Wall clock time and date at job start Tue Mar 31 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.49410 * 2 1 4 4 N 1.46892 * 109.49278 * 120.05818 * 2 1 3 5 5 C 1.46897 * 111.27183 * 183.06599 * 4 2 1 6 6 C 1.53239 * 109.33927 * 296.89544 * 5 4 2 7 7 N 1.47084 * 108.52085 * 53.82804 * 6 5 4 8 8 C 1.34779 * 120.88201 * 128.82329 * 7 6 5 9 9 O 1.21584 * 119.99706 * 185.25536 * 8 7 6 10 10 N 1.34776 * 119.99601 * 5.25015 * 8 7 6 11 11 C 1.46507 * 119.99387 * 185.08037 * 10 8 7 12 12 C 1.52995 * 109.46681 * 184.81734 * 11 10 8 13 13 C 1.50699 * 115.55416 * 304.75054 * 12 11 10 14 14 H 1.08002 * 119.99763 * 99.43471 * 13 12 11 15 15 C 1.37874 * 120.00213 * 279.44173 * 13 12 11 16 16 N 1.31513 * 119.99980 * 5.37033 * 15 13 12 17 17 Si 1.86804 * 120.00124 * 185.36796 * 15 13 12 18 18 H 1.48499 * 109.46811 * 270.00041 * 17 15 13 19 19 H 1.48492 * 109.47130 * 150.00300 * 17 15 13 20 20 H 1.48500 * 109.47102 * 29.99935 * 17 15 13 21 21 C 1.53008 * 117.52087 * 90.45666 * 12 11 10 22 22 C 1.52997 * 60.00113 * 107.47892 * 21 12 11 23 23 C 1.47075 * 118.23444 * 309.08741 * 7 6 5 24 24 H 1.09003 * 109.62584 * 170.62555 * 23 7 6 25 25 C 1.52997 * 109.63200 * 291.20234 * 23 7 6 26 26 H 1.08994 * 109.47354 * 299.94689 * 1 2 3 27 27 H 1.09013 * 109.47134 * 59.94385 * 1 2 3 28 28 H 1.08998 * 109.47407 * 179.97438 * 1 2 3 29 29 H 1.00901 * 111.00133 * 58.91298 * 4 2 1 30 30 H 1.08998 * 109.49791 * 176.92885 * 5 4 2 31 31 H 1.09003 * 109.49347 * 56.84979 * 5 4 2 32 32 H 1.09003 * 109.62611 * 294.11620 * 6 5 4 33 33 H 1.09000 * 109.79062 * 173.63469 * 6 5 4 34 34 H 0.96996 * 120.00590 * 5.08270 * 10 8 7 35 35 H 1.08991 * 109.47098 * 64.81825 * 11 10 8 36 36 H 1.08995 * 109.46896 * 304.81257 * 11 10 8 37 37 H 0.97001 * 119.99808 * 354.98518 * 16 15 13 38 38 H 1.09001 * 117.49711 * 214.97138 * 21 12 11 39 39 H 1.08999 * 117.49534 * 359.97438 * 21 12 11 40 40 H 1.08997 * 117.50273 * 252.51150 * 22 21 12 41 41 H 1.09001 * 117.50405 * 107.49208 * 22 21 12 42 42 H 1.08998 * 109.47292 * 60.00362 * 25 23 7 43 43 H 1.09004 * 109.47276 * 180.02562 * 25 23 7 44 44 H 1.09004 * 109.47414 * 300.00054 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 7 2.0201 -0.6936 1.1985 5 6 3.4866 -0.6534 1.2752 6 6 4.0782 -1.4041 0.0774 7 7 3.5042 -0.8433 -1.1552 8 6 4.2977 -0.4495 -2.1710 9 8 3.8144 0.0992 -3.1424 10 7 5.6269 -0.6638 -2.1097 11 6 6.5027 -0.1379 -3.1599 12 6 7.9347 -0.6193 -2.9181 13 6 8.5082 -0.2983 -1.5620 14 1 8.5208 -1.0522 -0.7888 15 6 9.0166 0.9579 -1.3082 16 7 8.9061 1.9069 -2.2120 17 14 9.8622 1.3121 0.3194 18 1 8.8593 1.7906 1.3044 19 1 10.8991 2.3565 0.1215 20 1 10.5005 0.0706 0.8260 21 6 8.3568 -1.9379 -3.5694 22 6 8.8936 -0.6113 -4.1104 23 6 2.0417 -0.7183 -1.2476 24 1 1.7788 -0.1415 -2.1344 25 6 1.4110 -2.1098 -1.3293 26 1 -0.3634 0.5130 0.8904 27 1 -0.3634 0.5148 -0.8896 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6823 -1.6438 1.2300 30 1 3.8156 -1.1271 2.2001 31 1 3.8235 0.3831 1.2572 32 1 3.8284 -2.4627 0.1491 33 1 5.1614 -1.2836 0.0648 34 1 6.0037 -1.1662 -1.3705 35 1 6.4778 0.9516 -3.1420 36 1 6.1591 -0.4933 -4.1313 37 1 8.5328 1.7049 -3.0842 38 1 9.0491 -2.5732 -3.0169 39 1 7.6140 -2.4629 -4.1700 40 1 8.5041 -0.2634 -5.0671 41 1 9.9391 -0.3737 -3.9139 42 1 1.6698 -2.6790 -0.4365 43 1 0.3273 -2.0141 -1.3981 44 1 1.7864 -2.6277 -2.2119 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334943920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:44 Heat of formation + Delta-G solvation = -3.408819 kcal Electronic energy + Delta-G solvation = -23448.617704 eV Core-core repulsion = 20208.521339 eV Total energy + Delta-G solvation = -3240.096365 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42790 -38.28666 -36.90701 -34.16985 -33.27496 -32.76602 -31.97853 -28.93873 -27.38329 -26.21975 -24.92541 -23.95867 -22.82342 -21.39112 -20.38048 -19.71850 -18.90049 -17.92946 -16.57868 -16.13758 -15.60263 -15.14987 -15.07555 -14.60344 -14.39845 -13.85991 -13.80186 -13.53735 -13.26301 -12.97881 -12.80027 -12.63786 -12.41426 -12.25898 -11.81950 -11.74332 -11.63658 -11.35829 -10.96052 -10.92067 -10.84600 -10.80596 -10.50620 -10.19720 -9.81756 -9.57425 -9.12079 -8.72588 -8.54240 -8.43689 -8.28792 -7.88631 -6.42633 -4.19928 2.92504 3.35971 3.39573 3.54593 3.67455 4.06334 4.36515 4.44206 4.70231 4.88135 4.98192 5.02994 5.05193 5.11109 5.23526 5.26609 5.32057 5.40870 5.56174 5.64682 5.68739 5.82697 5.83412 5.90316 5.92687 6.02707 6.11506 6.14557 6.23849 6.40817 6.51533 6.58642 6.73641 6.83283 6.85962 7.12554 7.16912 7.22042 7.27903 7.41628 8.13380 8.28717 8.54070 8.77806 9.11675 9.56939 10.96127 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019320 B = 0.005215 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.941272 B = 5368.082633 C = 6169.499258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 H 0.085 0.915 4 N -0.678 5.678 5 C 0.045 3.955 6 C 0.071 3.929 7 N -0.631 5.631 8 C 0.704 3.296 9 O -0.604 6.604 10 N -0.715 5.715 11 C 0.177 3.823 12 C 0.005 3.995 13 C -0.577 4.577 14 H 0.052 0.948 15 C 0.031 3.969 16 N -0.899 5.899 17 Si 1.067 2.933 18 H -0.288 1.288 19 H -0.284 1.284 20 H -0.288 1.288 21 C -0.193 4.193 22 C -0.174 4.174 23 C 0.122 3.878 24 H 0.102 0.898 25 C -0.162 4.162 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.338 0.662 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.399 0.601 35 H 0.059 0.941 36 H 0.039 0.961 37 H 0.276 0.724 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.909 -7.645 5.973 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.036 4.036 3 H 0.103 0.897 4 N -0.308 5.308 5 C -0.086 4.086 6 C -0.054 4.054 7 N -0.369 5.369 8 C 0.405 3.595 9 O -0.484 6.484 10 N -0.369 5.369 11 C 0.052 3.948 12 C 0.005 3.995 13 C -0.614 4.614 14 H 0.070 0.930 15 C -0.176 4.176 16 N -0.532 5.532 17 Si 0.895 3.105 18 H -0.215 1.215 19 H -0.210 1.210 20 H -0.214 1.214 21 C -0.230 4.230 22 C -0.212 4.212 23 C 0.016 3.984 24 H 0.120 0.880 25 C -0.221 4.221 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.156 0.844 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.236 0.764 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.577 -5.446 6.544 15.188 hybrid contribution -0.070 -2.175 -1.310 2.540 sum -12.647 -7.621 5.235 15.666 Atomic orbital electron populations 1.21840 0.93643 1.02248 1.02392 1.21849 0.95521 0.98694 0.87584 0.89690 1.60711 1.09280 1.21441 1.39368 1.22387 0.87413 1.01927 0.96856 1.22361 1.00009 0.97404 0.85666 1.47291 1.05690 1.68033 1.15920 1.15919 0.81784 0.79248 0.82510 1.90843 1.74534 1.49665 1.33319 1.45174 1.04060 1.58639 1.29053 1.20823 0.88758 0.97970 0.87208 1.19338 0.90335 0.95583 0.94294 1.21176 1.44097 1.00442 0.95707 0.92976 1.25749 0.95212 0.92266 1.04373 1.70695 1.42024 1.33901 1.06606 0.83571 0.76722 0.75653 0.74510 1.21459 1.20957 1.21439 1.22872 1.03697 0.91359 1.05111 1.22757 1.00089 1.00807 0.97545 1.21579 0.79097 0.96959 1.00744 0.87961 1.22177 1.00919 0.96964 1.02012 0.91642 0.91863 0.92234 0.84369 0.89434 0.90091 0.91935 0.89101 0.76423 0.92304 0.94290 0.91208 0.90127 0.91411 0.91294 0.89608 0.92853 0.91081 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.96 37.16 0.33 -0.92 16 2 C 0.07 0.85 2.91 -67.83 -0.20 0.65 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 4 N -0.68 -7.14 6.47 -106.72 -0.69 -7.83 16 5 C 0.04 0.51 6.70 -3.70 -0.02 0.48 16 6 C 0.07 0.90 6.07 -3.60 -0.02 0.88 16 7 N -0.63 -9.84 2.71 -170.88 -0.46 -10.30 16 8 C 0.70 14.27 8.31 -86.92 -0.72 13.55 16 9 O -0.60 -14.30 15.78 5.29 0.08 -14.22 16 10 N -0.71 -14.77 5.28 -65.23 -0.34 -15.11 16 11 C 0.18 4.09 5.50 -4.04 -0.02 4.07 16 12 C 0.01 0.13 1.05 -155.66 -0.16 -0.04 16 13 C -0.58 -14.74 8.09 -34.44 -0.28 -15.02 16 14 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 15 C 0.03 0.83 5.42 -17.82 -0.10 0.73 16 16 N -0.90 -25.77 13.61 55.43 0.75 -25.02 16 17 Si 1.07 23.87 29.91 -169.99 -5.08 18.78 16 18 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 21 C -0.19 -4.04 9.93 -26.73 -0.27 -4.30 16 22 C -0.17 -3.88 8.99 -26.73 -0.24 -4.12 16 23 C 0.12 1.62 2.83 -67.73 -0.19 1.42 16 24 H 0.10 1.59 7.04 -51.93 -0.37 1.23 16 25 C -0.16 -1.71 8.55 37.16 0.32 -1.39 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.06 0.45 6.36 -51.93 -0.33 0.12 16 29 H 0.34 3.07 7.19 -39.29 -0.28 2.79 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 33 H 0.09 1.26 5.84 -51.93 -0.30 0.95 16 34 H 0.40 7.74 5.62 -40.82 -0.23 7.51 16 35 H 0.06 1.53 7.49 -51.93 -0.39 1.14 16 36 H 0.04 0.89 8.06 -51.93 -0.42 0.47 16 37 H 0.28 7.94 5.98 -40.82 -0.24 7.69 16 38 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.09 2.02 8.14 -51.93 -0.42 1.59 16 42 H 0.05 0.50 6.12 -51.93 -0.32 0.18 16 43 H 0.07 0.61 6.38 -51.93 -0.33 0.28 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 341.34 15.07 5.14 5.14 Total: -1.00 -30.36 341.34 -9.22 -39.57 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -7.04 Total: 12.99 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.57 Total: -4.01 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.74 Total: -58.26 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.08 Total: -14.22 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.08 Total: 18.78 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.36 -9.22 -39.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334943920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.163 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds