Wall clock time and date at job start Tue Mar 31 2020 05:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.49145 * 2 1 4 4 C 1.53232 * 109.49437 * 120.05556 * 2 1 3 5 5 N 1.47075 * 108.52580 * 66.13002 * 4 2 1 6 6 C 1.34778 * 120.88445 * 231.16843 * 5 4 2 7 7 O 1.21584 * 119.99836 * 354.98518 * 6 5 4 8 8 N 1.34778 * 119.99671 * 174.99589 * 6 5 4 9 9 C 1.46504 * 119.99461 * 184.63072 * 8 6 5 10 10 C 1.52994 * 109.47103 * 184.86508 * 9 8 6 11 11 C 1.50700 * 115.54806 * 305.45856 * 10 9 8 12 12 H 1.08011 * 120.00418 * 144.65042 * 11 10 9 13 13 C 1.37874 * 120.00309 * 324.64413 * 11 10 9 14 14 N 1.31519 * 119.99764 * 2.98726 * 13 11 10 15 15 Si 1.86803 * 120.00510 * 182.98968 * 13 11 10 16 16 H 1.48498 * 109.46952 * 59.99742 * 15 13 11 17 17 H 1.48496 * 109.47251 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46950 * 299.99898 * 15 13 11 19 19 C 1.52997 * 117.50308 * 159.78961 * 10 9 8 20 20 C 1.53000 * 117.50100 * 91.12445 * 10 9 8 21 21 C 1.47083 * 118.23534 * 51.18371 * 5 4 2 22 22 C 1.53243 * 108.52091 * 308.81719 * 21 5 4 23 23 N 1.46894 * 109.49286 * 239.94987 * 2 1 3 24 24 H 1.09001 * 109.47300 * 59.99517 * 1 2 3 25 25 H 1.08997 * 109.47557 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47178 * 299.99580 * 1 2 3 27 27 H 1.09000 * 109.46855 * 60.00129 * 3 2 1 28 28 H 1.09002 * 109.47028 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47013 * 300.00252 * 3 2 1 30 30 H 1.09003 * 109.62830 * 185.84194 * 4 2 1 31 31 H 1.09003 * 109.62998 * 306.41499 * 4 2 1 32 32 H 0.96987 * 120.00534 * 4.62141 * 8 6 5 33 33 H 1.09006 * 109.46925 * 304.86485 * 9 8 6 34 34 H 1.09000 * 109.47202 * 64.86067 * 9 8 6 35 35 H 0.96999 * 120.00009 * 184.99542 * 14 13 11 36 36 H 1.08997 * 117.49703 * 359.97438 * 19 10 9 37 37 H 1.08999 * 117.50466 * 145.01511 * 19 10 9 38 38 H 1.08997 * 117.49924 * 214.97576 * 20 10 9 39 39 H 1.08997 * 117.49767 * 359.97438 * 20 10 9 40 40 H 1.08994 * 109.63201 * 68.52660 * 21 5 4 41 41 H 1.09001 * 109.63211 * 189.11103 * 21 5 4 42 42 H 1.08996 * 109.49598 * 173.79104 * 22 21 5 43 43 H 1.08999 * 109.49543 * 293.84651 * 22 21 5 44 44 H 1.00906 * 111.00111 * 67.29106 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0413 -0.7235 1.2503 5 7 1.6653 -2.1422 1.1558 6 6 1.0291 -2.7584 2.1717 7 8 0.8396 -2.1680 3.2176 8 7 0.6032 -4.0290 2.0283 9 6 -0.1767 -4.6647 3.0932 10 6 -0.4277 -6.1310 2.7357 11 6 -1.0721 -6.3719 1.3949 12 1 -0.7968 -7.2380 0.8112 13 6 -2.0133 -5.4869 0.9133 14 7 -2.3058 -4.4019 1.5965 15 14 -2.8729 -5.8290 -0.7095 16 1 -3.6052 -7.1177 -0.6197 17 1 -3.8318 -4.7336 -1.0022 18 1 -1.8646 -5.9072 -1.7969 19 6 -0.7919 -7.0838 3.8760 20 6 0.5914 -7.1619 3.2251 21 6 2.0023 -2.8708 -0.0766 22 6 1.4924 -2.0628 -1.2747 23 7 2.0201 -0.6934 -1.1986 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.6773 1.9563 0.8900 28 1 3.1305 1.4420 0.0005 29 1 1.6773 1.9563 -0.8899 30 1 3.1263 -0.6352 1.3063 31 1 1.5890 -0.2831 2.1389 32 1 0.8128 -4.5225 1.2201 33 1 0.3759 -4.6088 4.0311 34 1 -1.1307 -4.1489 3.2024 35 1 -3.0184 -3.8166 1.2955 36 1 -0.8524 -6.6662 4.8809 37 1 -1.4974 -7.8852 3.6564 38 1 0.7954 -8.0146 2.5776 39 1 1.4409 -6.7954 3.8015 40 1 3.0834 -2.9890 -0.1481 41 1 1.5240 -3.8503 -0.0653 42 1 1.8292 -2.5314 -2.1993 43 1 0.4029 -2.0345 -1.2572 44 1 1.7980 -0.1727 -2.0339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334944992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:31 Heat of formation + Delta-G solvation = 10.008375 kcal Electronic energy + Delta-G solvation = -23893.645022 eV Core-core repulsion = 20654.130470 eV Total energy + Delta-G solvation = -3239.514552 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.02971 -38.04987 -36.60990 -34.12770 -32.84737 -32.30410 -32.11918 -27.53659 -27.22431 -26.74782 -25.62081 -24.29103 -22.52950 -21.22659 -19.58010 -19.27496 -18.41252 -17.67761 -16.22311 -15.68426 -15.37779 -15.21501 -14.96457 -14.73757 -14.02671 -13.90170 -13.70485 -13.33321 -13.11833 -12.74617 -12.55861 -12.17368 -11.93055 -11.78170 -11.66114 -11.53133 -11.32682 -11.11125 -11.04527 -10.90433 -10.79252 -10.69048 -10.52046 -10.25495 -9.68843 -9.23207 -8.96142 -8.84981 -8.61439 -8.29508 -8.11424 -7.57972 -6.00385 -4.21213 3.17900 3.26103 3.27648 3.32587 4.04760 4.17914 4.26324 4.69015 4.86275 4.99272 5.05259 5.13966 5.22753 5.42956 5.46838 5.50214 5.60891 5.70353 5.75985 5.87387 5.95618 5.99462 6.05493 6.07335 6.12036 6.18496 6.33852 6.45432 6.57179 6.64913 6.78092 6.87041 6.94782 7.05082 7.13307 7.27533 7.33439 7.57745 7.70502 7.83265 8.00119 8.31919 8.75352 8.99144 9.41533 9.53623 10.87414 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.006325 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.041779 B = 4425.527982 C = 5241.341946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.092 3.908 3 C -0.136 4.136 4 C 0.151 3.849 5 N -0.636 5.636 6 C 0.704 3.296 7 O -0.610 6.610 8 N -0.700 5.700 9 C 0.182 3.818 10 C 0.036 3.964 11 C -0.496 4.496 12 H 0.060 0.940 13 C 0.075 3.925 14 N -0.864 5.864 15 Si 0.890 3.110 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.198 4.198 20 C -0.212 4.212 21 C 0.118 3.882 22 C 0.038 3.962 23 N -0.676 5.676 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.394 0.606 33 H 0.019 0.981 34 H 0.109 0.891 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.307 7.397 -6.233 12.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.000 4.000 3 C -0.194 4.194 4 C 0.027 3.973 5 N -0.375 5.375 6 C 0.406 3.594 7 O -0.491 6.491 8 N -0.353 5.353 9 C 0.059 3.941 10 C 0.035 3.965 11 C -0.533 4.533 12 H 0.078 0.922 13 C -0.130 4.130 14 N -0.500 5.500 15 Si 0.718 3.282 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.236 4.236 20 C -0.249 4.249 21 C -0.006 4.006 22 C -0.092 4.092 23 N -0.308 5.308 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.230 0.770 33 H 0.037 0.963 34 H 0.127 0.873 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.629 7.791 -5.182 12.073 hybrid contribution -1.477 -0.426 -1.600 2.219 sum 6.152 7.365 -6.782 11.751 Atomic orbital electron populations 1.22445 0.96327 1.03129 1.01615 1.21357 0.93091 0.93939 0.91588 1.21767 1.01750 0.93995 1.01907 1.21387 0.99020 0.80104 0.96807 1.47180 1.63187 1.10884 1.16259 1.15865 0.78316 0.82231 0.83007 1.90807 1.64409 1.66431 1.27424 1.44977 1.56207 1.11337 1.22737 1.20939 0.95900 0.92102 0.85166 1.19245 0.95777 0.87765 0.93717 1.20472 1.23109 1.08708 1.01038 0.92222 1.24993 0.96632 0.94224 0.97108 1.69901 1.29122 1.11998 1.38985 0.86689 0.79653 0.77970 0.83898 1.20187 1.21328 1.20164 1.22933 0.97528 1.05422 0.97763 1.22942 0.92192 1.04361 1.05395 1.21620 1.00183 0.95266 0.83530 1.22358 0.98444 0.89643 0.98732 1.60574 1.62579 1.03007 1.04607 0.93327 0.91404 0.92005 0.91836 0.91715 0.92646 0.92018 0.89074 0.76981 0.96280 0.87328 0.92785 0.91455 0.90255 0.90713 0.91353 0.91457 0.89616 0.90032 0.93744 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 8.05 37.16 0.30 -2.22 16 2 C 0.09 1.18 0.96 -131.48 -0.13 1.05 16 3 C -0.14 -1.37 8.71 37.16 0.32 -1.05 16 4 C 0.15 2.33 5.25 -3.61 -0.02 2.31 16 5 N -0.64 -11.21 2.48 -178.19 -0.44 -11.66 16 6 C 0.70 15.48 8.31 -86.92 -0.72 14.76 16 7 O -0.61 -15.43 15.80 5.29 0.08 -15.35 16 8 N -0.70 -15.54 5.08 -65.22 -0.33 -15.87 16 9 C 0.18 4.43 4.62 -4.04 -0.02 4.41 16 10 C 0.04 0.85 2.06 -155.67 -0.32 0.52 16 11 C -0.50 -12.42 8.31 -34.44 -0.29 -12.71 16 12 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 13 C 0.07 1.88 5.31 -17.82 -0.09 1.78 16 14 N -0.86 -22.68 10.17 55.43 0.56 -22.12 16 15 Si 0.89 19.73 29.54 -169.99 -5.02 14.70 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 C -0.20 -4.35 9.96 -26.69 -0.27 -4.62 16 20 C -0.21 -4.46 9.93 -26.69 -0.26 -4.72 16 21 C 0.12 1.76 6.60 -3.60 -0.02 1.73 16 22 C 0.04 0.50 6.33 -3.67 -0.02 0.48 16 23 N -0.68 -8.01 6.30 -99.67 -0.63 -8.64 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.18 5.92 -51.93 -0.31 0.88 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.56 7.10 -51.93 -0.37 1.19 16 32 H 0.39 8.37 5.43 -40.82 -0.22 8.14 16 33 H 0.02 0.47 8.05 -51.93 -0.42 0.05 16 34 H 0.11 2.98 5.90 -51.93 -0.31 2.68 16 35 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 38 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.34 5.63 -51.93 -0.29 1.05 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.04 0.66 6.10 -51.93 -0.32 0.35 16 44 H 0.34 3.41 8.78 -39.29 -0.34 3.07 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -28.27 341.84 -9.36 -37.64 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -7.20 Total: 14.40 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -1.54 Total: 1.74 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.84 Total: -58.28 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.08 Total: -15.35 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.27 -9.36 -37.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334944992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.644 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds