Wall clock time and date at job start Tue Mar 31 2020 05:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48502 * 109.46696 * 269.99584 * 3 2 1 5 5 H 1.48493 * 109.47295 * 29.99950 * 3 2 1 6 6 H 1.48502 * 109.47078 * 149.99682 * 3 2 1 7 7 C 1.37875 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00368 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47710 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.46397 * 174.99844 * 10 9 7 12 12 C 1.53196 * 109.30952 * 181.38309 * 11 10 9 13 13 N 1.46917 * 108.77688 * 305.36202 * 12 11 10 14 14 C 1.34780 * 120.63144 * 233.58907 * 13 12 11 15 15 O 1.21584 * 119.99810 * 5.22053 * 14 13 12 16 16 N 1.34779 * 119.99652 * 185.22693 * 14 13 12 17 17 C 1.46503 * 119.99420 * 175.01284 * 16 14 13 18 18 H 1.08995 * 110.27900 * 324.35712 * 17 16 14 19 19 C 1.54601 * 110.30658 * 202.16620 * 17 16 14 20 20 C 1.54938 * 102.92329 * 263.04395 * 19 17 16 21 21 N 1.48812 * 103.34672 * 322.69092 * 20 19 17 22 22 C 1.47900 * 105.68055 * 38.97567 * 21 20 19 23 23 C 1.46932 * 118.74061 * 53.86674 * 13 12 11 24 24 C 1.53045 * 109.45876 * 295.06779 * 10 9 7 25 25 H 0.96999 * 120.00559 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47466 * 59.99220 * 9 7 2 27 27 H 1.09012 * 109.46706 * 299.99985 * 9 7 2 28 28 H 1.09001 * 109.45156 * 55.02851 * 10 9 7 29 29 H 1.08998 * 109.49578 * 61.43164 * 11 10 9 30 30 H 1.08994 * 109.49428 * 301.33512 * 11 10 9 31 31 H 1.09008 * 109.58278 * 185.57464 * 12 11 10 32 32 H 1.08995 * 109.58628 * 65.15649 * 12 11 10 33 33 H 0.96994 * 120.00405 * 355.00743 * 16 14 13 34 34 H 1.09004 * 110.72389 * 21.40158 * 19 17 16 35 35 H 1.08999 * 110.72687 * 144.50723 * 19 17 16 36 36 H 1.09000 * 110.66658 * 81.01409 * 20 19 17 37 37 H 1.08995 * 110.66608 * 203.98832 * 20 19 17 38 38 H 1.00897 * 110.95846 * 278.57403 * 21 20 19 39 39 H 1.09005 * 109.92272 * 215.45371 * 22 21 20 40 40 H 1.08997 * 109.91990 * 94.35520 * 22 21 20 41 41 H 1.09002 * 109.58321 * 65.91909 * 23 13 12 42 42 H 1.08997 * 109.58709 * 186.34961 * 23 13 12 43 43 H 1.09003 * 109.49381 * 298.56404 * 24 10 9 44 44 H 1.09007 * 109.49624 * 58.62497 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4839 -4.9837 0.1276 12 6 2.4844 -6.1433 0.1633 13 7 3.3513 -6.0565 -1.0197 14 6 3.4937 -7.1122 -1.8455 15 8 2.8303 -8.1157 -1.6693 16 7 4.3716 -7.0552 -2.8666 17 6 4.6065 -8.2388 -3.6973 18 1 4.5566 -9.1426 -3.0901 19 6 5.9799 -8.1373 -4.3999 20 6 5.6125 -7.5878 -5.8012 21 7 4.3271 -8.2703 -6.1116 22 6 3.5748 -8.3041 -4.8387 23 6 4.0648 -4.7992 -1.2821 24 6 3.0423 -3.6529 -1.3047 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.9283 -3.5548 0.8445 29 1 0.8188 -5.1032 -0.7276 30 1 0.8983 -4.9800 1.0468 31 1 1.9459 -7.0910 0.1531 32 1 3.0908 -6.0750 1.0665 33 1 4.8478 -6.2307 -3.0514 34 1 6.6328 -7.4420 -3.8720 35 1 6.4469 -9.1191 -4.4779 36 1 5.4725 -6.5074 -5.7662 37 1 6.3779 -7.8520 -6.5308 38 1 4.4889 -9.2030 -6.4608 39 1 3.0028 -9.2294 -4.7697 40 1 2.9032 -7.4475 -4.7814 41 1 4.7974 -4.6236 -0.4944 42 1 4.5693 -4.8598 -2.2464 43 1 2.3625 -3.7850 -2.1464 44 1 3.5653 -2.7018 -1.4051 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335488621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:06 Heat of formation + Delta-G solvation = -35.032952 kcal Electronic energy + Delta-G solvation = -22670.356921 eV Core-core repulsion = 19428.889231 eV Total energy + Delta-G solvation = -3241.467690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.48139 -38.77202 -37.20150 -34.21550 -33.76405 -32.06780 -30.70134 -29.65597 -28.55846 -27.57306 -24.56617 -22.91047 -22.25786 -22.01944 -20.86653 -20.07227 -19.26005 -17.88451 -16.79684 -16.41764 -16.24883 -15.52875 -14.91761 -14.56807 -14.39530 -14.23744 -13.95163 -13.66548 -13.25571 -13.13306 -12.87419 -12.71909 -12.25574 -12.07380 -11.87373 -11.78647 -11.53889 -11.27256 -11.18390 -10.98585 -10.82182 -10.69407 -10.47887 -10.12728 -9.96476 -9.64543 -9.41874 -9.26603 -8.97188 -8.80649 -8.36521 -8.23189 -6.00697 -4.02946 2.71568 3.27951 3.29731 3.36752 3.38720 3.85495 3.99435 4.30527 4.44075 4.60788 4.70359 4.97761 5.10194 5.13186 5.29199 5.32742 5.34473 5.45728 5.47194 5.51935 5.57706 5.66873 5.71289 5.77766 5.90086 6.00207 6.10219 6.28844 6.35260 6.40255 6.50651 6.54881 6.65500 6.95794 6.99464 7.02614 7.08947 7.11115 7.66298 7.81161 7.99059 8.01497 8.41184 8.67921 9.03638 9.60885 11.10550 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023050 B = 0.003597 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.478342 B = 7783.475184 C = 8436.841805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.080 4.080 11 C -0.130 4.130 12 C 0.130 3.870 13 N -0.622 5.622 14 C 0.707 3.293 15 O -0.598 6.598 16 N -0.741 5.741 17 C 0.137 3.863 18 H 0.091 0.909 19 C -0.166 4.166 20 C 0.040 3.960 21 N -0.673 5.673 22 C 0.030 3.970 23 C 0.110 3.890 24 C -0.118 4.118 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.396 0.604 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.336 0.664 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.583 -15.637 -7.840 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.098 4.098 11 C -0.168 4.168 12 C 0.007 3.993 13 N -0.359 5.359 14 C 0.409 3.591 15 O -0.477 6.477 16 N -0.399 5.399 17 C 0.029 3.971 18 H 0.109 0.891 19 C -0.206 4.206 20 C -0.089 4.089 21 N -0.299 5.299 22 C -0.101 4.101 23 C -0.013 4.013 24 C -0.156 4.156 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.233 0.767 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.151 0.849 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.588 -15.685 -8.009 21.082 hybrid contribution 1.134 0.847 0.461 1.489 sum 12.722 -14.839 -7.549 20.953 Atomic orbital electron populations 1.69962 1.06058 1.26545 1.50863 1.25025 0.94795 0.99177 0.95471 0.86649 0.79861 0.83762 0.78042 1.20738 1.21301 1.19920 1.21232 0.92891 0.90975 1.50397 0.92633 1.19126 0.93623 0.91003 0.97223 1.21175 0.97957 0.94746 0.95952 1.22042 0.97704 0.94860 1.02234 1.21549 0.92026 1.00293 0.85425 1.47347 1.49322 1.12021 1.27170 1.15838 0.80372 0.83465 0.79413 1.90875 1.49293 1.32187 1.75337 1.45351 1.46664 1.14856 1.33059 1.22000 0.94010 0.88999 0.92088 0.89084 1.23402 0.96586 1.02704 0.97917 1.23209 0.91017 1.00210 0.94500 1.62862 1.16973 1.23005 1.27105 1.23276 0.96730 1.03294 0.86752 1.21886 0.95172 0.84257 1.00004 1.21973 0.97478 0.96927 0.99234 0.93034 0.96645 0.96570 0.92377 0.92060 0.91134 0.89585 0.92093 0.76717 0.89979 0.90066 0.90003 0.90443 0.84880 0.90889 0.89820 0.91558 0.91623 0.92255 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.92 8.39 -34.44 -0.29 -14.21 16 8 H 0.06 1.43 7.06 -52.49 -0.37 1.06 16 9 C 0.03 0.68 4.45 -27.89 -0.12 0.55 16 10 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 11 C -0.13 -2.22 5.36 -26.61 -0.14 -2.36 16 12 C 0.13 1.98 6.44 -3.71 -0.02 1.95 16 13 N -0.62 -9.21 2.97 -178.23 -0.53 -9.74 16 14 C 0.71 10.82 8.29 -86.91 -0.72 10.10 16 15 O -0.60 -11.08 15.51 5.29 0.08 -10.99 16 16 N -0.74 -8.58 4.89 -57.34 -0.28 -8.86 16 17 C 0.14 1.37 3.26 -66.57 -0.22 1.15 16 18 H 0.09 1.03 7.72 -51.93 -0.40 0.63 16 19 C -0.17 -1.15 6.68 -24.87 -0.17 -1.32 16 20 C 0.04 0.29 7.55 -1.74 -0.01 0.27 16 21 N -0.67 -5.92 7.54 -109.87 -0.83 -6.75 16 22 C 0.03 0.32 7.30 -2.75 -0.02 0.30 16 23 C 0.11 1.46 6.42 -3.48 -0.02 1.44 16 24 C -0.12 -2.01 5.21 -26.39 -0.14 -2.14 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.09 1.36 7.00 -51.92 -0.36 1.00 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.40 3.89 6.02 -40.82 -0.25 3.64 16 34 H 0.08 0.53 7.96 -51.93 -0.41 0.11 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.34 2.34 8.92 -39.29 -0.35 1.99 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.08 7.92 -51.93 -0.41 0.67 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.71 5.64 -51.93 -0.29 0.42 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.50 6.91 -51.92 -0.36 1.14 16 LS Contribution 343.11 15.07 5.17 5.17 Total: -1.00 -31.86 343.11 -10.25 -42.10 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.42 Total: 3.27 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -2.16 Total: -4.50 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.90 Total: -51.18 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.86 -10.25 -42.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335488621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.071 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds