Wall clock time and date at job start Tue Mar 31 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46343 * 110.99797 * 2 1 4 4 C 1.53784 * 111.84193 * 181.60486 * 3 2 1 5 5 C 1.51969 * 106.99170 * 302.99770 * 4 3 2 6 6 H 1.09001 * 111.08890 * 301.27651 * 5 4 3 7 7 C 1.53581 * 115.61302 * 172.52174 * 5 4 3 8 8 C 1.55361 * 101.61476 * 206.70045 * 7 5 4 9 9 N 1.48297 * 107.03513 * 22.87719 * 8 7 5 10 10 C 1.34777 * 126.50234 * 185.26780 * 9 8 7 11 11 O 1.21593 * 119.99923 * 179.68207 * 10 9 8 12 12 N 1.34777 * 120.00128 * 359.68337 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27942 * 12 10 9 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 C 1.50697 * 109.47491 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99965 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00490 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00172 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99620 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46847 * 90.00413 * 19 17 15 21 21 H 1.48502 * 109.46888 * 210.00098 * 19 17 15 22 22 H 1.48496 * 109.47530 * 329.99981 * 19 17 15 23 23 C 1.45204 * 106.99303 * 4.99816 * 9 8 7 24 24 H 1.08996 * 109.07434 * 84.40134 * 23 9 8 25 25 C 1.47733 * 111.00028 * 127.22547 * 2 1 3 26 26 H 1.09001 * 109.47426 * 292.76821 * 1 2 3 27 27 H 1.08994 * 109.47273 * 52.77226 * 1 2 3 28 28 H 1.09011 * 109.46742 * 172.77139 * 1 2 3 29 29 H 1.09007 * 109.00419 * 302.20327 * 3 2 1 30 30 H 1.08992 * 109.01442 * 60.99422 * 3 2 1 31 31 H 1.08994 * 109.95059 * 62.36820 * 4 3 2 32 32 H 1.08998 * 109.95030 * 183.54631 * 4 3 2 33 33 H 1.08997 * 110.97986 * 324.99967 * 7 5 4 34 34 H 1.09000 * 110.97950 * 88.75288 * 7 5 4 35 35 H 1.08992 * 110.01613 * 263.46724 * 8 7 5 36 36 H 1.09006 * 109.80566 * 142.16355 * 8 7 5 37 37 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 38 38 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 39 39 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 40 40 H 1.09004 * 109.47066 * 299.99732 * 14 13 12 41 41 H 1.09000 * 109.47665 * 59.99541 * 14 13 12 42 42 H 0.96998 * 120.00373 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.90850 * 56.28427 * 25 2 1 44 44 H 1.08994 * 109.98022 * 295.16274 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9934 1.3663 0.0000 4 6 3.5305 1.3891 -0.0400 5 6 4.0179 0.5921 1.1587 6 1 3.6452 1.0177 2.0904 7 6 5.5310 0.3351 1.2144 8 6 5.5948 -0.9793 2.0401 9 7 4.2770 -1.6448 1.9001 10 6 3.8715 -2.7621 2.5355 11 8 2.7568 -3.2046 2.3355 12 7 4.7016 -3.3888 3.3926 13 6 4.2630 -4.6068 4.0785 14 6 5.3880 -5.1168 4.9813 15 6 4.9367 -6.3693 5.6875 16 1 3.9463 -6.7620 5.5104 17 6 5.7881 -7.0139 6.5596 18 7 5.3944 -8.1072 7.1754 19 14 7.5013 -6.3351 6.8654 20 1 7.4599 -5.3809 8.0024 21 1 8.4254 -7.4514 7.1894 22 1 7.9805 -5.6335 5.6475 23 6 3.5040 -0.8605 0.9536 24 1 3.7596 -1.1716 -0.0593 25 6 1.9984 -0.8344 1.0982 26 1 -0.3634 0.3977 0.9476 27 1 -0.3633 0.6217 -0.8182 28 1 -0.3633 -1.0196 -0.1293 29 1 1.6078 1.8945 -0.8721 30 1 1.6541 1.8768 0.9012 31 1 3.8855 0.9287 -0.9619 32 1 3.8890 2.4164 0.0244 33 1 5.9396 0.1923 0.2140 34 1 6.0455 1.1447 1.7320 35 1 5.7869 -0.7522 3.0887 36 1 6.3805 -1.6247 1.6470 37 1 5.5910 -3.0360 3.5519 38 1 3.3834 -4.3864 4.6834 39 1 4.0148 -5.3699 3.3410 40 1 6.2676 -5.3372 4.3765 41 1 5.6363 -4.3537 5.7190 42 1 5.9931 -8.5605 7.7893 43 1 1.6003 -1.8461 1.0207 44 1 1.7253 -0.4009 2.0602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334947771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:18 Heat of formation + Delta-G solvation = -22.438762 kcal Electronic energy + Delta-G solvation = -22663.388685 eV Core-core repulsion = 19422.467119 eV Total energy + Delta-G solvation = -3240.921565 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.82673 -38.77357 -36.66567 -34.93045 -33.20409 -32.70012 -30.65439 -30.45106 -29.20687 -26.29333 -25.04558 -23.33055 -23.03371 -21.70245 -20.78884 -20.38219 -19.51975 -17.53532 -16.88714 -16.32303 -15.76128 -15.41260 -15.10801 -14.82927 -14.66695 -14.23624 -14.16269 -13.89803 -13.56279 -13.28028 -12.90235 -12.84699 -12.61093 -12.58067 -12.20585 -11.97156 -11.69065 -11.49580 -11.43377 -11.18803 -11.02214 -10.90479 -10.46461 -10.36965 -10.18260 -9.94836 -9.60574 -9.30182 -8.74805 -8.60609 -8.47824 -8.26367 -6.09732 -4.09598 2.74268 3.25810 3.33355 3.34838 3.49867 3.73357 4.02750 4.27864 4.38775 4.44716 4.51978 4.77960 4.90268 4.96975 5.07513 5.14780 5.23206 5.24862 5.25979 5.33608 5.43600 5.46342 5.52481 5.60520 5.68158 5.71440 5.74559 5.87508 5.94021 6.09973 6.12699 6.26944 6.36164 6.60219 6.81870 6.85867 6.92327 7.16475 7.26553 7.36944 7.69041 8.26732 8.46910 8.92605 8.95965 9.50449 11.03395 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030878 B = 0.003447 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.574213 B = 8121.920012 C = 8907.829911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.554 5.554 3 C 0.058 3.942 4 C -0.104 4.104 5 C -0.114 4.114 6 H 0.082 0.918 7 C -0.120 4.120 8 C 0.101 3.899 9 N -0.635 5.635 10 C 0.719 3.281 11 O -0.588 6.588 12 N -0.740 5.740 13 C 0.148 3.852 14 C -0.021 4.021 15 C -0.521 4.521 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.899 5.899 19 Si 0.882 3.118 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.157 3.843 24 H 0.073 0.927 25 C 0.063 3.937 26 H 0.024 0.976 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.391 0.609 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.021 0.979 41 H 0.016 0.984 42 H 0.265 0.735 43 H 0.102 0.898 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.068 22.979 -14.995 27.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.279 5.279 3 C -0.070 4.070 4 C -0.142 4.142 5 C -0.134 4.134 6 H 0.100 0.900 7 C -0.157 4.157 8 C -0.022 4.022 9 N -0.375 5.375 10 C 0.421 3.579 11 O -0.467 6.467 12 N -0.393 5.393 13 C 0.026 3.974 14 C -0.059 4.059 15 C -0.560 4.560 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.709 3.291 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.191 1.191 23 C 0.052 3.948 24 H 0.091 0.909 25 C -0.064 4.064 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.224 0.776 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.121 0.879 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.729 22.155 -15.353 27.010 hybrid contribution 1.143 0.769 1.222 1.841 sum -0.586 22.924 -14.131 26.936 Atomic orbital electron populations 1.22264 0.86482 1.02704 1.00093 1.61162 1.07853 1.12535 1.46388 1.22037 0.95217 0.89179 1.00568 1.21484 0.94551 1.00172 0.97975 1.22376 0.95610 0.95950 0.99428 0.89959 1.22454 0.96005 0.96419 1.00868 1.22397 0.85451 0.93893 1.00453 1.47265 1.16086 1.26551 1.47560 1.15563 0.84417 0.78994 0.78948 1.90874 1.20028 1.67222 1.68530 1.45535 1.17444 1.30000 1.46335 1.21380 0.98684 0.82818 0.94538 1.19790 0.94299 0.97146 0.94657 1.20920 1.02627 1.07687 1.24755 0.90570 1.24997 0.98389 0.94634 0.95273 1.69901 1.36720 1.18284 1.28825 0.86748 0.84594 0.78784 0.78928 1.20259 1.21279 1.19093 1.20980 0.92157 0.89097 0.92595 0.90919 1.21998 0.93850 0.99296 0.91297 0.95731 0.91481 0.90997 0.90699 0.95345 0.90520 0.90755 0.90174 0.90033 0.91331 0.91260 0.77631 0.92179 0.92094 0.96055 0.96537 0.92561 0.87930 0.94641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.63 60.06 0.58 0.88 16 2 N -0.55 -5.99 4.80 -243.25 -1.17 -7.15 16 3 C 0.06 0.49 5.41 -3.72 -0.02 0.47 16 4 C -0.10 -0.76 5.76 -26.85 -0.15 -0.91 16 5 C -0.11 -1.01 2.70 -89.55 -0.24 -1.25 16 6 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 7 C -0.12 -0.88 6.57 -25.18 -0.17 -1.05 16 8 C 0.10 0.99 6.31 -1.80 -0.01 0.98 16 9 N -0.63 -8.76 3.28 -169.34 -0.56 -9.32 16 10 C 0.72 12.89 8.44 -86.92 -0.73 12.16 16 11 O -0.59 -12.58 14.56 5.28 0.08 -12.51 16 12 N -0.74 -13.06 5.52 -65.23 -0.36 -13.42 16 13 C 0.15 3.14 5.61 -4.04 -0.02 3.12 16 14 C -0.02 -0.49 4.16 -27.89 -0.12 -0.61 16 15 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 16 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 19 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 23 C 0.16 1.93 2.59 -68.20 -0.18 1.75 16 24 H 0.07 0.93 7.91 -51.93 -0.41 0.52 16 25 C 0.06 0.84 4.62 -4.24 -0.02 0.82 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.50 8.07 -51.93 -0.42 0.09 16 28 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.57 7.99 -51.93 -0.41 0.16 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.53 8.13 -51.93 -0.42 0.10 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.39 5.88 7.50 -40.82 -0.31 5.57 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 41 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.10 1.66 6.62 -51.93 -0.34 1.32 16 44 H 0.04 0.50 8.13 -51.93 -0.42 0.08 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -32.83 342.14 -10.00 -42.83 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.74 Total: 1.54 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -1.51 Total: 3.15 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -1.31 Total: -56.66 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.83 -10.00 -42.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334947771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.392 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds