Wall clock time and date at job start Tue Mar 31 2020 05:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.48741 * 2 1 4 4 N 1.46893 * 109.49548 * 239.94766 * 2 1 3 5 5 C 1.46900 * 111.26840 * 176.93664 * 4 2 1 6 6 C 1.53238 * 109.34058 * 63.10058 * 5 4 2 7 7 N 1.47079 * 108.52141 * 306.16859 * 6 5 4 8 8 C 1.34772 * 120.87947 * 231.18538 * 7 6 5 9 9 O 1.21582 * 119.99799 * 185.33734 * 8 7 6 10 10 N 1.34780 * 120.00218 * 5.34240 * 8 7 6 11 11 C 1.46497 * 119.99969 * 185.25759 * 10 8 7 12 12 C 1.52997 * 109.47036 * 184.79179 * 11 10 8 13 13 C 1.50700 * 115.54942 * 303.90040 * 12 11 10 14 14 H 1.07994 * 119.99999 * 95.40244 * 13 12 11 15 15 C 1.37878 * 119.99976 * 275.39632 * 13 12 11 16 16 N 1.31515 * 120.00003 * 5.94679 * 15 13 12 17 17 Si 1.86801 * 119.99999 * 185.94167 * 15 13 12 18 18 H 1.48494 * 109.46985 * 180.02562 * 17 15 13 19 19 H 1.48496 * 109.46829 * 300.00147 * 17 15 13 20 20 H 1.48493 * 109.47188 * 60.00143 * 17 15 13 21 21 C 1.53008 * 117.49791 * 89.57240 * 12 11 10 22 22 C 1.53002 * 117.49707 * 158.22954 * 12 11 10 23 23 C 1.47077 * 118.23360 * 51.46420 * 7 6 5 24 24 H 1.08996 * 109.63624 * 68.24791 * 23 7 6 25 25 C 1.52998 * 109.62414 * 188.83097 * 23 7 6 26 26 H 1.09004 * 109.46887 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47492 * 300.05196 * 1 2 3 28 28 H 1.09005 * 109.47071 * 60.05926 * 1 2 3 29 29 H 1.00903 * 110.99823 * 301.08182 * 4 2 1 30 30 H 1.09000 * 109.49287 * 303.13787 * 5 4 2 31 31 H 1.08999 * 109.51384 * 183.07563 * 5 4 2 32 32 H 1.09001 * 109.62731 * 186.45621 * 6 5 4 33 33 H 1.09001 * 109.62820 * 65.88453 * 6 5 4 34 34 H 0.96995 * 119.99937 * 5.25267 * 10 8 7 35 35 H 1.09003 * 109.47087 * 64.78903 * 11 10 8 36 36 H 1.09005 * 109.47234 * 304.79450 * 11 10 8 37 37 H 0.97008 * 120.00153 * 355.15784 * 16 15 13 38 38 H 1.08994 * 117.49463 * 215.00063 * 21 12 11 39 39 H 1.08997 * 117.49899 * 0.02562 * 21 12 11 40 40 H 1.09001 * 117.50092 * 359.97438 * 22 12 11 41 41 H 1.09005 * 117.49757 * 144.99418 * 22 12 11 42 42 H 1.08997 * 109.47643 * 51.14346 * 25 23 7 43 43 H 1.09005 * 109.47112 * 171.14052 * 25 23 7 44 44 H 1.09000 * 109.47266 * 291.14368 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 7 2.0202 -0.6935 -1.1986 5 6 3.4867 -0.6532 -1.2751 6 6 4.0782 -1.4040 -0.0773 7 7 3.5042 -0.8432 1.1553 8 6 4.2977 -0.4493 2.1710 9 8 3.8049 -0.0791 3.2190 10 7 5.6374 -0.4657 2.0249 11 6 6.5024 -0.1484 3.1639 12 6 7.9614 -0.1215 2.7044 13 6 8.4563 -1.3793 2.0380 14 1 8.4461 -1.4597 0.9611 15 6 8.9222 -2.4273 2.8032 16 7 8.8270 -2.3778 4.1139 17 14 9.6887 -3.9177 1.9781 18 1 10.1058 -4.8968 3.0136 19 1 8.6944 -4.5484 1.0732 20 1 10.8744 -3.4929 1.1916 21 6 8.5189 1.2114 2.2005 22 6 8.9574 0.6632 3.5608 23 6 2.0410 -0.7297 1.2525 24 1 1.5992 -1.7246 1.3061 25 6 1.6697 0.0701 2.5028 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5146 0.8895 28 1 -0.3633 0.5129 -0.8906 29 1 1.6825 -1.6437 -1.2300 30 1 3.8235 0.3833 -1.2572 31 1 3.8161 -1.1267 -2.1999 32 1 5.1611 -1.2804 -0.0662 33 1 3.8285 -2.4625 -0.1491 34 1 6.0289 -0.6876 1.1657 35 1 6.3787 -0.9074 3.9365 36 1 6.2300 0.8273 3.5663 37 1 8.4940 -1.5756 4.5461 38 1 9.2435 1.1784 1.3870 39 1 7.8462 2.0690 2.1968 40 1 8.5731 1.1605 4.4513 41 1 9.9706 0.2696 3.6422 42 1 2.2308 1.0044 2.5166 43 1 0.6017 0.2879 2.4909 44 1 1.9118 -0.5123 3.3919 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334943921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:46 Heat of formation + Delta-G solvation = 8.771411 kcal Electronic energy + Delta-G solvation = -23467.862933 eV Core-core repulsion = 20228.294743 eV Total energy + Delta-G solvation = -3239.568191 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.48125 -38.10958 -36.92788 -34.41391 -33.44667 -32.70512 -31.94579 -28.67206 -27.39998 -26.09393 -24.90773 -23.78761 -22.32629 -21.40156 -21.00060 -19.72453 -19.32624 -17.59921 -16.63553 -16.02456 -15.76639 -15.34855 -14.91759 -14.56951 -14.07128 -13.89255 -13.80035 -13.70042 -13.04544 -12.99466 -12.79340 -12.54164 -12.33777 -12.08877 -11.87610 -11.73809 -11.67257 -11.30059 -11.02784 -10.95915 -10.91655 -10.84421 -10.50281 -10.18739 -9.69375 -9.38567 -8.85433 -8.70432 -8.51244 -8.44190 -8.23633 -7.88832 -6.43023 -4.19798 2.92260 3.35666 3.37615 3.56255 3.66946 4.01937 4.33218 4.43954 4.65442 4.90809 4.97352 4.98906 5.07087 5.10960 5.26101 5.28953 5.38353 5.47921 5.59260 5.64730 5.83039 5.84846 5.85646 5.91074 6.01054 6.12374 6.23058 6.29704 6.40383 6.49668 6.53019 6.63022 6.75389 6.83105 6.88888 7.13586 7.16671 7.17768 7.29288 7.39936 8.13132 8.28265 8.53822 8.77741 9.13216 9.56941 10.96162 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.004906 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.157667 B = 5705.410938 C = 6211.858729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 H 0.084 0.916 4 N -0.680 5.680 5 C 0.044 3.956 6 C 0.072 3.928 7 N -0.634 5.634 8 C 0.703 3.297 9 O -0.595 6.595 10 N -0.717 5.717 11 C 0.178 3.822 12 C 0.005 3.995 13 C -0.577 4.577 14 H 0.051 0.949 15 C 0.030 3.970 16 N -0.899 5.899 17 Si 1.066 2.934 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.288 1.288 21 C -0.194 4.194 22 C -0.172 4.172 23 C 0.132 3.868 24 H 0.063 0.937 25 C -0.132 4.132 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.339 0.661 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.397 0.603 35 H 0.057 0.943 36 H 0.039 0.961 37 H 0.276 0.724 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.434 2.856 -9.693 16.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.039 4.039 3 H 0.102 0.898 4 N -0.309 5.309 5 C -0.086 4.086 6 C -0.053 4.053 7 N -0.374 5.374 8 C 0.405 3.595 9 O -0.475 6.475 10 N -0.372 5.372 11 C 0.054 3.946 12 C 0.004 3.996 13 C -0.614 4.614 14 H 0.070 0.930 15 C -0.177 4.177 16 N -0.532 5.532 17 Si 0.894 3.106 18 H -0.208 1.208 19 H -0.216 1.216 20 H -0.214 1.214 21 C -0.231 4.231 22 C -0.210 4.210 23 C 0.026 3.974 24 H 0.081 0.919 25 C -0.190 4.190 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.157 0.843 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.234 0.766 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.192 2.165 -8.998 15.307 hybrid contribution 0.014 0.683 -0.055 0.685 sum -12.178 2.847 -9.053 15.439 Atomic orbital electron populations 1.21808 0.93651 1.02165 1.02448 1.22127 0.95583 0.98690 0.87506 0.89771 1.60721 1.09230 1.21533 1.39423 1.22405 0.87597 1.01550 0.97074 1.22384 0.99838 0.97743 0.85345 1.47325 1.05773 1.67764 1.16510 1.15963 0.81728 0.78694 0.83148 1.90890 1.73395 1.55497 1.27714 1.45286 1.03310 1.73162 1.15468 1.20814 0.89075 0.97963 0.86779 1.19335 0.89318 0.91582 0.99374 1.21138 1.46933 0.99667 0.93687 0.93039 1.25754 0.94810 1.01345 0.95745 1.70727 1.42681 1.30582 1.09248 0.83587 0.76335 0.75562 0.75112 1.20774 1.21552 1.21411 1.22906 1.04293 0.98121 0.97782 1.22742 1.00796 1.04850 0.92616 1.21888 0.79122 0.99125 0.97272 0.91866 1.22114 0.98459 1.01524 0.96882 0.92646 0.91516 0.91674 0.84303 0.90403 0.89394 0.89236 0.91574 0.76592 0.92473 0.94274 0.91209 0.90117 0.91430 0.91278 0.89559 0.91571 0.93947 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.27 37.16 0.34 -0.89 16 2 C 0.07 0.79 2.65 -67.35 -0.18 0.61 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 N -0.68 -6.88 6.48 -106.21 -0.69 -7.57 16 5 C 0.04 0.46 6.70 -3.70 -0.02 0.44 16 6 C 0.07 0.91 6.58 -3.60 -0.02 0.89 16 7 N -0.63 -9.82 3.00 -170.35 -0.51 -10.33 16 8 C 0.70 13.83 8.09 -86.92 -0.70 13.13 16 9 O -0.60 -13.21 12.02 5.29 0.06 -13.15 16 10 N -0.72 -14.57 5.32 -65.23 -0.35 -14.92 16 11 C 0.18 4.06 5.53 -4.04 -0.02 4.04 16 12 C 0.00 0.11 1.08 -155.66 -0.17 -0.06 16 13 C -0.58 -14.76 8.15 -34.44 -0.28 -15.04 16 14 H 0.05 1.30 7.82 -52.49 -0.41 0.89 16 15 C 0.03 0.81 5.39 -17.82 -0.10 0.72 16 16 N -0.90 -25.76 13.57 55.43 0.75 -25.01 16 17 Si 1.07 23.86 29.91 -169.99 -5.08 18.77 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 20 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 21 C -0.19 -4.04 9.93 -26.69 -0.27 -4.30 16 22 C -0.17 -3.84 8.69 -26.69 -0.23 -4.07 16 23 C 0.13 1.74 3.10 -67.25 -0.21 1.54 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 C -0.13 -1.93 7.56 37.16 0.28 -1.65 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.56 6.51 -51.93 -0.34 0.22 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.34 3.05 8.78 -39.29 -0.35 2.70 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.20 5.63 -51.93 -0.29 0.91 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 7.63 5.53 -40.82 -0.23 7.40 16 35 H 0.06 1.47 7.81 -51.93 -0.41 1.07 16 36 H 0.04 0.88 8.06 -51.93 -0.42 0.46 16 37 H 0.28 7.91 6.15 -40.82 -0.25 7.66 16 38 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.09 2.05 8.14 -51.93 -0.42 1.62 16 42 H 0.07 1.11 6.91 -51.93 -0.36 0.75 16 43 H 0.04 0.49 6.35 -51.93 -0.33 0.16 16 44 H 0.08 1.37 6.65 -51.93 -0.35 1.02 16 LS Contribution 340.11 15.07 5.13 5.13 Total: -1.00 -29.61 340.11 -9.43 -39.04 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -7.17 Total: 12.70 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.58 Total: -4.65 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.79 Total: -57.83 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.06 Total: -13.15 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.08 Total: 18.77 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.61 -9.43 -39.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334943921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.811 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds