Wall clock time and date at job start Tue Mar 31 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.62330 * 2 1 4 4 C 1.53242 * 109.62859 * 239.61942 * 2 1 3 5 5 H 1.09006 * 109.49360 * 174.15473 * 4 2 1 6 6 C 1.53002 * 109.49393 * 54.07904 * 4 2 1 7 7 N 1.47325 * 109.11022 * 293.94112 * 4 2 1 8 8 C 1.46901 * 111.36774 * 296.99577 * 7 4 2 9 9 C 1.53241 * 109.33824 * 63.12045 * 8 7 4 10 10 N 1.47077 * 108.52447 * 306.17243 * 9 8 7 11 11 C 1.34774 * 120.88404 * 231.16445 * 10 9 8 12 12 O 1.21581 * 120.00224 * 174.82813 * 11 10 9 13 13 N 1.34774 * 119.99926 * 354.81809 * 11 10 9 14 14 C 1.46493 * 120.00249 * 185.12775 * 13 11 10 15 15 C 1.52998 * 109.47167 * 185.00277 * 14 13 11 16 16 C 1.50698 * 115.55148 * 275.42224 * 15 14 13 17 17 H 1.07995 * 119.99858 * 116.00654 * 16 15 14 18 18 C 1.37873 * 119.99981 * 295.99992 * 16 15 14 19 19 N 1.31509 * 120.00308 * 352.88325 * 18 16 15 20 20 Si 1.86808 * 120.00005 * 172.87781 * 18 16 15 21 21 H 1.48498 * 109.46906 * 90.00314 * 20 18 16 22 22 H 1.48497 * 109.47354 * 210.00286 * 20 18 16 23 23 H 1.48497 * 109.46839 * 330.00711 * 20 18 16 24 24 C 1.53001 * 117.49680 * 129.71652 * 15 14 13 25 25 C 1.53000 * 117.49860 * 61.09434 * 15 14 13 26 26 H 1.08993 * 109.47260 * 299.99151 * 1 2 3 27 27 H 1.09004 * 109.46864 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47083 * 59.99858 * 1 2 3 29 29 H 1.08998 * 109.47370 * 59.99726 * 6 4 2 30 30 H 1.09001 * 109.47215 * 180.02562 * 6 4 2 31 31 H 1.09002 * 109.46621 * 299.99777 * 6 4 2 32 32 H 1.00901 * 110.96075 * 61.18793 * 7 4 2 33 33 H 1.09006 * 109.49171 * 303.16488 * 8 7 4 34 34 H 1.08991 * 109.51805 * 183.09755 * 8 7 4 35 35 H 1.08995 * 109.63005 * 186.45986 * 9 8 7 36 36 H 1.09000 * 109.62601 * 65.88335 * 9 8 7 37 37 H 0.97005 * 119.99597 * 5.13470 * 13 11 10 38 38 H 1.08997 * 109.47612 * 305.00731 * 14 13 11 39 39 H 1.09004 * 109.46894 * 65.00855 * 14 13 11 40 40 H 0.97003 * 120.00101 * 185.00421 * 19 18 16 41 41 H 1.09001 * 117.50000 * 359.97438 * 24 15 14 42 42 H 1.08999 * 117.50206 * 145.02198 * 24 15 14 43 43 H 1.08996 * 117.49988 * 214.97502 * 25 15 14 44 44 H 1.08996 * 117.49684 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0268 0.0000 4 6 2.0448 -0.7300 -1.2452 5 1 3.1298 -0.6393 -1.2974 6 6 1.4193 -0.1093 -2.4960 7 7 1.6747 -2.1533 -1.1573 8 6 2.3148 -2.8026 -0.0056 9 6 1.8112 -2.1531 1.2878 10 7 2.0242 -0.7008 1.1950 11 6 2.6550 -0.0299 2.1790 12 8 2.9062 1.1521 2.0447 13 7 3.0073 -0.6691 3.3119 14 6 3.5910 0.0823 4.4258 15 6 4.0124 -0.8885 5.5307 16 6 2.9252 -1.2873 6.4950 17 1 2.6020 -2.3164 6.5489 18 6 2.3432 -0.3385 7.3086 19 7 2.8288 0.8831 7.3457 20 14 0.8646 -0.7881 8.3581 21 1 1.3276 -1.2787 9.6811 22 1 0.0085 0.4105 8.5466 23 1 0.0826 -1.8535 7.6810 24 6 5.4333 -0.7570 6.0825 25 6 5.0684 -1.9395 5.1827 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 1.6921 0.9444 -2.5540 30 1 1.7853 -0.6291 -3.3814 31 1 0.3345 -0.2014 -2.4435 32 1 0.6724 -2.2642 -1.1240 33 1 3.3961 -2.6834 -0.0753 34 1 2.0656 -3.8637 -0.0008 35 1 2.3659 -2.5510 2.1375 36 1 0.7482 -2.3601 1.4116 37 1 2.8745 -1.6269 3.3897 38 1 4.4630 0.6339 4.0748 39 1 2.8527 0.7815 4.8187 40 1 2.4662 1.5304 7.9706 41 1 6.0681 0.0208 5.6580 42 1 5.5821 -0.9589 7.1432 43 1 4.9771 -2.9192 5.6515 44 1 5.4626 -1.9395 4.1665 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334943922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:49 Heat of formation + Delta-G solvation = 2.805032 kcal Electronic energy + Delta-G solvation = -23306.710628 eV Core-core repulsion = 20066.883715 eV Total energy + Delta-G solvation = -3239.826912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.40366 -38.21938 -36.65938 -34.14642 -33.22658 -32.70250 -32.06616 -28.92434 -27.41451 -26.29583 -25.23196 -23.88330 -22.85869 -21.30772 -20.33862 -19.39752 -18.90460 -17.92323 -16.28318 -15.89409 -15.60463 -15.18239 -15.06892 -14.67072 -14.50807 -14.20356 -13.73519 -13.51312 -13.31163 -12.95721 -12.84826 -12.48442 -12.28552 -11.81148 -11.75997 -11.68363 -11.56128 -11.36803 -11.01832 -10.96517 -10.90617 -10.82687 -10.54870 -10.32050 -9.73645 -9.47336 -9.12640 -9.06241 -8.62935 -8.31115 -8.20715 -7.86020 -6.09736 -4.16674 2.94128 3.24284 3.32576 3.33971 3.70663 4.00679 4.33146 4.39549 4.67923 4.87460 4.94509 4.99272 5.03441 5.12569 5.22864 5.31688 5.34103 5.39888 5.55936 5.61300 5.68007 5.82734 5.85361 5.88983 5.98518 6.02626 6.16789 6.29650 6.46120 6.60245 6.64112 6.67873 6.80504 6.89372 7.02897 7.17937 7.30254 7.33085 7.49418 7.53398 7.82695 8.32931 8.54927 8.82744 9.15733 9.48195 10.97937 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021782 B = 0.004598 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.148001 B = 6088.549492 C = 6400.523835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.122 3.878 3 H 0.103 0.897 4 C 0.075 3.925 5 H 0.084 0.916 6 C -0.144 4.144 7 N -0.680 5.680 8 C 0.045 3.955 9 C 0.072 3.928 10 N -0.633 5.633 11 C 0.703 3.297 12 O -0.599 6.599 13 N -0.725 5.725 14 C 0.180 3.820 15 C 0.035 3.965 16 C -0.500 4.500 17 H 0.060 0.940 18 C 0.073 3.927 19 N -0.874 5.874 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.165 4.165 25 C -0.208 4.208 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.339 0.661 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.392 0.608 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.263 0.737 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 -6.041 -15.696 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 H 0.121 0.879 4 C -0.035 4.035 5 H 0.102 0.898 6 C -0.202 4.202 7 N -0.310 5.310 8 C -0.085 4.085 9 C -0.053 4.053 10 N -0.371 5.371 11 C 0.405 3.595 12 O -0.478 6.478 13 N -0.379 5.379 14 C 0.057 3.943 15 C 0.034 3.966 16 C -0.537 4.537 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.510 5.510 20 Si 0.718 3.282 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.204 4.204 25 C -0.246 4.246 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.158 0.842 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.228 0.772 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.987 -5.142 -16.130 17.191 hybrid contribution -1.324 -0.316 1.662 2.148 sum -4.311 -5.458 -14.469 16.053 Atomic orbital electron populations 1.22174 0.95530 1.01762 1.02691 1.21663 0.93777 0.98526 0.84408 0.87923 1.22009 1.00723 0.87206 0.93608 0.89787 1.21834 1.00927 1.00557 0.96854 1.60802 1.14398 1.13523 1.42247 1.22389 1.00267 0.98282 0.87591 1.22331 1.01337 0.81519 1.00120 1.47327 1.62125 1.07219 1.20474 1.15936 0.78547 0.84884 0.80162 1.90859 1.61471 1.14564 1.80869 1.45476 1.66417 1.11655 1.14394 1.20899 0.96967 0.93516 0.82936 1.19084 0.88649 0.94075 0.94759 1.20414 1.18302 0.94395 1.20591 0.92179 1.24981 0.96743 0.94792 0.96616 1.69956 1.41428 1.03930 1.35664 0.86619 0.83013 0.78013 0.80550 1.20627 1.21121 1.19846 1.22722 1.01311 0.98359 0.97988 1.22872 1.08560 0.94637 0.98504 0.92014 0.92890 0.91124 0.91795 0.91702 0.92172 0.84231 0.90406 0.89518 0.89580 0.91685 0.77237 0.94335 0.90295 0.92731 0.91609 0.89984 0.90420 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.57 37.16 0.32 -1.47 16 2 C 0.12 1.59 2.83 -67.49 -0.19 1.40 16 3 H 0.10 1.58 7.04 -51.92 -0.37 1.22 16 4 C 0.08 0.80 2.95 -67.35 -0.20 0.60 16 5 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 6 C -0.14 -1.19 8.99 37.16 0.33 -0.86 16 7 N -0.68 -6.55 6.49 -106.15 -0.69 -7.24 16 8 C 0.05 0.44 6.71 -3.70 -0.02 0.42 16 9 C 0.07 0.85 6.11 -3.60 -0.02 0.83 16 10 N -0.63 -9.55 2.71 -170.61 -0.46 -10.01 16 11 C 0.70 14.05 8.30 -86.92 -0.72 13.33 16 12 O -0.60 -14.25 15.77 5.29 0.08 -14.17 16 13 N -0.73 -14.60 5.37 -65.23 -0.35 -14.95 16 14 C 0.18 4.28 5.51 -4.05 -0.02 4.25 16 15 C 0.04 0.84 1.34 -155.66 -0.21 0.63 16 16 C -0.50 -12.99 8.84 -34.44 -0.30 -13.30 16 17 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 18 C 0.07 1.95 5.22 -17.82 -0.09 1.85 16 19 N -0.87 -24.47 12.46 55.43 0.69 -23.78 16 20 Si 0.89 20.67 29.55 -169.99 -5.02 15.65 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.17 -3.75 9.88 -26.73 -0.26 -4.02 16 25 C -0.21 -4.27 9.77 -26.73 -0.26 -4.53 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.51 6.10 -51.93 -0.32 0.20 16 28 H 0.07 0.63 6.38 -51.93 -0.33 0.30 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.45 6.37 -51.93 -0.33 0.11 16 32 H 0.34 2.92 7.20 -39.29 -0.28 2.63 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.03 5.74 -51.93 -0.30 0.74 16 36 H 0.06 0.71 7.62 -51.93 -0.40 0.31 16 37 H 0.39 7.08 5.94 -40.82 -0.24 6.84 16 38 H 0.04 0.94 7.86 -51.93 -0.41 0.53 16 39 H 0.08 2.17 7.12 -51.93 -0.37 1.80 16 40 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 41 H 0.07 1.44 8.05 -51.93 -0.42 1.02 16 42 H 0.08 1.93 8.14 -51.93 -0.42 1.50 16 43 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -30.18 343.54 -9.34 -39.52 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -7.11 Total: 10.69 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.66 Total: -0.87 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.81 Total: -55.99 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.08 Total: -14.17 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.18 -9.34 -39.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334943922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.325 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds