Wall clock time and date at job start Tue Mar 31 2020 05:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99956 * 2 1 4 4 H 1.48497 * 109.46849 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.46929 * 120.00490 * 3 2 1 6 6 H 1.48500 * 109.46958 * 240.00402 * 3 2 1 7 7 C 1.37874 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00110 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47479 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00406 * 179.97438 * 10 9 7 12 12 O 1.21585 * 119.99709 * 355.01353 * 11 10 9 13 13 N 1.34775 * 120.00425 * 175.00898 * 11 10 9 14 14 C 1.46931 * 120.62536 * 4.94924 * 13 11 10 15 15 C 1.53627 * 108.54273 * 126.36730 * 14 13 11 16 16 C 1.53043 * 109.24343 * 54.85335 * 15 14 13 17 17 C 1.53040 * 109.53450 * 298.51332 * 16 15 14 18 18 H 1.09002 * 109.52329 * 301.39328 * 17 16 15 19 19 N 1.46906 * 109.49291 * 181.31823 * 17 16 15 20 20 C 1.48531 * 110.99869 * 57.76574 * 19 17 16 21 21 C 1.54940 * 103.22398 * 159.71910 * 20 19 17 22 22 C 1.54597 * 102.92499 * 322.58322 * 21 20 19 23 23 C 1.47912 * 110.99507 * 175.15716 * 19 17 16 24 24 C 1.46920 * 120.63381 * 185.22339 * 13 11 10 25 25 H 0.97006 * 120.00086 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46817 * 299.99676 * 9 7 2 27 27 H 1.09004 * 109.47332 * 59.99549 * 9 7 2 28 28 H 0.97005 * 120.00039 * 359.97438 * 10 9 7 29 29 H 1.09006 * 109.58330 * 246.19503 * 14 13 11 30 30 H 1.08995 * 109.58933 * 6.62296 * 14 13 11 31 31 H 1.09001 * 109.63123 * 294.85844 * 15 14 13 32 32 H 1.09001 * 109.45534 * 174.73948 * 15 14 13 33 33 H 1.08996 * 109.46001 * 178.49393 * 16 15 14 34 34 H 1.08994 * 109.44796 * 58.52401 * 16 15 14 35 35 H 1.08998 * 110.66422 * 278.14779 * 20 19 17 36 36 H 1.09000 * 110.67437 * 41.28561 * 20 19 17 37 37 H 1.09004 * 110.72378 * 204.22345 * 21 20 19 38 38 H 1.09003 * 110.72574 * 80.94011 * 21 20 19 39 39 H 1.09002 * 110.30891 * 263.04500 * 22 21 20 40 40 H 1.09000 * 110.39644 * 140.91484 * 22 21 20 41 41 H 1.08993 * 109.91919 * 333.51097 * 23 19 17 42 42 H 1.09000 * 109.91135 * 94.60503 * 23 19 17 43 43 H 1.09000 * 109.58515 * 353.37731 * 24 13 11 44 44 H 1.09001 * 109.58859 * 113.65726 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1028 1.6965 -1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 1.7538 -4.8833 -0.0019 12 8 0.5621 -5.1068 0.0891 13 7 2.6254 -5.9063 -0.1032 14 6 4.0736 -5.6582 -0.1050 15 6 4.7189 -6.5237 0.9880 16 6 4.3320 -7.9877 0.7661 17 6 2.8124 -8.1366 0.8688 18 1 2.4785 -7.7971 1.8493 19 7 2.4446 -9.5472 0.6870 20 6 3.1201 -10.4072 1.6922 21 6 2.2509 -11.6898 1.7028 22 6 0.8170 -11.1371 1.5346 23 6 0.9939 -9.7477 0.8946 24 6 2.1455 -7.2900 -0.2199 25 1 -0.4850 -0.8401 0.0004 26 1 0.6241 -2.5575 0.8881 27 1 0.6246 -2.5563 -0.8919 28 1 3.1567 -3.4354 -0.0010 29 1 4.4885 -5.9236 -1.0775 30 1 4.2643 -4.6050 0.1008 31 1 4.3676 -6.1989 1.9673 32 1 5.8031 -6.4224 0.9384 33 1 4.8098 -8.6084 1.5241 34 1 4.6619 -8.3043 -0.2233 35 1 4.1392 -10.6356 1.3803 36 1 3.1144 -9.9305 2.6725 37 1 2.3524 -12.2167 2.6516 38 1 2.5137 -12.3407 0.8689 39 1 0.3299 -11.0470 2.5056 40 1 0.2349 -11.7844 0.8786 41 1 0.6046 -8.9790 1.5621 42 1 0.4730 -9.7071 -0.0620 43 1 1.0636 -7.3137 -0.0898 44 1 2.4041 -7.6848 -1.2024 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335345435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:13 Heat of formation + Delta-G solvation = -30.024285 kcal Electronic energy + Delta-G solvation = -22724.493481 eV Core-core repulsion = 19483.242982 eV Total energy + Delta-G solvation = -3241.250498 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26889 -38.98589 -36.79575 -34.47248 -33.28394 -32.18993 -31.85070 -29.17549 -28.64031 -26.74356 -24.89590 -23.28927 -22.56618 -21.67245 -20.70677 -20.31187 -19.17560 -18.23430 -16.68761 -16.22592 -16.13182 -15.56022 -15.10786 -14.60475 -14.31789 -14.16663 -13.81568 -13.53314 -13.39494 -13.20772 -13.16926 -12.96938 -12.30063 -12.19512 -11.95099 -11.89782 -11.57392 -11.49621 -11.39349 -11.11032 -10.98852 -10.81182 -10.79170 -10.74995 -10.46520 -10.15243 -9.49354 -8.77493 -8.69310 -8.63441 -8.43182 -7.83788 -6.49877 -4.22895 3.05276 3.38309 3.40246 3.59331 3.74987 3.84777 4.37613 4.41702 4.43705 4.59037 4.69751 4.77558 4.79610 4.93061 5.03465 5.06938 5.24006 5.26445 5.29246 5.39200 5.44544 5.54694 5.56127 5.57984 5.72760 5.74413 5.76333 5.79602 5.86571 5.87821 5.95977 6.03457 6.17078 6.61258 6.69224 6.88565 6.99864 7.28321 7.36621 7.45842 7.83140 8.30006 8.62353 8.80437 9.25044 9.51651 10.90457 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034803 B = 0.003347 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.342225 B = 8363.688954 C = 8947.485680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 1.076 2.924 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.622 4.622 8 H 0.056 0.944 9 C 0.257 3.743 10 N -0.724 5.724 11 C 0.698 3.302 12 O -0.601 6.601 13 N -0.637 5.637 14 C 0.112 3.888 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.063 3.937 18 H 0.046 0.954 19 N -0.511 5.511 20 C 0.036 3.964 21 C -0.123 4.123 22 C -0.131 4.131 23 C 0.032 3.968 24 C 0.142 3.858 25 H 0.273 0.727 26 H 0.015 0.985 27 H 0.014 0.986 28 H 0.388 0.612 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.293 -21.384 2.684 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.183 4.183 3 Si 0.903 3.097 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.660 4.660 8 H 0.074 0.926 9 C 0.135 3.865 10 N -0.378 5.378 11 C 0.399 3.601 12 O -0.480 6.480 13 N -0.376 5.376 14 C -0.012 4.012 15 C -0.172 4.172 16 C -0.147 4.147 17 C -0.047 4.047 18 H 0.064 0.936 19 N -0.236 5.236 20 C -0.092 4.092 21 C -0.161 4.161 22 C -0.169 4.169 23 C -0.096 4.096 24 C 0.017 3.983 25 H 0.083 0.917 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.223 0.777 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.316 -19.952 2.197 22.129 hybrid contribution 0.482 -1.344 0.879 1.677 sum 9.799 -21.296 3.076 23.643 Atomic orbital electron populations 1.70751 1.06865 1.31093 1.44967 1.25871 0.96431 1.02671 0.93358 0.83448 0.74804 0.74889 0.76542 1.20552 1.21316 1.21286 1.22051 0.94498 0.91506 1.57963 0.92611 1.19040 0.88533 0.82645 0.96275 1.45676 1.10758 1.04106 1.77292 1.16049 0.84811 0.81094 0.78122 1.90846 1.14490 1.83909 1.58770 1.47226 1.05381 1.05761 1.79223 1.21682 0.80737 1.00047 0.98768 1.22002 1.00585 0.95072 0.99579 1.21566 0.94272 0.96245 1.02660 1.22208 0.96123 0.87931 0.98412 0.93563 1.64745 1.05560 1.05955 1.47346 1.23212 0.98810 0.93235 0.93947 1.22476 0.94632 0.97101 1.01922 1.22399 0.97343 0.96329 1.00845 1.22905 0.89335 0.96486 1.00888 1.21238 1.00131 0.79371 0.97512 0.91653 0.96732 0.96831 0.77663 0.91468 0.90050 0.91509 0.90472 0.91862 0.90862 0.89979 0.93830 0.91213 0.90731 0.91608 0.90973 0.93371 0.90021 0.89159 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.65 55.43 0.76 -26.91 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 24.60 29.90 -169.99 -5.08 19.51 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.62 -17.40 9.28 -34.44 -0.32 -17.72 16 8 H 0.06 1.47 7.60 -52.49 -0.40 1.07 16 9 C 0.26 7.01 4.74 -5.20 -0.02 6.99 16 10 N -0.72 -16.28 5.46 -66.42 -0.36 -16.64 16 11 C 0.70 15.20 8.30 -86.92 -0.72 14.48 16 12 O -0.60 -15.43 15.77 5.29 0.08 -15.35 16 13 N -0.64 -10.47 2.97 -178.23 -0.53 -11.00 16 14 C 0.11 1.40 6.42 -3.48 -0.02 1.38 16 15 C -0.13 -1.37 6.10 -26.38 -0.16 -1.53 16 16 C -0.11 -1.09 5.00 -26.69 -0.13 -1.22 16 17 C 0.06 0.76 1.80 -67.59 -0.12 0.63 16 18 H 0.05 0.64 7.96 -51.93 -0.41 0.23 16 19 N -0.51 -5.51 5.11 -222.35 -1.14 -6.65 16 20 C 0.04 0.31 5.32 -1.90 -0.01 0.30 16 21 C -0.12 -0.93 7.06 -24.87 -0.18 -1.11 16 22 C -0.13 -1.10 6.93 -25.37 -0.18 -1.27 16 23 C 0.03 0.34 5.65 -2.75 -0.02 0.32 16 24 C 0.14 2.07 5.60 -3.72 -0.02 2.05 16 25 H 0.27 8.50 7.22 -40.82 -0.29 8.21 16 26 H 0.01 0.44 8.01 -51.93 -0.42 0.02 16 27 H 0.01 0.41 8.01 -51.93 -0.42 -0.01 16 28 H 0.39 7.61 5.81 -40.82 -0.24 7.38 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.04 5.64 -51.93 -0.29 0.75 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.56 6.82 -51.93 -0.35 0.20 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.65 7.63 -51.93 -0.40 0.26 16 36 H 0.04 0.40 8.02 -51.93 -0.42 -0.02 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 1.52 6.40 -51.93 -0.33 1.19 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 340.01 15.07 5.12 5.12 Total: -1.00 -33.23 340.01 -10.53 -43.77 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.39 Total: 4.30 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -2.00 Total: 3.85 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -1.27 Total: -61.20 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.08 Total: -15.35 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.51 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.23 -10.53 -43.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335345435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.741 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds