Wall clock time and date at job start Tue Mar 31 2020 05:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99786 * 2 1 4 4 H 1.48505 * 109.47425 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47378 * 299.99856 * 3 2 1 6 6 H 1.48501 * 109.47358 * 60.00135 * 3 2 1 7 7 C 1.37871 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00437 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99955 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47269 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99842 * 180.27725 * 10 9 7 12 12 O 1.21583 * 120.00508 * 354.74836 * 11 10 9 13 13 N 1.34783 * 119.99968 * 174.74151 * 11 10 9 14 14 C 1.46927 * 120.62654 * 4.78087 * 13 11 10 15 15 C 1.52755 * 109.00776 * 233.57858 * 14 13 11 16 16 C 1.53044 * 109.38671 * 305.59042 * 15 14 13 17 17 C 1.53040 * 109.53369 * 61.23418 * 16 15 14 18 18 H 1.09003 * 109.49296 * 58.59555 * 17 16 15 19 19 N 1.46908 * 109.51993 * 178.67055 * 17 16 15 20 20 C 1.48537 * 110.99632 * 178.80009 * 19 17 16 21 21 C 1.54943 * 103.22322 * 159.71909 * 20 19 17 22 22 C 1.54591 * 102.92166 * 322.58506 * 21 20 19 23 23 C 1.47900 * 110.99930 * 296.19375 * 19 17 16 24 24 C 1.46918 * 120.63351 * 185.05454 * 13 11 10 25 25 H 0.96998 * 120.00036 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46821 * 60.00563 * 9 7 2 27 27 H 1.08997 * 109.47418 * 300.00851 * 9 7 2 28 28 H 0.97005 * 119.99608 * 0.02562 * 10 9 7 29 29 H 1.08998 * 109.58950 * 353.41591 * 14 13 11 30 30 H 1.09004 * 109.58747 * 113.83758 * 14 13 11 31 31 H 1.09001 * 109.56627 * 185.55129 * 15 14 13 32 32 H 1.09003 * 109.36221 * 65.50407 * 15 14 13 33 33 H 1.09007 * 109.45507 * 301.21871 * 16 15 14 34 34 H 1.08994 * 109.44872 * 181.25474 * 16 15 14 35 35 H 1.08995 * 110.66401 * 278.15067 * 20 19 17 36 36 H 1.08993 * 110.66974 * 41.28667 * 20 19 17 37 37 H 1.09000 * 110.71973 * 204.22409 * 21 20 19 38 38 H 1.09004 * 110.87182 * 81.01271 * 21 20 19 39 39 H 1.09000 * 110.30512 * 263.03797 * 22 21 20 40 40 H 1.08997 * 110.39082 * 140.91860 * 22 21 20 41 41 H 1.09007 * 109.91802 * 333.50800 * 23 19 17 42 42 H 1.08994 * 109.91851 * 94.60720 * 23 19 17 43 43 H 1.09002 * 109.58792 * 246.16300 * 24 13 11 44 44 H 1.09000 * 109.58616 * 6.58723 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 -0.0062 12 8 0.5624 -5.1073 0.0851 13 7 2.6256 -5.9058 -0.1132 14 6 4.0737 -5.6573 -0.1193 15 6 4.6857 -6.3130 -1.3558 16 6 4.3016 -7.7941 -1.3882 17 6 2.7792 -7.9261 -1.4728 18 1 2.4191 -7.4173 -2.3670 19 7 2.4125 -9.3472 -1.5360 20 6 0.9375 -9.5144 -1.5900 21 6 0.7635 -10.9404 -2.1705 22 6 1.9056 -11.0329 -3.2082 23 6 2.9349 -9.9751 -2.7690 24 6 2.1457 -7.2893 -0.2319 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 3.1569 -3.4353 -0.0002 29 1 4.2602 -4.5838 -0.1465 30 1 4.5217 -6.0855 0.7775 31 1 5.7711 -6.2194 -1.3192 32 1 4.3077 -5.8194 -2.2511 33 1 4.6586 -8.2817 -0.4810 34 1 4.7561 -8.2679 -2.2582 35 1 0.5064 -9.4505 -0.5910 36 1 0.4902 -8.7726 -2.2514 37 1 -0.2074 -11.0436 -2.6551 38 1 0.8870 -11.6941 -1.3928 39 1 1.5300 -10.8042 -4.2055 40 1 2.3538 -12.0264 -3.1921 41 1 3.0496 -9.2224 -3.5491 42 1 3.8953 -10.4489 -2.5663 43 1 2.4332 -7.8532 0.6555 44 1 1.0604 -7.2921 -0.3335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335345434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:11 Heat of formation + Delta-G solvation = -26.124213 kcal Electronic energy + Delta-G solvation = -22722.717871 eV Core-core repulsion = 19481.636493 eV Total energy + Delta-G solvation = -3241.081378 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.20981 -38.90508 -36.73644 -34.24697 -33.16520 -32.13198 -31.81569 -29.16415 -28.61811 -27.10237 -24.97507 -23.26882 -22.45699 -21.45078 -20.84267 -20.13912 -19.09986 -18.09183 -16.30014 -16.21890 -15.88559 -15.51154 -14.90148 -14.65877 -14.48990 -14.45648 -13.99133 -13.40650 -13.26791 -13.10767 -13.03976 -12.86608 -12.34440 -12.04755 -11.80721 -11.74076 -11.57183 -11.47649 -11.21475 -10.99823 -10.90631 -10.88936 -10.82540 -10.76416 -10.43673 -10.26614 -9.36264 -9.31625 -8.72271 -8.58924 -8.37408 -7.70261 -6.14271 -4.20713 3.12795 3.24580 3.31835 3.35006 3.82420 3.93637 4.32418 4.43758 4.45576 4.65774 4.74013 4.83938 4.84466 5.00534 5.09113 5.12625 5.21867 5.29199 5.31552 5.45262 5.49878 5.57514 5.61560 5.64184 5.77608 5.79194 5.81304 5.84276 5.91125 5.96703 5.98419 6.07519 6.23262 6.67281 6.74310 6.98532 7.17126 7.53456 7.56317 7.59268 7.88090 8.03767 8.77546 8.92284 9.33907 9.49251 10.96067 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031119 B = 0.003412 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.543631 B = 8204.426274 C = 8700.873922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.729 5.729 11 C 0.698 3.302 12 O -0.599 6.599 13 N -0.637 5.637 14 C 0.112 3.888 15 C -0.135 4.135 16 C -0.107 4.107 17 C 0.062 3.938 18 H 0.046 0.954 19 N -0.511 5.511 20 C 0.031 3.969 21 C -0.123 4.123 22 C -0.132 4.132 23 C 0.038 3.962 24 C 0.141 3.859 25 H 0.265 0.735 26 H 0.023 0.977 27 H 0.025 0.975 28 H 0.386 0.614 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.333 -20.169 -4.947 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.383 5.383 11 C 0.399 3.601 12 O -0.478 6.478 13 N -0.377 5.377 14 C -0.012 4.012 15 C -0.174 4.174 16 C -0.145 4.145 17 C -0.048 4.048 18 H 0.064 0.936 19 N -0.236 5.236 20 C -0.097 4.097 21 C -0.161 4.161 22 C -0.170 4.170 23 C -0.090 4.090 24 C 0.017 3.983 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.221 0.779 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.478 -20.367 -4.416 22.498 hybrid contribution 0.626 1.479 -0.822 1.804 sum 9.104 -18.888 -5.237 21.611 Atomic orbital electron populations 1.69991 1.06083 1.27129 1.49073 1.24945 0.94912 0.99394 0.94794 0.86365 0.79808 0.83005 0.77730 1.19657 1.20833 1.20795 1.21252 0.93245 0.90434 1.52942 0.91976 1.18987 0.87831 0.81132 0.97574 1.45883 1.10834 1.04395 1.77236 1.16045 0.84752 0.81060 0.78241 1.90852 1.14446 1.83843 1.58662 1.47241 1.05330 1.05885 1.79251 1.21488 0.80971 1.00928 0.97805 1.21863 1.00707 0.95772 0.99016 1.21522 0.94260 0.96160 1.02564 1.22223 0.96290 0.87776 0.98482 0.93563 1.64760 1.09306 1.13433 1.36096 1.23283 0.88568 0.96328 1.01526 1.22471 0.98205 0.97041 0.98378 1.22399 0.96273 0.99363 0.98943 1.22829 0.98816 0.96468 0.90937 1.21250 1.00206 0.80583 0.96265 0.92530 0.95896 0.95656 0.77935 0.89998 0.91664 0.90509 0.91469 0.90939 0.92004 0.89572 0.93382 0.91118 0.90741 0.91650 0.91108 0.93841 0.90421 0.91469 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.27 7.26 5.43 -5.19 -0.03 7.24 16 10 N -0.73 -16.23 5.46 -66.41 -0.36 -16.59 16 11 C 0.70 15.16 8.30 -86.92 -0.72 14.44 16 12 O -0.60 -15.45 15.79 5.29 0.08 -15.37 16 13 N -0.64 -10.47 2.98 -178.77 -0.53 -11.01 16 14 C 0.11 1.40 6.40 -3.93 -0.03 1.38 16 15 C -0.13 -1.40 6.06 -26.83 -0.16 -1.56 16 16 C -0.11 -1.09 5.16 -26.69 -0.14 -1.23 16 17 C 0.06 0.75 1.78 -67.59 -0.12 0.63 16 18 H 0.05 0.64 7.98 -51.93 -0.41 0.23 16 19 N -0.51 -5.56 5.11 -222.35 -1.14 -6.70 16 20 C 0.03 0.33 5.40 -1.89 -0.01 0.32 16 21 C -0.12 -1.03 7.06 -24.87 -0.18 -1.21 16 22 C -0.13 -1.04 6.93 -25.38 -0.18 -1.21 16 23 C 0.04 0.34 5.48 -2.76 -0.02 0.33 16 24 C 0.14 2.06 5.38 -3.72 -0.02 2.04 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.39 7.42 5.78 -40.82 -0.24 7.18 16 29 H 0.08 1.04 5.57 -51.93 -0.29 0.75 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.57 7.25 -51.93 -0.38 0.19 16 35 H 0.09 0.94 7.78 -51.93 -0.40 0.53 16 36 H 0.05 0.57 8.01 -51.93 -0.42 0.15 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.04 0.41 7.65 -51.92 -0.40 0.02 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.09 1.52 6.12 -51.93 -0.32 1.20 16 LS Contribution 341.36 15.07 5.14 5.14 Total: -1.00 -32.51 341.36 -10.55 -43.06 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.46 Total: 3.49 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -2.01 Total: 7.64 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -1.29 Total: -59.92 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.08 Total: -15.37 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.51 -10.55 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335345434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.936 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds