Wall clock time and date at job start Tue Mar 31 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.48890 * 2 1 4 4 N 1.46895 * 109.49368 * 120.04952 * 2 1 3 5 5 C 1.46900 * 111.27076 * 183.06625 * 4 2 1 6 6 C 1.53246 * 109.33925 * 296.89871 * 5 4 2 7 7 N 1.47075 * 108.51930 * 53.82884 * 6 5 4 8 8 C 1.34779 * 120.88310 * 128.82038 * 7 6 5 9 9 O 1.21576 * 120.00123 * 185.41487 * 8 7 6 10 10 N 1.34782 * 119.99559 * 5.41480 * 8 7 6 11 11 C 1.46494 * 119.99794 * 185.18770 * 10 8 7 12 12 C 1.52999 * 109.47393 * 184.98081 * 11 10 8 13 13 C 1.50693 * 115.56224 * 90.59830 * 12 11 10 14 14 H 1.08001 * 120.00138 * 269.10315 * 13 12 11 15 15 C 1.37882 * 120.00273 * 89.10538 * 13 12 11 16 16 N 1.31513 * 120.00414 * 184.89367 * 15 13 12 17 17 Si 1.86806 * 119.99318 * 4.88903 * 15 13 12 18 18 H 1.48501 * 109.46712 * 84.96784 * 17 15 13 19 19 H 1.48504 * 109.46629 * 204.96079 * 17 15 13 20 20 H 1.48493 * 109.47509 * 324.96278 * 17 15 13 21 21 C 1.53001 * 117.49620 * 304.91332 * 12 11 10 22 22 C 1.52997 * 60.00049 * 252.51112 * 21 12 11 23 23 C 1.47083 * 118.23605 * 309.08587 * 7 6 5 24 24 H 1.08997 * 109.62885 * 291.20038 * 23 7 6 25 25 C 1.53005 * 109.62529 * 170.62336 * 23 7 6 26 26 H 1.09003 * 109.47259 * 299.94726 * 1 2 3 27 27 H 1.08993 * 109.47076 * 59.94535 * 1 2 3 28 28 H 1.09001 * 109.46598 * 179.97438 * 1 2 3 29 29 H 1.00899 * 111.00283 * 307.21827 * 4 2 1 30 30 H 1.08995 * 109.49439 * 176.93941 * 5 4 2 31 31 H 1.08998 * 109.49492 * 56.85760 * 5 4 2 32 32 H 1.09006 * 109.62703 * 294.11997 * 6 5 4 33 33 H 1.08998 * 109.62888 * 173.53638 * 6 5 4 34 34 H 0.96997 * 120.00006 * 5.18123 * 10 8 7 35 35 H 1.08996 * 109.47488 * 64.97735 * 11 10 8 36 36 H 1.09010 * 109.46896 * 304.97911 * 11 10 8 37 37 H 0.96994 * 119.99970 * 179.97438 * 16 15 13 38 38 H 1.08999 * 117.49894 * 145.01555 * 21 12 11 39 39 H 1.09002 * 117.49531 * 359.97438 * 21 12 11 40 40 H 1.08990 * 117.50260 * 107.48930 * 22 21 12 41 41 H 1.09006 * 117.49240 * 252.51524 * 22 21 12 42 42 H 1.09005 * 109.47403 * 65.28987 * 25 23 7 43 43 H 1.09006 * 109.46874 * 185.28756 * 25 23 7 44 44 H 1.08997 * 109.47255 * 305.29197 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 7 2.0202 -0.6934 1.1986 5 6 3.4867 -0.6532 1.2753 6 6 4.0783 -1.4040 0.0775 7 7 3.5043 -0.8434 -1.1551 8 6 4.2978 -0.4495 -2.1709 9 8 3.8148 0.1017 -3.1410 10 7 5.6266 -0.6667 -2.1112 11 6 6.5029 -0.1390 -3.1598 12 6 7.9333 -0.6275 -2.9229 13 6 8.2965 -1.9266 -3.5947 14 1 8.1542 -2.8620 -3.0740 15 6 8.8105 -1.9211 -4.8741 16 7 9.0373 -3.0571 -5.4966 17 14 9.1847 -0.2997 -5.7231 18 1 10.5392 0.1643 -5.3289 19 1 9.1353 -0.4890 -7.1952 20 1 8.1773 0.7141 -5.3203 21 6 8.5616 -0.3381 -1.5582 22 6 9.0295 0.4322 -2.7946 23 6 2.0417 -0.7184 -1.2475 24 1 1.5925 -1.7097 -1.3056 25 6 1.6727 0.0912 -2.4922 26 1 -0.3634 0.5130 0.8905 27 1 -0.3633 0.5146 -0.8894 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6038 -0.3100 2.0339 30 1 3.8157 -1.1269 2.2001 31 1 3.8236 0.3833 1.2573 32 1 3.8285 -2.4626 0.1493 33 1 5.1612 -1.2803 0.0664 34 1 6.0027 -1.1724 -1.3738 35 1 6.4824 0.9505 -3.1363 36 1 6.1563 -0.4880 -4.1327 37 1 9.3985 -3.0531 -6.3968 38 1 9.2377 -1.0874 -1.1463 39 1 7.9560 0.2007 -0.8294 40 1 8.7316 1.4772 -2.8791 41 1 10.0134 0.1895 -3.1961 42 1 1.9661 -0.4610 -3.3851 43 1 0.5963 0.2625 -2.5083 44 1 2.1928 1.0489 -2.4702 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334943919.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:42 Heat of formation + Delta-G solvation = 21.499588 kcal Electronic energy + Delta-G solvation = -23326.673212 eV Core-core repulsion = 20087.656956 eV Total energy + Delta-G solvation = -3239.016255 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46632 -38.14852 -37.02260 -34.46507 -33.64773 -32.76019 -32.08359 -28.71699 -27.60061 -26.57625 -25.19829 -23.95416 -22.32746 -21.86446 -20.72163 -19.38025 -19.05103 -17.59063 -16.45897 -16.04044 -15.83106 -15.51232 -15.30524 -14.88687 -14.45091 -14.41158 -13.87005 -13.58681 -13.05706 -12.83536 -12.69408 -12.62536 -12.40135 -12.19924 -11.87472 -11.78679 -11.71228 -11.40396 -11.15215 -11.05889 -10.93639 -10.91117 -10.41900 -10.17680 -9.65044 -9.21985 -9.00064 -8.88537 -8.65255 -8.52076 -8.45041 -8.10157 -6.13530 -4.17558 2.89025 3.29628 3.40579 3.45727 3.60533 3.88697 4.23704 4.41732 4.67742 4.74883 4.88578 4.93777 5.07231 5.12038 5.14811 5.18576 5.36585 5.47247 5.52198 5.64602 5.67175 5.72543 5.81041 5.85960 5.99605 6.02192 6.03805 6.28680 6.34332 6.35050 6.42315 6.54898 6.65195 6.70012 6.89350 6.98998 7.05529 7.12961 7.21513 7.33439 7.69625 8.42121 8.44185 8.87656 9.06190 9.49128 10.98081 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027622 B = 0.004446 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.446362 B = 6296.247321 C = 6676.530880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.072 3.928 3 H 0.042 0.958 4 N -0.685 5.685 5 C 0.045 3.955 6 C 0.114 3.886 7 N -0.634 5.634 8 C 0.703 3.297 9 O -0.589 6.589 10 N -0.728 5.728 11 C 0.173 3.827 12 C -0.011 4.011 13 C -0.490 4.490 14 H 0.078 0.922 15 C 0.079 3.921 16 N -0.895 5.895 17 Si 0.883 3.117 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.260 1.260 21 C -0.182 4.182 22 C -0.195 4.195 23 C 0.172 3.828 24 H 0.072 0.928 25 C -0.136 4.136 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.342 0.658 30 H 0.086 0.914 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.393 0.607 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.266 0.734 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.094 6.315 14.157 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 H 0.060 0.940 4 N -0.317 5.317 5 C -0.085 4.085 6 C -0.010 4.010 7 N -0.373 5.373 8 C 0.405 3.595 9 O -0.468 6.468 10 N -0.383 5.383 11 C 0.049 3.951 12 C -0.012 4.012 13 C -0.528 4.528 14 H 0.096 0.904 15 C -0.124 4.124 16 N -0.531 5.531 17 Si 0.712 3.288 18 H -0.204 1.204 19 H -0.222 1.222 20 H -0.184 1.184 21 C -0.219 4.219 22 C -0.233 4.233 23 C 0.068 3.932 24 H 0.090 0.910 25 C -0.193 4.193 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.160 0.840 30 H 0.105 0.895 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.229 0.771 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.351 6.026 12.936 19.543 hybrid contribution 0.774 1.424 0.223 1.637 sum -12.577 7.451 13.159 19.668 Atomic orbital electron populations 1.21842 0.93584 1.02849 1.02044 1.21883 0.95555 0.95677 0.90796 0.94045 1.60328 1.06407 1.59977 1.04966 1.22295 0.88163 0.99194 0.98866 1.21694 0.97795 0.98149 0.83325 1.47346 1.06119 1.67708 1.16114 1.15998 0.81492 0.79446 0.82586 1.90918 1.73097 1.49219 1.33615 1.45465 1.04872 1.58931 1.29038 1.21149 0.88554 0.95094 0.90311 1.19688 0.88932 0.96052 0.96544 1.20208 1.42875 0.90217 0.99456 0.90417 1.24987 0.94444 0.96259 0.96738 1.69889 1.44088 1.25858 1.13297 0.86807 0.79420 0.84710 0.77910 1.20407 1.22225 1.18418 1.22825 1.04721 1.03253 0.91113 1.23003 1.00715 0.95851 1.03702 1.21030 0.78451 0.99151 0.94550 0.91041 1.22226 0.98359 1.01778 0.96945 0.92649 0.91365 0.91524 0.84003 0.89544 0.94728 0.90742 0.89830 0.77095 0.94283 0.91017 0.92447 0.89313 0.91037 0.90685 0.89089 0.90230 0.94091 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.21 37.16 0.34 -0.85 16 2 C 0.07 0.75 2.62 -67.83 -0.18 0.57 16 3 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 4 N -0.68 -6.41 6.49 -106.71 -0.69 -7.11 16 5 C 0.05 0.43 6.70 -3.70 -0.02 0.40 16 6 C 0.11 1.33 6.49 -3.60 -0.02 1.31 16 7 N -0.63 -9.37 3.02 -170.88 -0.52 -9.89 16 8 C 0.70 13.08 8.21 -86.91 -0.71 12.36 16 9 O -0.59 -12.62 11.82 5.30 0.06 -12.56 16 10 N -0.73 -13.56 5.31 -65.23 -0.35 -13.90 16 11 C 0.17 3.72 5.49 -4.05 -0.02 3.70 16 12 C -0.01 -0.24 1.00 -155.66 -0.16 -0.40 16 13 C -0.49 -13.24 9.39 -34.44 -0.32 -13.56 16 14 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 15 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 16 N -0.89 -26.93 13.96 55.43 0.77 -26.16 16 17 Si 0.88 21.71 24.87 -169.99 -4.23 17.48 16 18 H -0.28 -6.60 6.92 56.52 0.39 -6.21 16 19 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.26 -6.17 6.71 56.52 0.38 -5.79 16 21 C -0.18 -3.41 9.35 -26.73 -0.25 -3.66 16 22 C -0.20 -4.00 7.31 -26.73 -0.20 -4.20 16 23 C 0.17 2.28 3.09 -67.72 -0.21 2.07 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 25 C -0.14 -1.94 7.48 37.16 0.28 -1.66 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.55 6.53 -51.93 -0.34 0.21 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.34 2.53 8.77 -39.29 -0.34 2.19 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.93 5.86 -51.93 -0.30 0.63 16 34 H 0.39 6.55 5.70 -40.82 -0.23 6.32 16 35 H 0.04 0.82 7.87 -51.93 -0.41 0.41 16 36 H 0.07 1.76 7.99 -51.92 -0.41 1.34 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.41 8.03 -51.93 -0.42 1.00 16 41 H 0.09 1.96 6.53 -51.93 -0.34 1.63 16 42 H 0.08 1.36 6.69 -51.93 -0.35 1.01 16 43 H 0.04 0.47 6.44 -51.93 -0.33 0.13 16 44 H 0.07 1.13 6.86 -51.93 -0.36 0.77 16 LS Contribution 334.94 15.07 5.05 5.05 Total: -1.00 -31.20 334.94 -8.71 -39.90 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.23 Total: 8.97 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.57 Total: -1.79 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.78 Total: -57.05 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.06 Total: -12.56 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.23 Total: 17.48 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.20 -8.71 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334943919.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.402 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds