Wall clock time and date at job start Tue Mar 31 2020 05:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.49145 * 2 1 4 4 C 1.53232 * 109.49437 * 120.05556 * 2 1 3 5 5 N 1.47075 * 108.52580 * 66.13002 * 4 2 1 6 6 C 1.34778 * 120.88445 * 231.16843 * 5 4 2 7 7 O 1.21584 * 119.99836 * 354.98518 * 6 5 4 8 8 N 1.34778 * 119.99671 * 174.99589 * 6 5 4 9 9 C 1.46504 * 119.99461 * 184.63072 * 8 6 5 10 10 C 1.52994 * 109.47103 * 184.86508 * 9 8 6 11 11 C 1.50700 * 115.54806 * 305.45856 * 10 9 8 12 12 H 1.08011 * 120.00418 * 144.65042 * 11 10 9 13 13 C 1.37874 * 120.00309 * 324.64413 * 11 10 9 14 14 N 1.31519 * 119.99764 * 2.98726 * 13 11 10 15 15 Si 1.86803 * 120.00510 * 182.98968 * 13 11 10 16 16 H 1.48498 * 109.46952 * 59.99742 * 15 13 11 17 17 H 1.48496 * 109.47251 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46950 * 299.99898 * 15 13 11 19 19 C 1.52997 * 117.50308 * 159.78961 * 10 9 8 20 20 C 1.53000 * 117.50100 * 91.12445 * 10 9 8 21 21 C 1.47083 * 118.23534 * 51.18371 * 5 4 2 22 22 C 1.53243 * 108.52091 * 308.81719 * 21 5 4 23 23 N 1.46894 * 109.49286 * 239.94987 * 2 1 3 24 24 H 1.09001 * 109.47300 * 59.99517 * 1 2 3 25 25 H 1.08997 * 109.47557 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47178 * 299.99580 * 1 2 3 27 27 H 1.09000 * 109.46855 * 60.00129 * 3 2 1 28 28 H 1.09002 * 109.47028 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47013 * 300.00252 * 3 2 1 30 30 H 1.09003 * 109.62830 * 185.84194 * 4 2 1 31 31 H 1.09003 * 109.62998 * 306.41499 * 4 2 1 32 32 H 0.96987 * 120.00534 * 4.62141 * 8 6 5 33 33 H 1.09006 * 109.46925 * 304.86485 * 9 8 6 34 34 H 1.09000 * 109.47202 * 64.86067 * 9 8 6 35 35 H 0.96999 * 120.00009 * 184.99542 * 14 13 11 36 36 H 1.08997 * 117.49703 * 359.97438 * 19 10 9 37 37 H 1.08999 * 117.50466 * 145.01511 * 19 10 9 38 38 H 1.08997 * 117.49924 * 214.97576 * 20 10 9 39 39 H 1.08997 * 117.49767 * 359.97438 * 20 10 9 40 40 H 1.08994 * 109.63201 * 68.52660 * 21 5 4 41 41 H 1.09001 * 109.63211 * 189.11103 * 21 5 4 42 42 H 1.08996 * 109.49598 * 173.79104 * 22 21 5 43 43 H 1.08999 * 109.49543 * 293.84651 * 22 21 5 44 44 H 1.00906 * 111.00111 * 67.29106 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0413 -0.7235 1.2503 5 7 1.6653 -2.1422 1.1558 6 6 1.0291 -2.7584 2.1717 7 8 0.8396 -2.1680 3.2176 8 7 0.6032 -4.0290 2.0283 9 6 -0.1767 -4.6647 3.0932 10 6 -0.4277 -6.1310 2.7357 11 6 -1.0721 -6.3719 1.3949 12 1 -0.7968 -7.2380 0.8112 13 6 -2.0133 -5.4869 0.9133 14 7 -2.3058 -4.4019 1.5965 15 14 -2.8729 -5.8290 -0.7095 16 1 -3.6052 -7.1177 -0.6197 17 1 -3.8318 -4.7336 -1.0022 18 1 -1.8646 -5.9072 -1.7969 19 6 -0.7919 -7.0838 3.8760 20 6 0.5914 -7.1619 3.2251 21 6 2.0023 -2.8708 -0.0766 22 6 1.4924 -2.0628 -1.2747 23 7 2.0201 -0.6934 -1.1986 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.6773 1.9563 0.8900 28 1 3.1305 1.4420 0.0005 29 1 1.6773 1.9563 -0.8899 30 1 3.1263 -0.6352 1.3063 31 1 1.5890 -0.2831 2.1389 32 1 0.8128 -4.5225 1.2201 33 1 0.3759 -4.6088 4.0311 34 1 -1.1307 -4.1489 3.2024 35 1 -3.0184 -3.8166 1.2955 36 1 -0.8524 -6.6662 4.8809 37 1 -1.4974 -7.8852 3.6564 38 1 0.7954 -8.0146 2.5776 39 1 1.4409 -6.7954 3.8015 40 1 3.0834 -2.9890 -0.1481 41 1 1.5240 -3.8503 -0.0653 42 1 1.8292 -2.5314 -2.1993 43 1 0.4029 -2.0345 -1.2572 44 1 1.7980 -0.1727 -2.0339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334944992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:31 Heat of formation + Delta-G solvation = -8.003507 kcal Electronic energy + Delta-G solvation = -23894.426076 eV Core-core repulsion = 20654.130470 eV Total energy + Delta-G solvation = -3240.295606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46084 -39.53100 -38.37737 -35.58427 -34.53013 -34.06389 -33.43526 -28.69673 -28.37341 -28.20386 -27.50689 -25.88237 -23.69800 -22.96443 -21.14079 -21.05388 -19.67665 -19.28643 -17.99938 -17.20317 -16.78894 -16.49722 -16.36247 -16.34621 -15.64524 -15.33269 -15.05814 -14.94325 -14.51278 -14.29127 -14.04806 -13.61277 -13.30592 -13.06273 -13.00661 -12.88475 -12.80284 -12.65423 -12.60135 -12.31020 -12.15403 -12.04216 -11.99486 -11.88852 -11.51921 -11.03379 -10.84292 -10.67918 -10.16573 -9.95973 -9.54135 -9.13326 -7.92869 -6.19375 1.41737 1.45401 1.51260 1.83135 2.36847 2.41822 2.98855 3.13589 3.29881 3.66082 3.76678 3.90961 4.04049 4.10846 4.24849 4.30091 4.36516 4.53882 4.57603 4.60409 4.75447 4.77743 4.79832 4.80880 4.83525 4.93864 4.95972 4.97885 5.06347 5.12103 5.19706 5.28718 5.37062 5.52951 5.60021 5.63561 5.95160 5.97761 5.98947 6.13506 6.38651 6.49489 6.81873 7.27864 7.45370 7.80598 8.92313 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.006325 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.041779 B = 4425.527982 C = 5241.341946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.099 3.901 3 C -0.129 4.129 4 C 0.146 3.854 5 N -0.631 5.631 6 C 0.698 3.302 7 O -0.651 6.651 8 N -0.697 5.697 9 C 0.196 3.804 10 C 0.008 3.992 11 C -0.502 4.502 12 H 0.060 0.940 13 C 0.037 3.963 14 N -0.888 5.888 15 Si 0.946 3.054 16 H -0.277 1.277 17 H -0.295 1.295 18 H -0.263 1.263 19 C -0.198 4.198 20 C -0.187 4.187 21 C 0.114 3.886 22 C 0.044 3.956 23 N -0.666 5.666 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.398 0.602 33 H 0.009 0.991 34 H 0.074 0.926 35 H 0.254 0.746 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.111 0.889 43 H 0.022 0.978 44 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.749 7.527 -8.396 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.007 3.993 3 C -0.187 4.187 4 C 0.022 3.978 5 N -0.368 5.368 6 C 0.399 3.601 7 O -0.535 6.535 8 N -0.350 5.350 9 C 0.071 3.929 10 C 0.007 3.993 11 C -0.540 4.540 12 H 0.078 0.922 13 C -0.165 4.165 14 N -0.525 5.525 15 Si 0.772 3.228 16 H -0.202 1.202 17 H -0.221 1.221 18 H -0.187 1.187 19 C -0.236 4.236 20 C -0.224 4.224 21 C -0.010 4.010 22 C -0.086 4.086 23 N -0.298 5.298 24 H 0.088 0.912 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.236 0.764 33 H 0.028 0.972 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.129 0.871 43 H 0.040 0.960 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.105 7.919 -7.404 14.158 hybrid contribution -1.901 -0.469 -0.902 2.156 sum 7.204 7.450 -8.306 13.281 Atomic orbital electron populations 1.22401 0.97724 1.00801 1.02031 1.21288 0.91797 0.95425 0.90772 1.21723 1.02323 0.91735 1.02924 1.21587 0.99786 0.78888 0.97537 1.47233 1.61818 1.11797 1.15990 1.16083 0.78527 0.82047 0.83450 1.90763 1.66102 1.67225 1.29439 1.44825 1.56049 1.11624 1.22469 1.20586 0.94238 0.92545 0.85511 1.19288 0.98170 0.87789 0.94057 1.20645 1.23161 1.08556 1.01594 0.92210 1.25580 0.97227 0.93996 0.99648 1.70093 1.29334 1.12734 1.40299 0.85802 0.78702 0.77199 0.81065 1.20233 1.22131 1.18748 1.22957 0.98424 1.04697 0.97558 1.22927 0.91851 1.03159 1.04435 1.21838 1.01352 0.94865 0.82898 1.22305 0.97096 0.90353 0.98885 1.60544 1.61864 1.02523 1.04894 0.91164 0.95030 0.93304 0.91802 0.90699 0.90734 0.90436 0.91450 0.76434 0.97237 0.90852 0.93591 0.90810 0.90196 0.89553 0.90201 0.89345 0.90763 0.87128 0.95965 0.82553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.81 8.05 71.98 0.58 -4.23 16 2 C 0.10 2.37 0.96 3.61 0.00 2.37 16 3 C -0.13 -2.24 8.71 71.98 0.63 -1.61 16 4 C 0.15 4.43 5.25 86.35 0.45 4.88 16 5 N -0.63 -22.29 2.48 -835.94 -2.07 -24.37 16 6 C 0.70 31.61 8.31 179.05 1.49 33.10 16 7 O -0.65 -34.43 15.80 -3.98 -0.06 -34.49 16 8 N -0.70 -31.74 5.08 -478.53 -2.43 -34.17 16 9 C 0.20 9.80 4.62 86.38 0.40 10.20 16 10 C 0.01 0.36 2.06 -52.93 -0.11 0.26 16 11 C -0.50 -25.05 8.31 25.60 0.21 -24.83 16 12 H 0.06 2.93 7.82 -2.91 -0.02 2.91 16 13 C 0.04 1.88 5.31 84.65 0.45 2.33 16 14 N -0.89 -47.94 10.17 21.45 0.22 -47.73 16 15 Si 0.95 40.41 29.54 68.60 2.03 42.44 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.30 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 19 C -0.20 -8.58 9.96 30.62 0.30 -8.28 16 20 C -0.19 -7.59 9.93 30.62 0.30 -7.28 16 21 C 0.11 3.23 6.60 86.35 0.57 3.80 16 22 C 0.04 1.05 6.33 86.37 0.55 1.59 16 23 N -0.67 -13.82 6.30 -469.25 -2.96 -16.78 16 24 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 25 H 0.03 1.11 5.92 -2.39 -0.01 1.10 16 26 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 31 H 0.07 2.38 7.10 -2.39 -0.02 2.36 16 32 H 0.40 17.15 5.43 -92.72 -0.50 16.65 16 33 H 0.01 0.48 8.05 -2.38 -0.02 0.46 16 34 H 0.07 4.23 5.90 -2.39 -0.01 4.22 16 35 H 0.25 13.64 8.32 -92.71 -0.77 12.87 16 36 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 38 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 2.29 5.63 -2.39 -0.01 2.27 16 42 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.02 0.64 6.10 -2.39 -0.01 0.63 16 44 H 0.35 5.80 8.78 -89.69 -0.79 5.01 16 Total: -1.00 -62.31 341.84 0.26 -62.05 By element: Atomic # 1 Polarization: 41.05 SS G_CDS: -0.29 Total: 40.76 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 5.83 Total: 12.28 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -7.24 Total: -123.04 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.06 Total: -34.49 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -62.31 0.26 -62.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334944992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.044 kcal (2) G-P(sol) polarization free energy of solvation -62.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds