Wall clock time and date at job start Tue Mar 31 2020 05:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99619 * 2 1 4 4 H 1.48501 * 109.47150 * 270.00151 * 3 2 1 5 5 H 1.48500 * 109.47544 * 30.00399 * 3 2 1 6 6 H 1.48504 * 109.47083 * 149.99865 * 3 2 1 7 7 C 1.37878 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00333 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99614 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47201 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00451 * 180.02562 * 10 9 7 12 12 O 1.21587 * 119.99813 * 354.91867 * 11 10 9 13 13 N 1.34774 * 120.00236 * 174.91528 * 11 10 9 14 14 C 1.47079 * 120.88088 * 184.71463 * 13 11 10 15 15 C 1.53696 * 108.27573 * 128.75853 * 14 13 11 16 16 N 1.46904 * 109.25732 * 54.08083 * 15 14 13 17 17 C 1.46895 * 111.00178 * 172.60582 * 16 15 14 18 18 C 1.54270 * 110.03099 * 61.47325 * 17 16 15 19 19 C 1.54893 * 104.19373 * 217.10379 * 18 17 16 20 20 C 1.54891 * 102.74744 * 37.94389 * 19 18 17 21 21 C 1.53879 * 110.03447 * 304.30442 * 17 16 15 22 22 C 1.46895 * 111.27048 * 296.76064 * 16 15 14 23 23 C 1.47080 * 120.88114 * 4.99789 * 13 11 10 24 24 H 0.97001 * 120.00161 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47376 * 60.00228 * 9 7 2 26 26 H 1.09003 * 109.47388 * 300.00085 * 9 7 2 27 27 H 0.97001 * 119.99582 * 359.97438 * 10 9 7 28 28 H 1.09005 * 109.63440 * 248.52395 * 14 13 11 29 29 H 1.08998 * 109.63218 * 9.10625 * 14 13 11 30 30 H 1.08998 * 109.64937 * 294.08263 * 15 14 13 31 31 H 1.09002 * 109.44533 * 173.96257 * 15 14 13 32 32 H 1.08999 * 110.01895 * 182.91084 * 17 16 15 33 33 H 1.09002 * 110.48155 * 335.77910 * 18 17 16 34 34 H 1.08992 * 110.48772 * 98.42433 * 18 17 16 35 35 H 1.08994 * 110.75777 * 279.62245 * 19 18 17 36 36 H 1.09002 * 110.75326 * 156.25466 * 19 18 17 37 37 H 1.09005 * 110.47907 * 203.37728 * 20 19 18 38 38 H 1.08995 * 110.48716 * 80.73676 * 20 19 18 39 39 H 1.09000 * 110.03197 * 238.56667 * 21 17 16 40 40 H 1.08994 * 110.03075 * 359.95292 * 21 17 16 41 41 H 1.09000 * 109.49087 * 303.14198 * 22 16 15 42 42 H 1.09000 * 109.49483 * 183.06169 * 22 16 15 43 43 H 1.08994 * 109.62963 * 350.89984 * 23 13 11 44 44 H 1.09002 * 109.62844 * 111.47138 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0022 11 6 5.3251 -2.8214 -0.0024 12 8 6.1144 -1.9012 -0.0949 13 7 5.7752 -4.0876 0.1000 14 6 7.2146 -4.3708 0.2054 15 6 7.4373 -5.2917 1.4156 16 7 6.5793 -6.4772 1.2868 17 6 6.8866 -7.4653 2.3293 18 6 6.6242 -6.8609 3.7242 19 6 7.7551 -7.4418 4.6088 20 6 8.9732 -7.4388 3.6520 21 6 8.3802 -7.8328 2.2834 22 6 5.1570 -6.1108 1.3115 23 6 4.8405 -5.2231 0.1032 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6803 0.8889 26 1 3.8746 -0.6799 -0.8911 27 1 3.3697 -3.3124 -0.0021 28 1 7.5580 -4.8657 -0.7031 29 1 7.7618 -3.4389 0.3472 30 1 7.1860 -4.7589 2.3327 31 1 8.4821 -5.6007 1.4491 32 1 6.2779 -8.3584 2.1881 33 1 6.6893 -5.7734 3.6870 34 1 5.6491 -7.1730 4.0979 35 1 7.5151 -8.4567 4.9255 36 1 7.9394 -6.8004 5.4707 37 1 9.7122 -8.1729 3.9731 38 1 9.4176 -6.4448 3.6033 39 1 8.4962 -8.9044 2.1208 40 1 8.8768 -7.2786 1.4871 41 1 4.9375 -5.5666 2.2301 42 1 4.5480 -7.0138 1.2689 43 1 3.8173 -4.8549 0.1773 44 1 4.9599 -5.7983 -0.8150 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335770045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:19 Heat of formation + Delta-G solvation = -17.962735 kcal Electronic energy + Delta-G solvation = -22845.128758 eV Core-core repulsion = 19604.401287 eV Total energy + Delta-G solvation = -3240.727470 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.37713 -39.08584 -36.56603 -34.35914 -33.62660 -32.34881 -31.11369 -29.05518 -28.80878 -27.55501 -25.40929 -23.80020 -22.35958 -21.55170 -20.73923 -19.76128 -18.99954 -17.98706 -16.64192 -16.28583 -16.01829 -15.59359 -15.20780 -14.87713 -14.79128 -14.43477 -14.07514 -13.81220 -13.46968 -13.16812 -13.03827 -12.61337 -12.31124 -12.15686 -11.90183 -11.72370 -11.52714 -11.39065 -11.31662 -11.18357 -10.98136 -10.94469 -10.77292 -10.72557 -10.69993 -9.94873 -9.50262 -9.43723 -8.76616 -8.66544 -8.32206 -7.90731 -6.19495 -4.21212 3.08781 3.29388 3.36081 3.44836 3.65286 3.82805 4.29447 4.35642 4.38835 4.51114 4.63842 4.86089 4.99722 5.00559 5.12197 5.16227 5.19291 5.22848 5.28130 5.31470 5.37487 5.43043 5.44091 5.57906 5.61971 5.68326 5.77381 5.81833 5.87307 5.93278 5.96917 6.04840 6.12502 6.63791 6.81859 6.89959 6.94098 7.13984 7.27885 7.42309 7.54862 8.27621 8.68459 8.81239 9.21444 9.42340 10.92481 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030148 B = 0.003516 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.528248 B = 7960.574560 C = 8144.521405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.238 3.762 10 N -0.723 5.723 11 C 0.699 3.301 12 O -0.602 6.602 13 N -0.638 5.638 14 C 0.137 3.863 15 C 0.035 3.965 16 N -0.529 5.529 17 C 0.081 3.919 18 C -0.161 4.161 19 C -0.121 4.121 20 C -0.127 4.127 21 C -0.122 4.122 22 C 0.041 3.959 23 C 0.117 3.883 24 H 0.267 0.733 25 H 0.021 0.979 26 H 0.019 0.981 27 H 0.391 0.609 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.248 -18.256 6.145 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.115 3.885 10 N -0.378 5.378 11 C 0.400 3.600 12 O -0.482 6.482 13 N -0.378 5.378 14 C 0.013 3.987 15 C -0.094 4.094 16 N -0.252 5.252 17 C -0.027 4.027 18 C -0.200 4.200 19 C -0.159 4.159 20 C -0.164 4.164 21 C -0.159 4.159 22 C -0.088 4.088 23 C -0.007 4.007 24 H 0.077 0.923 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.227 0.773 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.707 -17.610 5.612 24.255 hybrid contribution -0.308 0.806 0.825 1.193 sum 15.399 -16.804 6.437 23.684 Atomic orbital electron populations 1.69882 1.06202 1.27400 1.49613 1.24779 0.94782 0.99157 0.93888 0.86806 0.80562 0.83170 0.79088 1.19815 1.20959 1.18489 1.21083 0.88557 0.95153 1.53152 0.90373 1.19358 0.94813 0.77734 0.96589 1.45552 1.03786 1.11006 1.77411 1.16026 0.83615 0.82206 0.78113 1.90844 1.55487 1.42969 1.58906 1.47310 1.06905 1.04426 1.79149 1.21533 0.80957 0.99083 0.97092 1.22704 0.98049 0.90750 0.97850 1.62205 1.04214 1.12263 1.46563 1.22410 0.96802 0.95033 0.88470 1.23092 0.99048 1.01293 0.96614 1.22422 0.94988 1.00837 0.97686 1.22396 0.97527 1.01444 0.95078 1.22275 0.94546 1.01452 0.97672 1.22460 0.89119 0.99237 0.97946 1.21666 0.93443 0.87373 0.98210 0.92288 0.96089 0.96287 0.77321 0.91547 0.88831 0.94017 0.89448 0.89708 0.91057 0.91626 0.91513 0.91774 0.91690 0.91704 0.91459 0.90423 0.93937 0.89759 0.89682 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.96 55.43 0.77 -25.92 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.54 -15.07 9.83 -34.44 -0.34 -15.41 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 9 C 0.24 6.04 4.50 -5.20 -0.02 6.02 16 10 N -0.72 -15.51 5.46 -66.42 -0.36 -15.87 16 11 C 0.70 14.48 8.31 -86.92 -0.72 13.76 16 12 O -0.60 -14.68 15.83 5.29 0.08 -14.59 16 13 N -0.64 -10.06 3.00 -177.91 -0.53 -10.60 16 14 C 0.14 1.84 6.61 -3.36 -0.02 1.82 16 15 C 0.03 0.38 4.91 -3.46 -0.02 0.36 16 16 N -0.53 -5.37 4.63 -224.71 -1.04 -6.41 16 17 C 0.08 0.69 3.05 -66.59 -0.20 0.49 16 18 C -0.16 -1.40 5.19 -25.07 -0.13 -1.53 16 19 C -0.12 -0.90 6.91 -24.74 -0.17 -1.07 16 20 C -0.13 -0.89 6.83 -25.07 -0.17 -1.06 16 21 C -0.12 -0.91 5.86 -25.61 -0.15 -1.06 16 22 C 0.04 0.44 5.24 -3.70 -0.02 0.42 16 23 C 0.12 1.46 6.59 -3.60 -0.02 1.44 16 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 26 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 27 H 0.39 7.43 5.82 -40.82 -0.24 7.20 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 1.40 7.09 -51.93 -0.37 1.03 16 30 H 0.04 0.51 6.30 -51.93 -0.33 0.19 16 31 H 0.09 0.81 5.86 -51.93 -0.30 0.51 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.74 5.72 -51.93 -0.30 0.45 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.62 6.10 -51.93 -0.32 0.30 16 41 H 0.04 0.51 7.34 -51.93 -0.38 0.13 16 42 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 43 H 0.09 1.07 5.63 -51.93 -0.29 0.78 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 332.56 15.07 5.01 5.01 Total: -1.00 -32.34 332.56 -9.92 -42.27 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.10 Total: 2.73 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -2.09 Total: 6.30 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -1.16 Total: -58.80 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.08 Total: -14.59 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.34 -9.92 -42.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335770045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.303 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds