Wall clock time and date at job start Tue Mar 31 2020 05:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.48741 * 2 1 4 4 N 1.46893 * 109.49548 * 239.94766 * 2 1 3 5 5 C 1.46900 * 111.26840 * 176.93664 * 4 2 1 6 6 C 1.53238 * 109.34058 * 63.10058 * 5 4 2 7 7 N 1.47079 * 108.52141 * 306.16859 * 6 5 4 8 8 C 1.34772 * 120.87947 * 231.18538 * 7 6 5 9 9 O 1.21582 * 119.99799 * 185.33734 * 8 7 6 10 10 N 1.34780 * 120.00218 * 5.34240 * 8 7 6 11 11 C 1.46497 * 119.99969 * 185.25759 * 10 8 7 12 12 C 1.52997 * 109.47036 * 184.79179 * 11 10 8 13 13 C 1.50700 * 115.54942 * 303.90040 * 12 11 10 14 14 H 1.07994 * 119.99999 * 95.40244 * 13 12 11 15 15 C 1.37878 * 119.99976 * 275.39632 * 13 12 11 16 16 N 1.31515 * 120.00003 * 5.94679 * 15 13 12 17 17 Si 1.86801 * 119.99999 * 185.94167 * 15 13 12 18 18 H 1.48494 * 109.46985 * 180.02562 * 17 15 13 19 19 H 1.48496 * 109.46829 * 300.00147 * 17 15 13 20 20 H 1.48493 * 109.47188 * 60.00143 * 17 15 13 21 21 C 1.53008 * 117.49791 * 89.57240 * 12 11 10 22 22 C 1.53002 * 117.49707 * 158.22954 * 12 11 10 23 23 C 1.47077 * 118.23360 * 51.46420 * 7 6 5 24 24 H 1.08996 * 109.63624 * 68.24791 * 23 7 6 25 25 C 1.52998 * 109.62414 * 188.83097 * 23 7 6 26 26 H 1.09004 * 109.46887 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47492 * 300.05196 * 1 2 3 28 28 H 1.09005 * 109.47071 * 60.05926 * 1 2 3 29 29 H 1.00903 * 110.99823 * 301.08182 * 4 2 1 30 30 H 1.09000 * 109.49287 * 303.13787 * 5 4 2 31 31 H 1.08999 * 109.51384 * 183.07563 * 5 4 2 32 32 H 1.09001 * 109.62731 * 186.45621 * 6 5 4 33 33 H 1.09001 * 109.62820 * 65.88453 * 6 5 4 34 34 H 0.96995 * 119.99937 * 5.25267 * 10 8 7 35 35 H 1.09003 * 109.47087 * 64.78903 * 11 10 8 36 36 H 1.09005 * 109.47234 * 304.79450 * 11 10 8 37 37 H 0.97008 * 120.00153 * 355.15784 * 16 15 13 38 38 H 1.08994 * 117.49463 * 215.00063 * 21 12 11 39 39 H 1.08997 * 117.49899 * 0.02562 * 21 12 11 40 40 H 1.09001 * 117.50092 * 359.97438 * 22 12 11 41 41 H 1.09005 * 117.49757 * 144.99418 * 22 12 11 42 42 H 1.08997 * 109.47643 * 51.14346 * 25 23 7 43 43 H 1.09005 * 109.47112 * 171.14052 * 25 23 7 44 44 H 1.09000 * 109.47266 * 291.14368 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 7 2.0202 -0.6935 -1.1986 5 6 3.4867 -0.6532 -1.2751 6 6 4.0782 -1.4040 -0.0773 7 7 3.5042 -0.8432 1.1553 8 6 4.2977 -0.4493 2.1710 9 8 3.8049 -0.0791 3.2190 10 7 5.6374 -0.4657 2.0249 11 6 6.5024 -0.1484 3.1639 12 6 7.9614 -0.1215 2.7044 13 6 8.4563 -1.3793 2.0380 14 1 8.4461 -1.4597 0.9611 15 6 8.9222 -2.4273 2.8032 16 7 8.8270 -2.3778 4.1139 17 14 9.6887 -3.9177 1.9781 18 1 10.1058 -4.8968 3.0136 19 1 8.6944 -4.5484 1.0732 20 1 10.8744 -3.4929 1.1916 21 6 8.5189 1.2114 2.2005 22 6 8.9574 0.6632 3.5608 23 6 2.0410 -0.7297 1.2525 24 1 1.5992 -1.7246 1.3061 25 6 1.6697 0.0701 2.5028 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5146 0.8895 28 1 -0.3633 0.5129 -0.8906 29 1 1.6825 -1.6437 -1.2300 30 1 3.8235 0.3833 -1.2572 31 1 3.8161 -1.1267 -2.1999 32 1 5.1611 -1.2804 -0.0662 33 1 3.8285 -2.4625 -0.1491 34 1 6.0289 -0.6876 1.1657 35 1 6.3787 -0.9074 3.9365 36 1 6.2300 0.8273 3.5663 37 1 8.4940 -1.5756 4.5461 38 1 9.2435 1.1784 1.3870 39 1 7.8462 2.0690 2.1968 40 1 8.5731 1.1605 4.4513 41 1 9.9706 0.2696 3.6422 42 1 2.2308 1.0044 2.5166 43 1 0.6017 0.2879 2.4909 44 1 1.9118 -0.5123 3.3919 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334943921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:46 Heat of formation + Delta-G solvation = -11.071927 kcal Electronic energy + Delta-G solvation = -23468.723405 eV Core-core repulsion = 20228.294743 eV Total energy + Delta-G solvation = -3240.428662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.79822 -39.49982 -38.58040 -35.78536 -34.66210 -34.02159 -33.87357 -29.78800 -28.36392 -27.74334 -26.87713 -24.96745 -23.32461 -23.13430 -22.06366 -21.55965 -20.79610 -19.08457 -18.37484 -17.43900 -17.01514 -16.37223 -16.15868 -15.87049 -15.63940 -15.52355 -15.31777 -14.83763 -14.64501 -14.43737 -14.29827 -13.94166 -13.64549 -13.41943 -13.13106 -12.87376 -12.78653 -12.63209 -12.62173 -12.26615 -12.24198 -11.96786 -11.95305 -11.84666 -11.49801 -10.74096 -10.56142 -10.47082 -10.34616 -10.17977 -9.83820 -9.02766 -8.52873 -6.29442 1.55517 1.59109 1.62147 1.80170 2.12763 2.58656 2.88571 3.18178 3.24053 3.31665 3.68927 3.94610 3.97269 4.00399 4.06015 4.14628 4.32690 4.34519 4.41826 4.44376 4.52935 4.54374 4.70623 4.76183 4.77580 4.80605 4.92597 4.98733 5.03031 5.07032 5.14040 5.22563 5.28572 5.39722 5.42269 5.62971 5.66214 5.91118 5.93542 6.12186 6.24896 6.42922 6.68171 7.01771 7.54374 7.59102 8.86516 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.004906 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.157667 B = 5705.410938 C = 6211.858729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.068 0.932 4 N -0.674 5.674 5 C 0.053 3.947 6 C 0.068 3.932 7 N -0.630 5.630 8 C 0.695 3.305 9 O -0.627 6.627 10 N -0.717 5.717 11 C 0.195 3.805 12 C -0.019 4.019 13 C -0.573 4.573 14 H 0.055 0.945 15 C -0.018 4.018 16 N -0.932 5.932 17 Si 1.109 2.891 18 H -0.294 1.294 19 H -0.271 1.271 20 H -0.271 1.271 21 C -0.165 4.165 22 C -0.177 4.177 23 C 0.126 3.874 24 H 0.076 0.924 25 C -0.122 4.122 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.350 0.650 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.403 0.597 35 H 0.017 0.983 36 H 0.037 0.963 37 H 0.264 0.736 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.566 2.640 -12.463 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 H 0.086 0.914 4 N -0.304 5.304 5 C -0.077 4.077 6 C -0.056 4.056 7 N -0.368 5.368 8 C 0.396 3.604 9 O -0.510 6.510 10 N -0.373 5.373 11 C 0.070 3.930 12 C -0.020 4.020 13 C -0.611 4.611 14 H 0.073 0.927 15 C -0.219 4.219 16 N -0.568 5.568 17 Si 0.932 3.068 18 H -0.220 1.220 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.202 4.202 22 C -0.215 4.215 23 C 0.022 3.978 24 H 0.094 0.906 25 C -0.180 4.180 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.169 0.831 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.241 0.759 35 H 0.036 0.964 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.357 1.951 -11.838 17.954 hybrid contribution 0.307 0.785 0.792 1.156 sum -13.050 2.735 -11.046 17.315 Atomic orbital electron populations 1.21778 0.91502 1.03197 1.03009 1.22023 0.97105 0.97426 0.86370 0.91405 1.60728 1.08891 1.22289 1.38453 1.22381 0.87635 1.00808 0.96896 1.22630 0.99410 0.98751 0.84856 1.47438 1.06468 1.66581 1.16326 1.16207 0.81683 0.78741 0.83727 1.90883 1.73859 1.56858 1.29371 1.45144 1.03572 1.73649 1.14927 1.20414 0.89417 0.96440 0.86725 1.19357 0.89483 0.92319 1.00818 1.21406 1.45560 1.00259 0.93861 0.92710 1.27017 0.95032 1.04235 0.95586 1.70838 1.45069 1.30417 1.10463 0.83027 0.76594 0.72721 0.74465 1.21999 1.19598 1.19607 1.22905 1.03568 0.97025 0.96687 1.22683 0.99610 1.05148 0.94035 1.22162 0.77770 0.99922 0.97967 0.90615 1.21928 1.00061 0.99762 0.96267 0.91366 0.91201 0.90896 0.83051 0.91480 0.86745 0.90211 0.90194 0.75918 0.96431 0.94434 0.92537 0.89404 0.89405 0.90300 0.91335 0.94258 0.90704 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.27 71.98 0.67 -1.28 16 2 C 0.08 1.60 2.65 45.15 0.12 1.72 16 3 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 4 N -0.67 -11.52 6.48 -489.94 -3.18 -14.70 16 5 C 0.05 0.97 6.70 86.38 0.58 1.54 16 6 C 0.07 1.59 6.58 86.35 0.57 2.16 16 7 N -0.63 -19.08 3.00 -811.12 -2.44 -21.52 16 8 C 0.69 27.80 8.09 179.05 1.45 29.25 16 9 O -0.63 -28.92 12.02 -3.97 -0.05 -28.97 16 10 N -0.72 -29.51 5.32 -478.54 -2.55 -32.06 16 11 C 0.20 9.17 5.53 86.38 0.48 9.64 16 12 C -0.02 -0.89 1.08 -52.93 -0.06 -0.94 16 13 C -0.57 -29.23 8.15 25.60 0.21 -29.02 16 14 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 15 C -0.02 -0.98 5.39 84.65 0.46 -0.52 16 16 N -0.93 -54.78 13.57 21.45 0.29 -54.49 16 17 Si 1.11 47.66 29.91 68.60 2.05 49.71 16 18 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 C -0.16 -6.64 9.93 30.62 0.30 -6.34 16 22 C -0.18 -7.93 8.69 30.62 0.27 -7.66 16 23 C 0.13 3.18 3.10 45.12 0.14 3.32 16 24 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 25 C -0.12 -3.56 7.56 71.98 0.54 -3.01 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.96 6.51 -2.39 -0.02 0.94 16 28 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.35 4.95 8.78 -89.69 -0.79 4.16 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 2.04 5.63 -2.39 -0.01 2.02 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.40 15.39 5.53 -92.71 -0.51 14.88 16 35 H 0.02 0.95 7.81 -2.39 -0.02 0.93 16 36 H 0.04 1.74 8.06 -2.38 -0.02 1.72 16 37 H 0.26 15.73 6.15 -92.70 -0.57 15.16 16 38 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.07 3.30 8.14 -2.38 -0.02 3.28 16 42 H 0.04 1.34 6.91 -2.39 -0.02 1.32 16 43 H 0.07 1.64 6.35 -2.38 -0.02 1.62 16 44 H 0.04 1.63 6.65 -2.39 -0.02 1.61 16 Total: -1.00 -65.62 340.11 -0.24 -65.86 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: -0.10 Total: 37.31 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 5.72 Total: -1.14 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -7.87 Total: -122.76 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.05 Total: -28.97 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.05 Total: 49.71 kcal Total: -65.62 -0.24 -65.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334943921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.786 kcal (2) G-P(sol) polarization free energy of solvation -65.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds