Wall clock time and date at job start Tue Mar 31 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.45209 * 111.16148 * 2 1 4 4 C 1.51595 * 111.65259 * 184.72441 * 3 2 1 5 5 C 1.50021 * 114.73552 * 314.63686 * 4 3 2 6 6 H 1.08997 * 108.51129 * 157.96373 * 5 4 3 7 7 C 1.54004 * 112.37169 * 277.72183 * 5 4 3 8 8 C 1.54126 * 103.56715 * 155.94183 * 7 5 4 9 9 N 1.46934 * 107.69024 * 342.91100 * 8 7 5 10 10 C 1.34770 * 125.63681 * 176.64809 * 9 8 7 11 11 O 1.21588 * 120.00598 * 179.97438 * 10 9 8 12 12 N 1.34781 * 120.00145 * 359.97438 * 10 9 8 13 13 C 1.46499 * 120.00277 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47073 * 180.02562 * 13 12 10 15 15 C 1.50698 * 109.46879 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00128 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99774 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99833 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00251 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47102 * 89.99873 * 19 17 15 21 21 H 1.48497 * 109.47544 * 210.00474 * 19 17 15 22 22 H 1.48505 * 109.46977 * 330.00405 * 19 17 15 23 23 C 1.47153 * 108.40486 * 356.05332 * 9 8 7 24 24 H 1.08999 * 110.04045 * 143.15429 * 23 9 8 25 25 C 1.46711 * 111.00205 * 123.37699 * 2 1 3 26 26 H 1.08997 * 109.47175 * 296.61701 * 1 2 3 27 27 H 1.09000 * 109.47025 * 56.62089 * 1 2 3 28 28 H 1.09002 * 109.46822 * 176.61515 * 1 2 3 29 29 H 1.09004 * 108.13101 * 64.59506 * 3 2 1 30 30 H 1.08996 * 109.50842 * 305.76844 * 3 2 1 31 31 H 1.09002 * 108.40541 * 193.32490 * 4 3 2 32 32 H 1.08998 * 108.40139 * 75.94078 * 4 3 2 33 33 H 1.09006 * 110.60235 * 274.46049 * 7 5 4 34 34 H 1.08996 * 110.61019 * 37.41978 * 7 5 4 35 35 H 1.09001 * 109.81516 * 102.45305 * 8 7 5 36 36 H 1.08999 * 109.81498 * 223.30112 * 8 7 5 37 37 H 0.97002 * 119.99794 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.47237 * 300.00283 * 13 12 10 39 39 H 1.08994 * 109.47047 * 60.00090 * 13 12 10 40 40 H 1.09001 * 109.47016 * 300.00046 * 14 13 12 41 41 H 1.08994 * 109.47415 * 59.99943 * 14 13 12 42 42 H 0.96995 * 119.99928 * 179.97438 * 18 17 15 43 43 H 1.09005 * 109.43894 * 49.84334 * 25 2 1 44 44 H 1.08997 * 109.41724 * 289.93867 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9932 1.3542 0.0000 4 6 3.5046 1.3689 -0.1160 5 6 4.2121 0.3893 0.7731 6 1 5.1999 0.1941 0.3559 7 6 4.3887 0.9211 2.2075 8 6 4.5263 -0.3597 3.0536 9 7 4.0293 -1.4830 2.2473 10 6 4.0430 -2.7797 2.6144 11 8 3.6029 -3.6289 1.8637 12 7 4.5446 -3.1354 3.8138 13 6 4.5590 -4.5448 4.2130 14 6 5.1752 -4.6736 5.6075 15 6 5.1905 -6.1235 6.0180 16 1 4.7995 -6.8776 5.3511 17 6 5.7038 -6.4872 7.2449 18 7 5.7167 -7.7526 7.6033 19 14 6.3807 -5.1829 8.3981 20 1 5.2922 -4.6874 9.2784 21 1 7.4616 -5.7703 9.2299 22 1 6.9265 -4.0539 7.6025 23 6 3.5030 -0.9490 0.9811 24 1 3.7294 -1.6340 0.1640 25 6 1.9948 -0.7535 1.1437 26 1 -0.3633 0.4604 0.9187 27 1 -0.3633 0.5654 -0.8582 28 1 -0.3633 -1.0259 -0.0607 29 1 1.7012 1.8309 0.9357 30 1 1.5646 1.9104 -0.8336 31 1 3.8586 2.3711 0.1257 32 1 3.7725 1.1509 -1.1499 33 1 5.2902 1.5293 2.2828 34 1 3.5128 1.4921 2.5156 35 1 5.5733 -0.5231 3.3091 36 1 3.9341 -0.2666 3.9640 37 1 4.8954 -2.4579 4.4129 38 1 3.5387 -4.9280 4.2302 39 1 5.1506 -5.1185 3.4997 40 1 6.1954 -4.2902 5.5908 41 1 4.5832 -4.1000 6.3207 42 1 6.0781 -8.0085 8.4663 43 1 1.5060 -1.7266 1.1927 44 1 1.7974 -0.2018 2.0628 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334947773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:22 Heat of formation + Delta-G solvation = -26.280841 kcal Electronic energy + Delta-G solvation = -22681.386632 eV Core-core repulsion = 19440.298461 eV Total energy + Delta-G solvation = -3241.088170 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.92066 -38.90081 -36.65361 -34.91942 -33.48126 -32.72884 -30.65470 -30.34293 -29.23442 -26.83101 -25.02321 -23.57200 -23.07602 -22.39442 -20.77429 -19.71395 -18.96697 -17.77476 -16.86339 -16.65921 -15.93657 -15.56181 -15.21247 -14.86903 -14.67059 -14.19049 -14.15569 -14.03916 -13.49483 -13.15365 -13.06566 -12.81395 -12.59573 -12.57878 -12.35524 -12.03669 -11.83832 -11.73661 -11.45353 -11.19055 -10.88547 -10.71255 -10.53402 -10.37435 -10.23494 -9.96319 -9.73224 -9.30948 -8.77915 -8.61304 -8.56565 -8.28647 -6.09741 -4.09579 2.74866 3.25638 3.33144 3.34605 3.47376 3.74886 4.09279 4.30645 4.38669 4.42234 4.50024 4.76046 4.80019 4.87645 5.04724 5.09688 5.17253 5.20450 5.23128 5.31516 5.37470 5.43153 5.49288 5.57596 5.63135 5.67472 5.70451 5.87967 5.95849 6.05995 6.08266 6.26905 6.33052 6.60214 6.77768 6.83587 6.84759 7.13467 7.26366 7.34443 7.68935 8.26924 8.47002 8.91687 8.95782 9.50401 11.03393 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031722 B = 0.003369 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.459944 B = 8309.902575 C = 8753.837254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.540 5.540 3 C 0.058 3.942 4 C -0.100 4.100 5 C -0.093 4.093 6 H 0.079 0.921 7 C -0.125 4.125 8 C 0.097 3.903 9 N -0.639 5.639 10 C 0.719 3.281 11 O -0.588 6.588 12 N -0.740 5.740 13 C 0.148 3.852 14 C -0.021 4.021 15 C -0.521 4.521 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.899 5.899 19 Si 0.882 3.118 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.172 3.828 24 H 0.094 0.906 25 C 0.049 3.951 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.391 0.609 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.021 0.979 41 H 0.016 0.984 42 H 0.264 0.736 43 H 0.081 0.919 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 24.218 -13.323 28.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.264 5.264 3 C -0.070 4.070 4 C -0.138 4.138 5 C -0.112 4.112 6 H 0.097 0.903 7 C -0.163 4.163 8 C -0.026 4.026 9 N -0.378 5.378 10 C 0.420 3.580 11 O -0.466 6.466 12 N -0.393 5.393 13 C 0.026 3.974 14 C -0.059 4.059 15 C -0.560 4.560 16 H 0.095 0.905 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.710 3.290 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.191 1.191 23 C 0.067 3.933 24 H 0.112 0.888 25 C -0.080 4.080 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.224 0.776 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.410 23.073 -14.109 27.581 hybrid contribution 0.287 1.304 1.923 2.342 sum -5.123 24.378 -12.186 27.731 Atomic orbital electron populations 1.22354 0.86738 1.02626 1.00331 1.61328 1.07874 1.14053 1.43141 1.21495 0.95368 0.89678 1.00446 1.20514 0.94212 0.98770 1.00315 1.21045 1.00210 0.94481 0.95490 0.90257 1.22491 1.02723 0.96479 0.94610 1.21901 0.99514 0.86408 0.94805 1.47623 1.65984 1.04553 1.19676 1.15529 0.79228 0.80654 0.82546 1.90917 1.53747 1.48491 1.53430 1.45544 1.65735 1.11091 1.16959 1.21388 1.01200 0.77404 0.97455 1.19790 0.95879 0.98825 0.91392 1.20923 1.41297 0.90834 1.02922 0.90550 1.25001 0.95249 0.95278 0.97775 1.69907 1.46157 1.15900 1.21760 0.86748 0.79058 0.82229 0.81008 1.20257 1.21277 1.19115 1.20961 0.91650 0.94128 0.86585 0.88794 1.22434 0.95718 0.98903 0.90922 0.95721 0.91302 0.91027 0.95581 0.90518 0.90966 0.91101 0.89959 0.90873 0.91453 0.91846 0.77620 0.92150 0.92080 0.96063 0.96529 0.92565 0.90023 0.94585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.56 60.06 0.57 0.81 16 2 N -0.54 -5.39 4.92 -245.44 -1.21 -6.59 16 3 C 0.06 0.45 5.37 -5.45 -0.03 0.42 16 4 C -0.10 -0.69 5.43 -28.92 -0.16 -0.85 16 5 C -0.09 -0.80 2.79 -91.64 -0.26 -1.06 16 6 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 7 C -0.13 -0.94 6.07 -25.62 -0.16 -1.09 16 8 C 0.10 0.97 6.15 -3.22 -0.02 0.95 16 9 N -0.64 -8.73 2.85 -170.37 -0.49 -9.22 16 10 C 0.72 12.96 8.49 -86.92 -0.74 12.22 16 11 O -0.59 -12.94 16.61 5.29 0.09 -12.85 16 12 N -0.74 -13.09 5.52 -65.23 -0.36 -13.45 16 13 C 0.15 3.15 5.61 -4.04 -0.02 3.13 16 14 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 15 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 16 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 17 C 0.07 1.98 5.47 -17.81 -0.10 1.89 16 18 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 19 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 23 C 0.17 2.08 3.07 -67.66 -0.21 1.87 16 24 H 0.09 1.34 8.04 -51.93 -0.42 0.93 16 25 C 0.05 0.58 4.88 -3.95 -0.02 0.56 16 26 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 29 H 0.03 0.20 8.06 -51.93 -0.42 -0.22 16 30 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.07 0.38 7.99 -51.93 -0.41 -0.04 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 35 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.39 5.89 7.43 -40.82 -0.30 5.59 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 41 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 44 H 0.04 0.42 7.90 -51.93 -0.41 0.01 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -33.15 344.78 -10.04 -43.19 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.80 Total: 0.89 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -1.58 Total: 3.13 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -1.28 Total: -56.05 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.15 -10.04 -43.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334947773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.908 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds