Wall clock time and date at job start Tue Mar 31 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46357 * 110.99913 * 2 1 4 4 C 1.53787 * 111.83479 * 178.39202 * 3 2 1 5 5 C 1.51968 * 106.99707 * 57.00166 * 4 3 2 6 6 H 1.08998 * 111.08347 * 59.58681 * 5 4 3 7 7 C 1.53573 * 115.61562 * 187.47549 * 5 4 3 8 8 C 1.55407 * 101.69956 * 153.11492 * 7 5 4 9 9 N 1.48306 * 107.00963 * 337.45190 * 8 7 5 10 10 C 1.34769 * 126.50442 * 174.60841 * 9 8 7 11 11 O 1.21588 * 119.99975 * 180.02562 * 10 9 8 12 12 N 1.34784 * 120.00175 * 0.03502 * 10 9 8 13 13 C 1.46499 * 119.99897 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47073 * 179.97438 * 13 12 10 15 15 C 1.50694 * 109.47168 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.45199 * 106.98869 * 354.87838 * 9 8 7 24 24 H 1.08998 * 109.07624 * 274.69059 * 23 9 8 25 25 C 1.47724 * 111.00098 * 232.77155 * 2 1 3 26 26 H 1.08998 * 109.46930 * 63.95411 * 1 2 3 27 27 H 1.08994 * 109.46899 * 183.95603 * 1 2 3 28 28 H 1.09002 * 109.46983 * 303.95762 * 1 2 3 29 29 H 1.08994 * 109.00584 * 57.79040 * 3 2 1 30 30 H 1.08995 * 109.00842 * 298.99996 * 3 2 1 31 31 H 1.08998 * 109.94711 * 297.63212 * 4 3 2 32 32 H 1.08994 * 110.01502 * 176.40804 * 4 3 2 33 33 H 1.09000 * 110.97853 * 35.01274 * 7 5 4 34 34 H 1.08993 * 110.97833 * 271.21549 * 7 5 4 35 35 H 1.09000 * 109.92147 * 218.11642 * 8 7 5 36 36 H 1.09001 * 109.92899 * 96.79284 * 8 7 5 37 37 H 0.96991 * 119.99637 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.47239 * 59.99631 * 13 12 10 39 39 H 1.08998 * 109.47134 * 299.99061 * 13 12 10 40 40 H 1.09007 * 109.46922 * 59.99533 * 14 13 12 41 41 H 1.09003 * 109.46836 * 300.00289 * 14 13 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.91374 * 303.71997 * 25 2 1 44 44 H 1.08999 * 109.91269 * 64.80129 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9935 1.3664 0.0000 4 6 3.5307 1.3890 0.0401 5 6 4.0181 0.5919 -1.1585 6 1 3.6581 1.0265 -2.0910 7 6 5.5311 0.3348 -1.2141 8 6 5.5970 -0.9826 -2.0357 9 7 4.2769 -1.6449 -1.9001 10 6 3.8714 -2.7620 -2.5356 11 8 2.7568 -3.2047 -2.3354 12 7 4.7014 -3.3887 -3.3930 13 6 4.2607 -4.6033 -4.0833 14 6 5.3834 -5.1098 -4.9911 15 6 4.9303 -6.3596 -5.7008 16 1 3.9405 -6.7532 -5.5225 17 6 5.7795 -7.0007 -6.5777 18 7 6.9846 -6.5212 -6.7952 19 14 5.2181 -8.5503 -7.4568 20 1 5.5686 -9.7386 -6.6380 21 1 3.7471 -8.5019 -7.6547 22 1 5.8924 -8.6424 -8.7768 23 6 3.5021 -0.8576 -0.9578 24 1 3.7410 -1.1790 0.0560 25 6 1.9984 -0.8344 -1.0981 26 1 -0.3633 0.4512 -0.9233 27 1 -0.3633 -1.0252 0.0709 28 1 -0.3633 0.5740 0.8524 29 1 1.6079 1.8946 0.8719 30 1 1.6543 1.8768 -0.9013 31 1 3.8855 0.9285 0.9621 32 1 3.8905 2.4158 -0.0250 33 1 5.9397 0.1918 -0.2137 34 1 6.0456 1.1440 -1.7322 35 1 6.3795 -1.6292 -1.6386 36 1 5.7937 -0.7574 -3.0839 37 1 5.5905 -3.0354 -3.5528 38 1 3.3799 -4.3799 -4.6853 39 1 4.0138 -5.3696 -3.3485 40 1 6.2644 -5.3331 -4.3894 41 1 5.6300 -4.3433 -5.7259 42 1 7.5821 -6.9725 -7.4119 43 1 1.6004 -1.8461 -1.0207 44 1 1.7242 -0.4003 -2.0596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334947772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:20 Heat of formation + Delta-G solvation = -26.809408 kcal Electronic energy + Delta-G solvation = -22602.182840 eV Core-core repulsion = 19361.071750 eV Total energy + Delta-G solvation = -3241.111091 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.76914 -38.69845 -36.60723 -34.79638 -33.16182 -32.72821 -30.56054 -30.25313 -28.86980 -26.25544 -24.89329 -23.30086 -23.05230 -21.65770 -20.94841 -20.31164 -19.46931 -17.49079 -16.46693 -16.18216 -15.68467 -15.36034 -15.06550 -14.75677 -14.58642 -14.49572 -14.09088 -13.83466 -13.41294 -13.14771 -12.86193 -12.76532 -12.54052 -12.27970 -12.14224 -11.89522 -11.64672 -11.42117 -11.16345 -11.01748 -10.95718 -10.85149 -10.61401 -10.42146 -10.29438 -9.75495 -9.49795 -9.22771 -8.67318 -8.45718 -8.42648 -8.14309 -6.07805 -4.10254 2.82240 3.30821 3.36786 3.41385 3.58107 3.77299 4.09622 4.34060 4.40921 4.53925 4.59689 4.83187 4.95839 5.02515 5.11739 5.19681 5.28128 5.29335 5.31254 5.37421 5.50363 5.51762 5.57893 5.65838 5.71589 5.74356 5.79262 5.93550 6.01126 6.15982 6.26440 6.42346 6.48774 6.79408 6.86995 6.95164 7.05206 7.39690 7.58737 7.65221 7.91534 8.27501 8.41581 8.94669 9.03589 9.54352 11.03928 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032218 B = 0.003219 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.882850 B = 8697.095212 C = 9448.207767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.554 5.554 3 C 0.058 3.942 4 C -0.104 4.104 5 C -0.113 4.113 6 H 0.082 0.918 7 C -0.120 4.120 8 C 0.101 3.899 9 N -0.635 5.635 10 C 0.718 3.282 11 O -0.592 6.592 12 N -0.736 5.736 13 C 0.140 3.860 14 C 0.013 3.987 15 C -0.520 4.520 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.272 1.272 22 H -0.286 1.286 23 C 0.158 3.842 24 H 0.072 0.928 25 C 0.062 3.938 26 H 0.024 0.976 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.392 0.608 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.262 0.738 43 H 0.102 0.898 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.621 19.127 13.898 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.279 5.279 3 C -0.070 4.070 4 C -0.142 4.142 5 C -0.132 4.132 6 H 0.100 0.900 7 C -0.158 4.158 8 C -0.022 4.022 9 N -0.375 5.375 10 C 0.420 3.580 11 O -0.471 6.471 12 N -0.389 5.389 13 C 0.018 3.982 14 C -0.024 4.024 15 C -0.559 4.559 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.197 1.197 22 H -0.212 1.212 23 C 0.052 3.948 24 H 0.090 0.910 25 C -0.065 4.065 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.226 0.774 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.121 0.879 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.172 18.418 14.278 23.871 hybrid contribution 0.050 -0.297 -1.457 1.488 sum -5.122 18.121 12.821 22.781 Atomic orbital electron populations 1.22259 0.86536 1.02582 1.00145 1.61160 1.07803 1.12553 1.46422 1.22032 0.95241 0.89151 1.00545 1.21484 0.94510 1.00174 0.98002 1.22290 0.95688 0.95840 0.99399 0.89974 1.22471 0.95972 0.96462 1.00890 1.22410 0.85379 0.93845 1.00546 1.47258 1.15847 1.26548 1.47803 1.15598 0.84431 0.78979 0.79002 1.90854 1.20165 1.67329 1.68764 1.45545 1.17448 1.30051 1.45884 1.21597 0.99352 0.82806 0.94493 1.19319 0.92851 0.96416 0.93819 1.21057 1.00605 1.09416 1.24805 0.92209 1.24999 0.94872 0.97772 0.96673 1.69959 1.07048 1.40089 1.36286 0.86508 0.78932 0.83179 0.78914 1.20556 1.19711 1.21196 1.20838 0.92130 0.89096 0.92732 0.91028 1.21968 0.94017 0.99235 0.91277 0.95785 0.91037 0.91474 0.90726 0.95346 0.90527 0.90753 0.90246 0.90013 0.91180 0.91278 0.77436 0.92818 0.92745 0.95999 0.96032 0.92878 0.87945 0.94755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.61 60.07 0.58 0.89 16 2 N -0.55 -6.15 4.81 -243.39 -1.17 -7.32 16 3 C 0.06 0.51 5.41 -3.71 -0.02 0.49 16 4 C -0.10 -0.79 5.76 -26.85 -0.15 -0.95 16 5 C -0.11 -1.06 2.70 -89.70 -0.24 -1.30 16 6 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 7 C -0.12 -0.96 6.57 -25.16 -0.17 -1.12 16 8 C 0.10 1.08 6.32 -1.77 -0.01 1.07 16 9 N -0.63 -9.21 3.28 -169.62 -0.56 -9.77 16 10 C 0.72 13.43 8.44 -86.92 -0.73 12.69 16 11 O -0.59 -13.00 14.56 5.29 0.08 -12.93 16 12 N -0.74 -13.80 5.52 -65.23 -0.36 -14.16 16 13 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 14 C 0.01 0.34 5.09 -27.89 -0.14 0.20 16 15 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 16 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 19 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.16 2.02 2.55 -68.47 -0.17 1.84 16 24 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 25 C 0.06 0.85 4.62 -4.36 -0.02 0.83 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 29 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 30 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.60 8.01 -51.93 -0.42 0.18 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.39 6.50 7.49 -40.82 -0.31 6.19 16 38 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.10 1.70 6.62 -51.93 -0.34 1.35 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -32.11 345.83 -10.38 -42.49 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.78 Total: 1.17 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -1.52 Total: 4.35 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -1.35 Total: -56.84 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.11 -10.38 -42.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334947772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.682 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds