Wall clock time and date at job start Tue Mar 31 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48502 * 109.46696 * 269.99584 * 3 2 1 5 5 H 1.48493 * 109.47295 * 29.99950 * 3 2 1 6 6 H 1.48502 * 109.47078 * 149.99682 * 3 2 1 7 7 C 1.37875 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00368 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47710 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.46397 * 174.99844 * 10 9 7 12 12 C 1.53196 * 109.30952 * 181.38309 * 11 10 9 13 13 N 1.46917 * 108.77688 * 305.36202 * 12 11 10 14 14 C 1.34780 * 120.63144 * 233.58907 * 13 12 11 15 15 O 1.21584 * 119.99810 * 5.22053 * 14 13 12 16 16 N 1.34779 * 119.99652 * 185.22693 * 14 13 12 17 17 C 1.46503 * 119.99420 * 175.01284 * 16 14 13 18 18 H 1.08995 * 110.27900 * 324.35712 * 17 16 14 19 19 C 1.54601 * 110.30658 * 202.16620 * 17 16 14 20 20 C 1.54938 * 102.92329 * 263.04395 * 19 17 16 21 21 N 1.48812 * 103.34672 * 322.69092 * 20 19 17 22 22 C 1.47900 * 105.68055 * 38.97567 * 21 20 19 23 23 C 1.46932 * 118.74061 * 53.86674 * 13 12 11 24 24 C 1.53045 * 109.45876 * 295.06779 * 10 9 7 25 25 H 0.96999 * 120.00559 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47466 * 59.99220 * 9 7 2 27 27 H 1.09012 * 109.46706 * 299.99985 * 9 7 2 28 28 H 1.09001 * 109.45156 * 55.02851 * 10 9 7 29 29 H 1.08998 * 109.49578 * 61.43164 * 11 10 9 30 30 H 1.08994 * 109.49428 * 301.33512 * 11 10 9 31 31 H 1.09008 * 109.58278 * 185.57464 * 12 11 10 32 32 H 1.08995 * 109.58628 * 65.15649 * 12 11 10 33 33 H 0.96994 * 120.00405 * 355.00743 * 16 14 13 34 34 H 1.09004 * 110.72389 * 21.40158 * 19 17 16 35 35 H 1.08999 * 110.72687 * 144.50723 * 19 17 16 36 36 H 1.09000 * 110.66658 * 81.01409 * 20 19 17 37 37 H 1.08995 * 110.66608 * 203.98832 * 20 19 17 38 38 H 1.00897 * 110.95846 * 278.57403 * 21 20 19 39 39 H 1.09005 * 109.92272 * 215.45371 * 22 21 20 40 40 H 1.08997 * 109.91990 * 94.35520 * 22 21 20 41 41 H 1.09002 * 109.58321 * 65.91909 * 23 13 12 42 42 H 1.08997 * 109.58709 * 186.34961 * 23 13 12 43 43 H 1.09003 * 109.49381 * 298.56404 * 24 10 9 44 44 H 1.09007 * 109.49624 * 58.62497 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4839 -4.9837 0.1276 12 6 2.4844 -6.1433 0.1633 13 7 3.3513 -6.0565 -1.0197 14 6 3.4937 -7.1122 -1.8455 15 8 2.8303 -8.1157 -1.6693 16 7 4.3716 -7.0552 -2.8666 17 6 4.6065 -8.2388 -3.6973 18 1 4.5566 -9.1426 -3.0901 19 6 5.9799 -8.1373 -4.3999 20 6 5.6125 -7.5878 -5.8012 21 7 4.3271 -8.2703 -6.1116 22 6 3.5748 -8.3041 -4.8387 23 6 4.0648 -4.7992 -1.2821 24 6 3.0423 -3.6529 -1.3047 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.9283 -3.5548 0.8445 29 1 0.8188 -5.1032 -0.7276 30 1 0.8983 -4.9800 1.0468 31 1 1.9459 -7.0910 0.1531 32 1 3.0908 -6.0750 1.0665 33 1 4.8478 -6.2307 -3.0514 34 1 6.6328 -7.4420 -3.8720 35 1 6.4469 -9.1191 -4.4779 36 1 5.4725 -6.5074 -5.7662 37 1 6.3779 -7.8520 -6.5308 38 1 4.4889 -9.2030 -6.4608 39 1 3.0028 -9.2294 -4.7697 40 1 2.9032 -7.4475 -4.7814 41 1 4.7974 -4.6236 -0.4944 42 1 4.5693 -4.8598 -2.2464 43 1 2.3625 -3.7850 -2.1464 44 1 3.5653 -2.7018 -1.4051 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335488621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:05 Heat of formation + Delta-G solvation = -57.378604 kcal Electronic energy + Delta-G solvation = -22671.325901 eV Core-core repulsion = 19428.889231 eV Total energy + Delta-G solvation = -3242.436671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.59734 -39.69850 -38.48625 -35.71159 -35.03873 -33.83731 -31.96724 -30.40026 -29.88488 -28.82354 -26.25153 -24.21596 -23.68446 -22.82122 -21.89994 -21.27630 -20.57450 -19.06630 -18.39383 -17.65964 -17.25957 -16.63452 -16.49884 -16.01001 -15.35738 -15.29051 -15.14647 -14.84924 -14.64942 -14.43908 -14.27778 -13.90126 -13.61553 -13.36461 -12.99531 -12.84522 -12.73260 -12.60617 -12.49995 -12.31185 -12.18929 -12.06836 -11.98612 -11.74674 -11.40161 -11.24472 -10.97783 -10.83302 -10.51465 -10.37278 -9.66358 -9.36719 -8.15179 -6.25083 1.42663 1.43510 1.54160 1.64519 2.10126 2.43842 2.88077 3.18664 3.29434 3.62658 3.90412 3.94467 4.01561 4.05439 4.09257 4.20579 4.29219 4.41229 4.44429 4.52711 4.63471 4.68400 4.80450 4.86101 4.91151 4.92018 4.97312 5.05696 5.09232 5.14105 5.31796 5.33166 5.39107 5.49256 5.55697 5.60466 5.74828 5.82151 5.90492 5.98407 6.29849 6.45159 6.92064 6.93894 7.43913 7.53212 8.96944 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023050 B = 0.003597 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.478342 B = 7783.475184 C = 8436.841805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.005 4.005 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.526 4.526 8 H 0.069 0.931 9 C 0.032 3.968 10 C -0.072 4.072 11 C -0.122 4.122 12 C 0.137 3.863 13 N -0.625 5.625 14 C 0.703 3.297 15 O -0.634 6.634 16 N -0.727 5.727 17 C 0.133 3.867 18 H 0.078 0.922 19 C -0.152 4.152 20 C 0.040 3.960 21 N -0.682 5.682 22 C 0.035 3.965 23 C 0.119 3.881 24 C -0.113 4.113 25 H 0.260 0.740 26 H -0.019 1.019 27 H -0.015 1.015 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.406 0.594 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.348 0.652 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.040 0.960 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.997 -15.785 -8.428 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.202 4.202 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.182 1.182 7 C -0.564 4.564 8 H 0.087 0.913 9 C -0.005 4.005 10 C -0.091 4.091 11 C -0.161 4.161 12 C 0.014 3.986 13 N -0.361 5.361 14 C 0.404 3.596 15 O -0.516 6.516 16 N -0.385 5.385 17 C 0.025 3.975 18 H 0.096 0.904 19 C -0.191 4.191 20 C -0.089 4.089 21 N -0.310 5.310 22 C -0.096 4.096 23 C -0.003 4.003 24 C -0.151 4.151 25 H 0.069 0.931 26 H 0.000 1.000 27 H 0.004 0.996 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.245 0.755 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.164 0.836 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.059 0.941 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.051 -15.833 -8.626 23.486 hybrid contribution 0.000 0.870 0.606 1.060 sum 15.050 -14.963 -8.020 22.688 Atomic orbital electron populations 1.70120 1.08003 1.27498 1.52373 1.25995 0.95623 1.03394 0.95184 0.85496 0.78828 0.78681 0.78346 1.19967 1.21490 1.18219 1.21675 0.93689 0.91710 1.49284 0.91252 1.19027 0.94087 0.93320 0.94096 1.21024 0.97022 0.93321 0.97687 1.21928 0.97863 0.94806 1.01492 1.21433 0.91897 0.98617 0.86634 1.47384 1.49313 1.12469 1.26972 1.16031 0.80584 0.83018 0.79955 1.90850 1.50818 1.33629 1.76347 1.45278 1.45469 1.15844 1.31905 1.22133 0.95945 0.87856 0.91526 0.90394 1.23353 0.94625 1.04045 0.97097 1.23275 0.90643 0.99678 0.95281 1.62798 1.18040 1.24078 1.26069 1.23091 0.96774 1.01703 0.88062 1.21898 0.94016 0.81796 1.02608 1.21857 0.97765 0.98504 0.97003 0.93093 1.00023 0.99621 0.91561 0.94044 0.90980 0.90294 0.89928 0.75460 0.88726 0.88332 0.90693 0.88198 0.83566 0.91402 0.92717 0.89393 0.88582 0.94101 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.28 13.29 21.45 0.28 -56.99 16 2 C -0.01 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 7 C -0.53 -28.51 8.39 25.60 0.21 -28.29 16 8 H 0.07 3.50 7.06 -2.91 -0.02 3.48 16 9 C 0.03 1.64 4.45 29.85 0.13 1.77 16 10 C -0.07 -2.77 2.10 -10.77 -0.02 -2.79 16 11 C -0.12 -4.23 5.36 30.67 0.16 -4.07 16 12 C 0.14 4.04 6.44 86.37 0.56 4.59 16 13 N -0.63 -17.52 2.97 -836.06 -2.48 -20.00 16 14 C 0.70 20.71 8.29 179.05 1.48 22.20 16 15 O -0.63 -23.46 15.51 -3.98 -0.06 -23.52 16 16 N -0.73 -15.51 4.89 -453.60 -2.22 -17.73 16 17 C 0.13 2.46 3.26 45.87 0.15 2.60 16 18 H 0.08 1.69 7.72 -2.39 -0.02 1.67 16 19 C -0.15 -1.62 6.68 31.80 0.21 -1.41 16 20 C 0.04 0.46 7.55 86.59 0.65 1.12 16 21 N -0.68 -10.90 7.54 -501.52 -3.78 -14.68 16 22 C 0.04 0.72 7.30 86.45 0.63 1.35 16 23 C 0.12 2.85 6.42 86.51 0.56 3.41 16 24 C -0.11 -3.74 5.21 30.82 0.16 -3.58 16 25 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 26 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 27 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 28 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.08 2.48 7.00 -2.38 -0.02 2.46 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.41 6.80 6.02 -92.71 -0.56 6.24 16 34 H 0.09 0.83 7.96 -2.38 -0.02 0.81 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.35 4.19 8.92 -89.70 -0.80 3.39 16 39 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.05 1.44 7.92 -2.39 -0.02 1.42 16 41 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.10 1.73 5.64 -2.39 -0.01 1.72 16 43 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 2.67 6.91 -2.38 -0.02 2.66 16 Total: -1.00 -71.24 343.11 -1.24 -72.48 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -0.36 Total: 18.08 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 5.35 Total: -2.92 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -8.19 Total: -109.40 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.06 Total: -23.52 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -71.24 -1.24 -72.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335488621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.102 kcal (2) G-P(sol) polarization free energy of solvation -71.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds