Wall clock time and date at job start Tue Mar 31 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99637 * 2 1 4 4 H 1.48494 * 109.46942 * 239.99738 * 3 2 1 5 5 H 1.48501 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46931 * 120.00276 * 3 2 1 7 7 C 1.37877 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99952 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00210 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47288 * 180.02562 * 9 7 2 11 11 C 1.53042 * 109.45931 * 174.99959 * 10 9 7 12 12 C 1.53198 * 109.31120 * 181.38359 * 11 10 9 13 13 N 1.46924 * 108.77505 * 305.36461 * 12 11 10 14 14 C 1.34777 * 120.62946 * 233.58728 * 13 12 11 15 15 O 1.21584 * 120.00147 * 5.21841 * 14 13 12 16 16 N 1.34777 * 119.99765 * 185.22427 * 14 13 12 17 17 C 1.46496 * 119.99646 * 175.01096 * 16 14 13 18 18 H 1.08995 * 110.88101 * 37.38878 * 17 16 14 19 19 C 1.55398 * 111.05800 * 161.12947 * 17 16 14 20 20 C 1.54324 * 102.89950 * 153.64778 * 19 17 16 21 21 N 1.47445 * 107.37083 * 337.89612 * 20 19 17 22 22 C 1.47839 * 108.56459 * 358.92986 * 21 20 19 23 23 C 1.46924 * 118.73856 * 53.86186 * 13 12 11 24 24 C 1.53044 * 109.45969 * 295.06652 * 10 9 7 25 25 H 0.96999 * 120.00193 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47074 * 59.99262 * 9 7 2 27 27 H 1.09007 * 109.46847 * 300.00006 * 9 7 2 28 28 H 1.08996 * 109.46152 * 55.02308 * 10 9 7 29 29 H 1.09000 * 109.49795 * 61.43615 * 11 10 9 30 30 H 1.08995 * 109.49809 * 301.33451 * 11 10 9 31 31 H 1.08997 * 109.58257 * 185.57359 * 12 11 10 32 32 H 1.08998 * 109.69993 * 65.22046 * 12 11 10 33 33 H 0.96997 * 120.00294 * 355.01103 * 16 14 13 34 34 H 1.09001 * 110.67752 * 35.35083 * 19 17 16 35 35 H 1.09000 * 110.84833 * 272.03095 * 19 17 16 36 36 H 1.09002 * 109.88743 * 218.41026 * 20 19 17 37 37 H 1.08997 * 109.88903 * 97.38625 * 20 19 17 38 38 H 1.00901 * 110.99536 * 121.19917 * 21 20 19 39 39 H 1.09008 * 110.37185 * 142.92685 * 22 21 20 40 40 H 1.09007 * 110.37408 * 265.26118 * 22 21 20 41 41 H 1.08995 * 109.58991 * 65.92512 * 23 13 12 42 42 H 1.08999 * 109.58781 * 186.35191 * 23 13 12 43 43 H 1.08999 * 109.49524 * 298.56591 * 24 10 9 44 44 H 1.09002 * 109.49572 * 58.66582 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4841 -4.9836 0.1276 12 6 2.4846 -6.1432 0.1633 13 7 3.3515 -6.0565 -1.0197 14 6 3.4940 -7.1120 -1.8455 15 8 2.8307 -8.1156 -1.6693 16 7 4.3719 -7.0551 -2.8665 17 6 4.6069 -8.2387 -3.6973 18 1 3.6814 -8.7924 -3.8552 19 6 5.2570 -7.8486 -5.0538 20 6 6.0221 -9.1290 -5.4499 21 7 6.2572 -9.9009 -4.2158 22 6 5.6970 -9.1462 -3.0747 23 6 4.0649 -4.7991 -1.2820 24 6 3.0424 -3.6528 -1.3047 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.9285 -3.5548 0.8444 29 1 0.8190 -5.1032 -0.7277 30 1 0.8984 -4.9800 1.0468 31 1 1.9461 -7.0908 0.1531 32 1 3.0912 -6.0774 1.0665 33 1 4.8481 -6.2305 -3.0513 34 1 5.9449 -7.0130 -4.9247 35 1 4.4944 -7.6104 -5.7952 36 1 6.9747 -8.8646 -5.9090 37 1 5.4252 -9.7169 -6.1470 38 1 5.8443 -10.8193 -4.2797 39 1 5.2538 -9.8286 -2.3493 40 1 6.4712 -8.5406 -2.6034 41 1 4.7975 -4.6234 -0.4944 42 1 4.5695 -4.8596 -2.2463 43 1 2.3627 -3.7849 -2.1464 44 1 3.5659 -2.7019 -1.4048 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335488622.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:08 Heat of formation + Delta-G solvation = -36.956112 kcal Electronic energy + Delta-G solvation = -22510.879573 eV Core-core repulsion = 19269.328488 eV Total energy + Delta-G solvation = -3241.551085 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44817 -38.74091 -37.24197 -34.31425 -33.83815 -32.09034 -30.72745 -29.79919 -28.55664 -27.57768 -24.58641 -22.93577 -22.27439 -21.62526 -21.19143 -20.06780 -19.21648 -17.89846 -16.94051 -16.65069 -16.27880 -15.45943 -15.03527 -14.58174 -14.29862 -13.97753 -13.78390 -13.69203 -13.38457 -13.25286 -13.00581 -12.77786 -12.50409 -12.20097 -11.86864 -11.76617 -11.64912 -11.20476 -11.12260 -11.00366 -10.84552 -10.69512 -10.49504 -10.14979 -9.99994 -9.66127 -9.44319 -9.27959 -8.99470 -8.71561 -8.37514 -8.24445 -6.01867 -4.04241 2.66786 3.24757 3.29914 3.35452 3.36654 3.79137 4.02053 4.26650 4.42939 4.52992 4.71997 4.93865 5.06147 5.09730 5.28161 5.32242 5.33696 5.45766 5.47220 5.51409 5.59661 5.65945 5.67125 5.72437 5.85069 5.98918 6.08755 6.32927 6.34672 6.38698 6.48989 6.52780 6.63456 6.94308 6.97743 6.99207 7.06086 7.09437 7.64729 7.79647 7.97637 7.98881 8.39841 8.64958 9.02190 9.59585 11.09336 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028893 B = 0.003299 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.866982 B = 8485.266295 C = 9097.955222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.080 4.080 11 C -0.130 4.130 12 C 0.130 3.870 13 N -0.621 5.621 14 C 0.708 3.292 15 O -0.599 6.599 16 N -0.739 5.739 17 C 0.134 3.866 18 H 0.094 0.906 19 C -0.149 4.149 20 C 0.049 3.951 21 N -0.683 5.683 22 C 0.036 3.964 23 C 0.109 3.891 24 C -0.118 4.118 25 H 0.261 0.739 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.397 0.603 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.341 0.659 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.346 -15.691 -8.054 20.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.098 4.098 11 C -0.168 4.168 12 C 0.007 3.993 13 N -0.358 5.358 14 C 0.410 3.590 15 O -0.478 6.478 16 N -0.397 5.397 17 C 0.026 3.974 18 H 0.112 0.888 19 C -0.188 4.188 20 C -0.080 4.080 21 N -0.312 5.312 22 C -0.095 4.095 23 C -0.014 4.014 24 C -0.156 4.156 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.235 0.765 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.156 0.844 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.391 -16.096 -7.817 21.212 hybrid contribution -0.320 1.438 -0.268 1.497 sum 11.071 -14.658 -8.085 20.070 Atomic orbital electron populations 1.69952 1.06064 1.26672 1.50773 1.25026 0.94799 0.99179 0.95452 0.86706 0.79610 0.83399 0.78550 1.20298 1.21365 1.20285 1.21200 0.92868 0.90984 1.50536 0.92663 1.19118 0.93610 0.90992 0.97202 1.21175 0.97961 0.94730 0.95967 1.22042 0.97691 0.94864 1.02230 1.21555 0.92030 1.00284 0.85437 1.47346 1.49300 1.12026 1.27115 1.15824 0.80172 0.83441 0.79562 1.90872 1.49633 1.32268 1.75009 1.45136 1.46509 1.14774 1.33286 1.22414 0.98895 0.86819 0.89283 0.88841 1.23084 1.00008 0.99111 0.96613 1.22563 0.99683 0.93338 0.92444 1.61731 1.60935 1.05730 1.02794 1.23307 0.95717 0.96838 0.93614 1.21895 0.95179 0.84207 1.00084 1.21975 0.97467 0.96954 0.99220 0.92968 0.96683 0.96570 0.92330 0.92098 0.91107 0.89605 0.92014 0.76546 0.90286 0.90096 0.90350 0.92508 0.84379 0.90805 0.90224 0.91454 0.91599 0.92308 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -13.88 8.39 -34.44 -0.29 -14.17 16 8 H 0.06 1.42 7.05 -52.49 -0.37 1.05 16 9 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16 10 C -0.08 -1.52 2.10 -90.58 -0.19 -1.71 16 11 C -0.13 -2.19 5.36 -26.61 -0.14 -2.34 16 12 C 0.13 1.96 6.44 -3.71 -0.02 1.93 16 13 N -0.62 -9.12 2.97 -178.24 -0.53 -9.65 16 14 C 0.71 10.77 8.29 -86.92 -0.72 10.05 16 15 O -0.60 -11.05 15.47 5.29 0.08 -10.97 16 16 N -0.74 -8.52 5.14 -56.46 -0.29 -8.81 16 17 C 0.13 1.36 3.35 -65.65 -0.22 1.14 16 18 H 0.09 1.12 7.66 -51.93 -0.40 0.72 16 19 C -0.15 -1.13 6.60 -24.76 -0.16 -1.29 16 20 C 0.05 0.35 7.57 -2.83 -0.02 0.33 16 21 N -0.68 -5.75 7.39 -110.78 -0.82 -6.57 16 22 C 0.04 0.35 7.27 -2.30 -0.02 0.34 16 23 C 0.11 1.44 6.42 -3.49 -0.02 1.42 16 24 C -0.12 -1.99 5.21 -26.38 -0.14 -2.12 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.40 3.84 6.01 -40.82 -0.25 3.59 16 34 H 0.08 0.56 8.00 -51.93 -0.42 0.14 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.34 2.43 8.91 -39.29 -0.35 2.08 16 39 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.70 5.64 -51.93 -0.29 0.40 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.49 6.91 -51.93 -0.36 1.13 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -31.59 343.35 -10.26 -41.85 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.42 Total: 3.07 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -2.17 Total: -4.39 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.90 Total: -50.78 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.59 -10.26 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335488622.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.894 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds