Wall clock time and date at job start Tue Mar 31 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47071 * 111.00252 * 2 1 4 4 C 1.52767 * 108.79797 * 187.91638 * 3 2 1 5 5 C 1.53081 * 110.30238 * 299.03899 * 4 3 2 6 6 H 1.09001 * 112.58502 * 285.90127 * 5 4 3 7 7 C 1.55949 * 106.85301 * 161.35205 * 5 4 3 8 8 C 1.54564 * 102.40333 * 282.72513 * 7 5 4 9 9 N 1.47516 * 106.99357 * 336.16228 * 8 7 5 10 10 C 1.34779 * 126.03046 * 178.46594 * 9 8 7 11 11 O 1.21581 * 120.00575 * 180.02562 * 10 9 8 12 12 N 1.34782 * 119.99665 * 0.02562 * 10 9 8 13 13 C 1.46496 * 119.99794 * 180.02562 * 12 10 9 14 14 C 1.53009 * 109.47056 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.46875 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00484 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99444 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00433 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99790 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47122 * 89.99819 * 19 17 15 21 21 H 1.48495 * 109.47374 * 209.99668 * 19 17 15 22 22 H 1.48497 * 109.47146 * 330.00099 * 19 17 15 23 23 C 1.46824 * 107.94369 * 358.72566 * 9 8 7 24 24 H 1.09001 * 109.31353 * 269.23578 * 23 9 8 25 25 C 1.46706 * 111.00208 * 122.96071 * 2 1 3 26 26 H 1.09003 * 109.47022 * 56.04593 * 1 2 3 27 27 H 1.08996 * 109.47392 * 176.04546 * 1 2 3 28 28 H 1.09004 * 109.46961 * 296.04581 * 1 2 3 29 29 H 1.09006 * 109.57881 * 68.12252 * 3 2 1 30 30 H 1.08998 * 109.58382 * 307.71062 * 3 2 1 31 31 H 1.09008 * 109.33221 * 178.78864 * 4 3 2 32 32 H 1.08996 * 109.33237 * 59.30178 * 4 3 2 33 33 H 1.09002 * 110.81765 * 164.49994 * 7 5 4 34 34 H 1.08999 * 110.99388 * 41.03116 * 7 5 4 35 35 H 1.09009 * 109.93054 * 216.82809 * 8 7 5 36 36 H 1.09005 * 110.10477 * 95.59321 * 8 7 5 37 37 H 0.96998 * 120.00255 * 359.97438 * 12 10 9 38 38 H 1.09005 * 109.47469 * 299.99627 * 13 12 10 39 39 H 1.09002 * 109.47237 * 60.00260 * 13 12 10 40 40 H 1.08999 * 109.46500 * 299.99740 * 14 13 12 41 41 H 1.09002 * 109.46846 * 60.00068 * 14 13 12 42 42 H 0.97001 * 120.00148 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.15041 * 295.77854 * 25 2 1 44 44 H 1.08998 * 109.14964 * 54.98823 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9961 1.3730 0.0000 4 6 3.5098 1.3192 -0.1992 5 6 4.1686 0.5429 0.9439 6 1 4.1968 1.1107 1.8739 7 6 5.5850 0.1208 0.4463 8 6 5.2686 -1.0750 -0.4806 9 7 3.9715 -1.6265 -0.0452 10 6 3.3201 -2.6618 -0.6112 11 8 2.2515 -3.0271 -0.1610 12 7 3.8535 -3.2924 -1.6763 13 6 3.1453 -4.4174 -2.2918 14 6 3.9602 -4.9483 -3.4730 15 6 3.2313 -6.1052 -4.1065 16 1 2.2821 -6.4296 -3.7066 17 6 3.7770 -6.7501 -5.1962 18 7 4.9332 -6.3554 -5.6830 19 14 2.8738 -8.1846 -5.9812 20 1 1.9711 -7.6782 -7.0460 21 1 3.8586 -9.1253 -6.5732 22 1 2.0738 -8.8907 -4.9484 23 6 3.5122 -0.8446 1.1095 24 1 3.8760 -1.3082 2.0265 25 6 1.9948 -0.7452 1.1492 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0252 -0.0709 28 1 -0.3633 0.4513 0.9233 29 1 1.7697 1.8512 0.9531 30 1 1.5406 1.9392 -0.8124 31 1 3.9070 2.3340 -0.2221 32 1 3.7319 0.8260 -1.1455 33 1 6.2118 -0.1918 1.2815 34 1 6.0597 0.9281 -0.1113 35 1 6.0454 -1.8339 -0.3865 36 1 5.2010 -0.7392 -1.5155 37 1 4.7060 -3.0008 -2.0358 38 1 3.0131 -5.2102 -1.5556 39 1 2.1697 -4.0831 -2.6450 40 1 4.0919 -4.1553 -4.2091 41 1 4.9360 -5.2824 -3.1202 42 1 5.3172 -6.8094 -6.4494 43 1 1.7049 -0.2361 2.0684 44 1 1.5714 -1.7496 1.1481 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334947774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:24 Heat of formation + Delta-G solvation = -23.748011 kcal Electronic energy + Delta-G solvation = -23162.531174 eV Core-core repulsion = 19921.552836 eV Total energy + Delta-G solvation = -3240.978339 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73150 -38.36486 -36.42121 -34.69270 -32.89170 -32.58789 -30.53601 -30.01295 -28.80449 -26.11279 -24.76726 -23.43149 -23.06743 -21.73526 -20.95417 -20.00025 -18.89741 -17.30053 -16.50186 -16.27377 -15.56188 -15.31945 -14.95977 -14.52738 -14.46930 -14.28698 -14.12563 -13.49191 -13.14383 -13.07228 -12.93014 -12.50023 -12.35450 -12.21602 -12.03250 -11.82537 -11.73798 -11.46666 -11.11606 -10.97925 -10.88209 -10.58421 -10.52457 -10.39960 -10.22243 -9.58839 -9.34505 -9.10529 -8.52007 -8.37993 -8.22578 -8.01293 -6.03893 -4.06043 3.02544 3.33290 3.39172 3.43960 3.79231 3.95036 4.20300 4.43131 4.46056 4.58530 4.70464 4.98988 5.05586 5.10878 5.19418 5.27431 5.33212 5.33434 5.37862 5.50469 5.55809 5.59714 5.63792 5.74749 5.77228 5.88329 5.93617 5.99804 6.12135 6.18448 6.38357 6.50851 6.62550 6.87367 7.11108 7.14715 7.22038 7.49437 7.66357 7.71598 7.96137 8.33797 8.57497 8.99570 9.21399 9.58333 11.07878 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025423 B = 0.003768 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.094847 B = 7429.176244 C = 7989.285733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.523 5.523 3 C 0.051 3.949 4 C -0.107 4.107 5 C -0.103 4.103 6 H 0.093 0.907 7 C -0.127 4.127 8 C 0.100 3.900 9 N -0.627 5.627 10 C 0.728 3.272 11 O -0.590 6.590 12 N -0.739 5.739 13 C 0.143 3.857 14 C 0.013 3.987 15 C -0.518 4.518 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.168 3.832 24 H 0.068 0.932 25 C 0.039 3.961 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.018 0.982 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.390 0.610 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.261 0.739 43 H 0.027 0.973 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.172 18.106 14.031 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.247 5.247 3 C -0.077 4.077 4 C -0.145 4.145 5 C -0.122 4.122 6 H 0.112 0.888 7 C -0.164 4.164 8 C -0.023 4.023 9 N -0.367 5.367 10 C 0.431 3.569 11 O -0.468 6.468 12 N -0.392 5.392 13 C 0.020 3.980 14 C -0.024 4.024 15 C -0.557 4.557 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C 0.063 3.937 24 H 0.086 0.914 25 C -0.089 4.089 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.223 0.777 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.395 17.424 13.716 22.178 hybrid contribution -0.140 -0.170 -0.030 0.222 sum -0.535 17.254 13.686 22.029 Atomic orbital electron populations 1.22299 0.87190 1.02672 0.99542 1.62018 1.07519 1.12561 1.42621 1.22131 0.95641 0.90098 0.99843 1.21538 0.94359 0.99532 0.99087 1.22554 0.95068 0.95543 0.99033 0.88831 1.22882 0.96696 0.97456 0.99409 1.22063 0.85941 0.95672 0.98660 1.47319 1.21879 1.33473 1.34043 1.15396 0.82885 0.78480 0.80165 1.90747 1.22063 1.68200 1.65832 1.45518 1.25514 1.36342 1.31837 1.21530 0.95729 0.85260 0.95467 1.19316 0.95466 0.96238 0.91396 1.21064 1.06193 1.14915 1.13545 0.92254 1.24989 0.94964 0.97474 0.96857 1.69959 1.17552 1.41436 1.24494 0.86524 0.79430 0.82135 0.79534 1.20593 1.21227 1.19730 1.21203 0.93921 0.89978 0.88586 0.91402 1.22335 0.94526 1.01794 0.90276 0.91756 0.90895 0.96324 0.95297 0.91025 0.91672 0.90597 0.90730 0.90026 0.91704 0.91678 0.77674 0.93010 0.92897 0.96065 0.96101 0.92930 0.95511 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.59 60.06 0.58 0.95 16 2 N -0.52 -7.00 4.98 -243.65 -1.21 -8.21 16 3 C 0.05 0.53 5.47 -3.85 -0.02 0.51 16 4 C -0.11 -1.02 5.12 -26.81 -0.14 -1.15 16 5 C -0.10 -0.92 3.69 -88.28 -0.33 -1.24 16 6 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 7 C -0.13 -1.01 6.32 -24.33 -0.15 -1.16 16 8 C 0.10 1.10 5.42 -2.66 -0.01 1.08 16 9 N -0.63 -9.01 3.12 -169.45 -0.53 -9.54 16 10 C 0.73 13.62 8.31 -86.91 -0.72 12.90 16 11 O -0.59 -12.75 13.84 5.29 0.07 -12.68 16 12 N -0.74 -14.13 5.52 -65.22 -0.36 -14.49 16 13 C 0.14 3.22 5.61 -4.04 -0.02 3.19 16 14 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 15 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 16 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 19 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.17 2.05 3.18 -67.48 -0.21 1.83 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 C 0.04 0.52 4.24 -4.38 -0.02 0.50 16 26 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.03 0.28 8.11 -51.93 -0.42 -0.14 16 30 H 0.07 0.72 8.06 -51.93 -0.42 0.30 16 31 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.08 0.88 6.77 -51.93 -0.35 0.52 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.54 8.01 -51.93 -0.42 0.12 16 35 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.06 0.72 7.73 -51.93 -0.40 0.32 16 37 H 0.39 6.70 7.49 -40.82 -0.31 6.39 16 38 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 43 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 44 H 0.12 1.93 5.61 -51.93 -0.29 1.64 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -32.31 341.81 -10.41 -42.71 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.64 Total: 2.01 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -1.61 Total: 4.18 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -1.36 Total: -58.05 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.31 -10.41 -42.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334947774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.967 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds