Wall clock time and date at job start Tue Mar 31 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.49461 * 2 1 4 4 C 1.53235 * 109.49511 * 239.93747 * 2 1 3 5 5 N 1.47079 * 108.52360 * 186.18887 * 4 2 1 6 6 C 1.34773 * 120.88009 * 231.19535 * 5 4 2 7 7 O 1.21598 * 119.99988 * 185.42168 * 6 5 4 8 8 N 1.34775 * 120.00723 * 5.40904 * 6 5 4 9 9 C 1.46491 * 120.00777 * 184.94728 * 8 6 5 10 10 C 1.53001 * 109.47501 * 182.28807 * 9 8 6 11 11 C 1.50702 * 115.54283 * 54.11259 * 10 9 8 12 12 H 1.07999 * 119.99636 * 209.21026 * 11 10 9 13 13 C 1.37872 * 120.00243 * 29.21699 * 11 10 9 14 14 N 1.31518 * 120.00064 * 198.92813 * 13 11 10 15 15 Si 1.86801 * 120.00243 * 18.92278 * 13 11 10 16 16 H 1.48498 * 109.47080 * 264.13503 * 15 13 11 17 17 H 1.48504 * 109.46920 * 24.13738 * 15 13 11 18 18 H 1.48504 * 109.46978 * 144.13725 * 15 13 11 19 19 C 1.52998 * 117.49920 * 199.78004 * 10 9 8 20 20 C 1.52989 * 117.50095 * 268.44227 * 10 9 8 21 21 C 1.47077 * 118.23811 * 51.45766 * 5 4 2 22 22 H 1.09002 * 109.62835 * 68.25290 * 21 5 4 23 23 C 1.53002 * 109.63158 * 188.83702 * 21 5 4 24 24 C 1.53697 * 108.27746 * 308.48994 * 21 5 4 25 25 N 1.46899 * 109.26012 * 54.07957 * 24 21 5 26 26 H 1.08998 * 109.47856 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47552 * 300.06215 * 1 2 3 28 28 H 1.09000 * 109.46689 * 60.05781 * 1 2 3 29 29 H 1.08998 * 109.62507 * 66.48087 * 4 2 1 30 30 H 1.08997 * 109.63335 * 305.90072 * 4 2 1 31 31 H 0.97004 * 119.99156 * 4.95401 * 8 6 5 32 32 H 1.09004 * 109.46846 * 62.29408 * 9 8 6 33 33 H 1.08996 * 109.47307 * 302.29587 * 9 8 6 34 34 H 0.96998 * 120.00625 * 179.97438 * 14 13 11 35 35 H 1.09005 * 117.49259 * 215.00453 * 19 10 9 36 36 H 1.08998 * 117.50382 * 0.02562 * 19 10 9 37 37 H 1.09001 * 117.50170 * 359.97438 * 20 10 9 38 38 H 1.09009 * 117.49871 * 144.97446 * 20 10 9 39 39 H 1.08993 * 109.46870 * 49.68511 * 23 21 5 40 40 H 1.08998 * 109.47071 * 169.68726 * 23 21 5 41 41 H 1.09001 * 109.46601 * 289.68657 * 23 21 5 42 42 H 1.09003 * 109.64773 * 294.07292 * 24 21 5 43 43 H 1.08999 * 109.42213 * 173.94831 * 24 21 5 44 44 H 1.00903 * 111.00278 * 172.61403 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7236 -1.2502 5 7 3.5043 -0.8426 -1.1556 6 6 4.2974 -0.4481 -2.1713 7 8 5.4964 -0.6437 -2.1178 8 7 3.7619 0.1631 -3.2465 9 6 4.6060 0.4944 -4.3970 10 6 3.7706 1.2276 -5.4484 11 6 3.0328 2.4466 -4.9576 12 1 2.1053 2.7413 -5.4259 13 6 3.5420 3.1858 -3.9111 14 7 2.7586 4.0013 -3.2396 15 14 5.3446 3.0289 -3.4468 16 1 5.4867 2.0525 -2.3370 17 1 6.1195 2.5579 -4.6228 18 1 5.8605 4.3516 -3.0114 19 6 4.3044 1.2543 -6.8820 20 6 3.0966 0.3820 -6.5306 21 6 4.0783 -1.4090 0.0743 22 1 3.8251 -2.4669 0.1432 23 6 5.5989 -1.2405 0.0569 24 6 3.4870 -0.6530 1.2748 25 7 2.0206 -0.6937 1.1985 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5148 0.8894 28 1 -0.3633 0.5129 -0.8905 29 1 1.7773 -0.1502 -2.1388 30 1 1.5961 -1.7169 -1.3063 31 1 2.8173 0.3837 -3.2585 32 1 5.0091 -0.4222 -4.8278 33 1 5.4263 1.1350 -4.0733 34 1 3.1167 4.5211 -2.5031 35 1 4.1218 2.1537 -7.4702 36 1 5.2505 0.7492 -7.0763 37 1 3.2487 -0.6967 -6.4940 38 1 2.1193 0.7071 -6.8876 39 1 5.8472 -0.2074 -0.1861 40 1 6.0034 -1.4903 1.0377 41 1 6.0293 -1.9038 -0.6934 42 1 3.8236 0.3836 1.2571 43 1 3.8164 -1.1269 2.1995 44 1 1.6042 -0.3105 2.0339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334942958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:29 Heat of formation + Delta-G solvation = 31.233341 kcal Electronic energy + Delta-G solvation = -24098.677702 eV Core-core repulsion = 20860.083534 eV Total energy + Delta-G solvation = -3238.594168 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.28495 -37.98085 -36.91720 -34.21890 -33.70972 -32.40172 -32.20332 -29.44319 -26.94663 -25.88258 -25.01988 -24.77626 -21.87746 -21.45603 -20.66755 -19.45107 -18.92636 -17.44259 -16.50933 -16.14018 -15.81195 -15.40087 -15.17486 -14.91685 -14.28069 -14.16945 -13.80420 -13.39677 -13.09738 -12.90405 -12.73457 -12.42948 -12.09771 -12.03231 -11.89951 -11.63945 -11.49500 -11.18822 -11.04136 -10.90091 -10.81086 -10.63201 -10.48905 -9.97330 -9.54448 -9.41955 -8.96633 -8.88614 -8.69579 -8.36252 -8.27014 -7.90088 -6.30033 -4.19727 3.05216 3.33859 3.41431 3.46580 3.74914 4.09654 4.34276 4.38752 4.76620 4.85482 4.98119 5.12828 5.29104 5.31148 5.33743 5.38114 5.60306 5.65012 5.67573 5.77511 5.82813 5.89489 5.92077 5.95146 6.04062 6.15533 6.22766 6.24764 6.42499 6.46801 6.50724 6.62328 6.66806 6.83400 6.88196 7.02827 7.09980 7.24244 7.31195 7.48343 7.63084 8.36292 8.59245 8.78521 9.20251 9.38193 10.80042 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.006895 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.632385 B = 4059.962372 C = 4345.418797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 H 0.048 0.952 4 C 0.123 3.877 5 N -0.633 5.633 6 C 0.704 3.296 7 O -0.596 6.596 8 N -0.719 5.719 9 C 0.160 3.840 10 C -0.004 4.004 11 C -0.495 4.495 12 H 0.079 0.921 13 C 0.090 3.910 14 N -0.878 5.878 15 Si 0.880 3.120 16 H -0.267 1.267 17 H -0.267 1.267 18 H -0.304 1.304 19 C -0.203 4.203 20 C -0.190 4.190 21 C 0.168 3.832 22 H 0.072 0.928 23 C -0.135 4.135 24 C 0.045 3.955 25 N -0.684 5.684 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.405 0.595 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.265 0.735 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.036 0.964 43 H 0.083 0.917 44 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 -9.500 7.763 12.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.044 4.044 3 H 0.066 0.934 4 C -0.001 4.001 5 N -0.372 5.372 6 C 0.406 3.594 7 O -0.476 6.476 8 N -0.376 5.376 9 C 0.037 3.963 10 C -0.005 4.005 11 C -0.531 4.531 12 H 0.097 0.903 13 C -0.115 4.115 14 N -0.513 5.513 15 Si 0.711 3.289 16 H -0.193 1.193 17 H -0.193 1.193 18 H -0.232 1.232 19 C -0.241 4.241 20 C -0.227 4.227 21 C 0.064 3.936 22 H 0.090 0.910 23 C -0.193 4.193 24 C -0.085 4.085 25 N -0.316 5.316 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.243 0.757 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.101 0.899 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.693 -10.114 7.626 12.779 hybrid contribution 0.593 1.207 0.488 1.430 sum -1.101 -8.907 8.114 12.099 Atomic orbital electron populations 1.21768 0.93432 1.02522 1.02445 1.21878 0.95639 0.96082 0.90776 0.93377 1.21740 0.80046 1.00717 0.97632 1.47330 1.05837 1.67300 1.16698 1.15919 0.84907 0.78583 0.79944 1.90881 1.13277 1.63249 1.80240 1.45312 1.13908 1.61966 1.16409 1.21023 0.92597 0.97568 0.85146 1.19528 0.97831 0.96876 0.86266 1.20256 1.08357 1.07939 1.16557 0.90322 1.24905 0.97302 0.94642 0.94660 1.69982 1.35020 1.27109 1.19167 0.87087 0.86242 0.75782 0.79745 1.19296 1.19268 1.23247 1.23097 0.96087 1.01578 1.03351 1.22857 0.96737 0.95679 1.07441 1.21173 0.94167 0.96416 0.81863 0.90992 1.22117 0.92616 1.04726 0.99824 1.22516 0.87904 0.99408 0.98679 1.60375 1.06444 1.59815 1.04980 0.91727 0.92553 0.91233 0.89420 0.91033 0.75668 0.93172 0.92325 0.92493 0.89449 0.91218 0.90913 0.89864 0.91416 0.94268 0.90266 0.94598 0.89916 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.43 37.16 0.35 -1.21 16 2 C 0.07 0.89 3.18 -67.59 -0.21 0.68 16 3 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.12 1.81 5.89 -3.61 -0.02 1.79 16 5 N -0.63 -10.94 3.00 -170.34 -0.51 -11.45 16 6 C 0.70 14.73 7.53 -86.92 -0.65 14.08 16 7 O -0.60 -13.80 12.00 5.28 0.06 -13.74 16 8 N -0.72 -15.26 4.38 -65.23 -0.29 -15.54 16 9 C 0.16 3.60 4.41 -4.05 -0.02 3.58 16 10 C 0.00 -0.08 1.58 -155.67 -0.25 -0.33 16 11 C -0.49 -12.98 8.93 -34.44 -0.31 -13.29 16 12 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 13 C 0.09 2.45 5.15 -17.82 -0.09 2.36 16 14 N -0.88 -24.99 13.96 55.43 0.77 -24.22 16 15 Si 0.88 22.50 23.61 -169.99 -4.01 18.48 16 16 H -0.27 -7.06 6.44 56.52 0.36 -6.70 16 17 H -0.27 -6.70 6.60 56.52 0.37 -6.33 16 18 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 19 C -0.20 -4.16 9.96 -26.70 -0.27 -4.42 16 20 C -0.19 -3.71 9.92 -26.70 -0.26 -3.98 16 21 C 0.17 2.52 3.67 -67.25 -0.25 2.27 16 22 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 23 C -0.14 -2.17 7.65 37.16 0.28 -1.88 16 24 C 0.05 0.58 6.01 -3.46 -0.02 0.56 16 25 N -0.68 -8.16 6.49 -106.20 -0.69 -8.84 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.37 5.63 -51.93 -0.29 1.07 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.40 8.36 5.57 -40.82 -0.23 8.13 16 32 H 0.05 1.06 8.09 -51.93 -0.42 0.64 16 33 H 0.06 1.46 2.76 -51.93 -0.14 1.31 16 34 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.61 8.14 -51.92 -0.42 1.18 16 39 H 0.07 1.31 6.80 -51.93 -0.35 0.95 16 40 H 0.04 0.50 8.13 -51.93 -0.42 0.08 16 41 H 0.08 1.40 6.76 -51.93 -0.35 1.05 16 42 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.34 3.41 8.77 -39.29 -0.34 3.06 16 LS Contribution 333.45 15.07 5.03 5.03 Total: -1.00 -29.94 333.45 -8.61 -38.55 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -7.25 Total: 11.53 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.72 Total: 0.21 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.71 Total: -60.06 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.06 Total: -13.74 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.01 Total: 18.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.94 -8.61 -38.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334942958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.780 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds