098 0.902 13 C -0.119 4.119 14 N -0.521 5.521 15 Si 0.717 3.283 16 H -0.202 1.202 17 H -0.229 1.229 18 H -0.188 1.188 19 C -0.237 4.237 20 C -0.223 4.223 21 C 0.010 3.990 22 H 0.120 0.880 23 C -0.219 4.219 24 C -0.079 4.079 25 N -0.309 5.309 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.245 0.755 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.220 1.134 14.630 14.676 hybrid contribution 0.690 -1.158 -0.944 1.646 sum 0.469 -0.024 13.686 13.694 Atomic orbital electron populations 1.21757 0.93370 1.02326 1.02664 1.21852 0.95750 0.98741 0.87661 0.89635 1.22333 0.80790 1.01359 1.00360 1.47269 1.05651 1.67434 1.16436 1.15878 0.84878 0.78426 0.80121 1.90840 1.13452 1.62909 1.81181 1.45244 1.11245 1.61138 1.19757 1.21153 0.91435 0.96882 0.87003 1.19546 0.97437 0.88335 0.95654 1.20305 0.98007 0.93142 1.41236 0.90206 1.24927 0.96379 0.96802 0.93788 1.69908 1.29768 1.06590 1.45793 0.86983 0.85354 0.78555 0.77400 1.20205 1.22861 1.18826 1.23101 0.95931 1.08353 0.96327 1.22818 1.00362 0.99486 0.99661 1.21718 1.00474 0.92731 0.84082 0.87981 1.22102 1.01509 0.95907 1.02428 1.22400 0.87668 1.01180 0.96696 1.60735 1.09164 1.21615 1.39340 0.91570 0.91410 0.92567 0.89100 0.91552 0.75490 0.92916 0.92596 0.92367 0.91177 0.89299 0.89782 0.90908 0.92014 0.91492 0.92773 0.89612 0.90488 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.49 37.16 0.35 -1.01 16 2 C 0.07 0.80 3.15 -67.82 -0.21 0.59 16 3 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.08 1.06 5.43 -3.84 -0.02 1.04 16 5 N -0.63 -10.26 2.71 -170.89 -0.46 -10.72 16 6 C 0.71 14.67 8.31 -86.92 -0.72 13.95 16 7 O -0.60 -14.45 15.83 5.28 0.08 -14.37 16 8 N -0.72 -15.15 5.03 -65.22 -0.33 -15.48 16 9 C 0.16 3.59 4.34 -4.05 -0.02 3.57 16 10 C -0.01 -0.19 1.41 -155.66 -0.22 -0.41 16 11 C -0.49 -12.80 8.84 -34.44 -0.30 -13.10 16 12 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 13 C 0.09 2.33 5.41 -17.82 -0.10 2.24 16 14 N -0.88 -25.40 13.96 55.43 0.77 -24.62 16 15 Si 0.89 22.54 24.01 -169.99 -4.08 18.46 16 16 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 17 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 18 H -0.26 -6.50 6.38 56.52 0.36 -6.14 16 19 C -0.20 -4.07 9.96 -26.69 -0.27 -4.34 16 20 C -0.19 -3.63 9.93 -26.69 -0.27 -3.89 16 21 C 0.12 1.56 3.21 -67.49 -0.22 1.35 16 22 H 0.10 1.57 7.09 -51.93 -0.37 1.20 16 23 C -0.16 -1.89 9.11 37.16 0.34 -1.55 16 24 C 0.05 0.55 6.15 -3.70 -0.02 0.53 16 25 N -0.68 -7.06 6.47 -106.70 -0.69 -7.75 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 1.36 5.64 -51.93 -0.29 1.07 16 30 H 0.07 0.89 7.65 -51.93 -0.40 0.49 16 31 H 0.41 8.29 5.47 -40.82 -0.22 8.06 16 32 H 0.05 1.14 8.10 -51.92 -0.42 0.72 16 33 H 0.06 1.40 2.59 -51.93 -0.13 1.26 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.58 6.12 -51.93 -0.32 0.26 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.34 3.22 7.19 -39.29 -0.28 2.94 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -30.65 337.24 -8.41 -39.05 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -7.11 Total: 11.40 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.67 Total: -1.05 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.71 Total: -58.57 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.08 Total: -14.37 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.08 Total: 18.46 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.65 -8.41 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334942957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.211 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds