Wall clock time and date at job start Tue Mar 31 2020 06:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48660 * 110.99900 * 2 1 4 4 C 1.55254 * 103.41940 * 201.06527 * 3 2 1 5 5 C 1.53231 * 102.53907 * 36.25100 * 4 3 2 6 6 C 1.53729 * 111.50530 * 101.21374 * 5 4 3 7 7 C 1.54578 * 102.78404 * 86.14995 * 6 5 4 8 8 N 1.47136 * 107.33043 * 20.90002 * 7 6 5 9 9 C 1.34774 * 125.60813 * 180.93579 * 8 7 6 10 10 O 1.21583 * 119.99919 * 180.02562 * 9 8 7 11 11 N 1.34774 * 119.99868 * 0.02768 * 9 8 7 12 12 C 1.46506 * 120.00072 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.47242 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99967 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00542 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99408 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47216 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47057 * 120.00167 * 18 16 14 21 21 H 1.48497 * 109.47025 * 240.00141 * 18 16 14 22 22 C 1.47701 * 108.78211 * 1.20207 * 8 7 6 23 23 C 1.48296 * 110.99978 * 242.53122 * 2 1 3 24 24 H 1.08996 * 109.47138 * 177.46701 * 1 2 3 25 25 H 1.08999 * 109.47180 * 297.46863 * 1 2 3 26 26 H 1.08998 * 109.47161 * 57.47188 * 1 2 3 27 27 H 1.09001 * 110.63420 * 319.55540 * 3 2 1 28 28 H 1.09002 * 110.63145 * 82.58655 * 3 2 1 29 29 H 1.08996 * 110.79944 * 277.98704 * 4 3 2 30 30 H 1.08995 * 110.79378 * 154.50788 * 4 3 2 31 31 H 1.09003 * 110.74540 * 327.82417 * 6 5 4 32 32 H 1.08999 * 110.74829 * 204.47194 * 6 5 4 33 33 H 1.08997 * 109.87484 * 261.46464 * 7 6 5 34 34 H 1.08999 * 109.86960 * 140.33948 * 7 6 5 35 35 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 37 37 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 38 38 H 1.09001 * 109.46832 * 299.99854 * 13 12 11 39 39 H 1.08996 * 109.46952 * 59.99873 * 13 12 11 40 40 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 41 41 H 1.09003 * 110.38932 * 95.91712 * 22 8 7 42 42 H 1.09005 * 110.39081 * 218.29976 * 22 8 7 43 43 H 1.09000 * 110.05241 * 26.32746 * 23 2 1 44 44 H 1.08998 * 110.09579 * 264.87188 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0017 1.3879 0.0000 4 6 3.4465 1.2192 -0.5428 5 6 3.2827 0.1080 -1.5851 6 6 3.2360 0.6768 -3.0126 7 6 4.7314 0.7699 -3.3927 8 7 5.4663 -0.1489 -2.5092 9 6 6.8000 -0.3431 -2.5136 10 8 7.3022 -1.1311 -1.7358 11 7 7.5770 0.3363 -3.3803 12 6 9.0268 0.1256 -3.3848 13 6 9.6677 1.0121 -4.4545 14 6 11.1589 0.7949 -4.4596 15 1 11.6050 0.0950 -3.7686 16 6 11.9538 1.4898 -5.3462 17 7 11.4106 2.3426 -6.1873 18 14 13.8024 1.2211 -5.3520 19 1 14.1601 0.2184 -4.3167 20 1 14.2266 0.7269 -6.6865 21 1 14.4900 2.5040 -5.0577 22 6 4.5013 -0.8282 -1.6209 23 6 2.0005 -0.6386 -1.2284 24 1 -0.3633 -1.0266 -0.0454 25 1 -0.3633 0.4740 0.9118 26 1 -0.3633 0.5526 -0.8664 27 1 1.4146 2.0247 -0.6617 28 1 2.0165 1.7936 1.0116 29 1 4.1245 0.9077 0.2517 30 1 3.7941 2.1403 -1.0106 31 1 2.7734 1.6637 -3.0200 32 1 2.7090 -0.0031 -3.6820 33 1 5.0882 1.7894 -3.2463 34 1 4.8685 0.4731 -4.4325 35 1 7.1764 0.9647 -4.0012 36 1 9.4345 0.3837 -2.4074 37 1 9.2413 -0.9206 -3.6031 38 1 9.2600 0.7543 -5.4320 39 1 9.4532 2.0581 -4.2358 40 1 11.9699 2.8317 -6.8109 41 1 4.2255 -1.7994 -2.0318 42 1 4.9208 -0.9430 -0.6214 43 1 1.2776 -0.5483 -2.0392 44 1 2.2201 -1.6893 -1.0392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335801954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:42 Heat of formation + Delta-G solvation = -27.583426 kcal Electronic energy + Delta-G solvation = -22241.117626 eV Core-core repulsion = 18999.972972 eV Total energy + Delta-G solvation = -3241.144655 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78089 -39.06545 -36.66113 -34.76479 -32.97407 -32.38914 -30.30518 -29.67013 -29.27438 -26.77272 -25.02803 -23.93832 -23.09448 -21.52248 -20.97379 -19.70491 -19.56901 -17.73827 -16.41109 -16.28013 -15.91522 -15.57597 -15.27387 -14.70980 -14.52146 -14.34202 -14.03134 -13.68507 -13.36047 -13.34807 -13.09639 -12.83989 -12.35628 -12.24281 -12.09450 -12.04528 -11.81182 -11.62453 -11.19632 -11.09693 -11.03286 -10.87410 -10.76017 -10.59636 -10.30470 -9.88989 -9.53804 -9.22788 -8.79836 -8.67580 -8.44244 -8.14584 -6.07996 -4.10304 2.89764 3.29639 3.37170 3.42911 3.59729 3.65015 4.05838 4.16459 4.28452 4.39337 4.57223 4.65035 4.84101 4.88891 4.99477 5.02227 5.06693 5.24518 5.29261 5.35963 5.41821 5.46113 5.49518 5.54470 5.59415 5.62805 5.74581 5.80875 5.91610 5.94314 6.20614 6.42610 6.45099 6.49269 6.64185 6.79736 7.04093 7.33194 7.58727 7.65149 7.91592 8.27552 8.42257 8.94820 9.03082 9.54400 11.03807 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.047401 B = 0.002761 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.561796 B =10136.985865 C =10328.348872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.523 5.523 3 C 0.034 3.966 4 C -0.107 4.107 5 C -0.085 4.085 6 C -0.117 4.117 7 C 0.101 3.899 8 N -0.642 5.642 9 C 0.717 3.283 10 O -0.595 6.595 11 N -0.736 5.736 12 C 0.140 3.860 13 C 0.013 3.987 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.145 3.855 23 C 0.052 3.948 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.027 0.973 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.392 0.608 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.261 0.739 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.052 0.948 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.201 -1.103 7.863 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.094 4.094 4 C -0.145 4.145 5 C -0.086 4.086 6 C -0.155 4.155 7 C -0.023 4.023 8 N -0.382 5.382 9 C 0.419 3.581 10 O -0.474 6.474 11 N -0.390 5.390 12 C 0.017 3.983 13 C -0.024 4.024 14 C -0.558 4.558 15 H 0.079 0.921 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.021 3.979 23 C -0.076 4.076 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.226 0.774 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.486 -1.871 8.761 25.137 hybrid contribution 0.442 0.748 -1.264 1.534 sum -23.044 -1.122 7.498 24.259 Atomic orbital electron populations 1.22515 0.87879 1.02048 1.00864 1.64869 1.08029 1.15124 1.36621 1.23350 0.95127 0.89676 1.01202 1.22380 0.96422 0.97858 0.97822 1.21665 0.95072 0.96281 0.95592 1.22592 0.95587 1.01983 0.95327 1.22001 0.91590 0.94151 0.94531 1.47648 1.04559 1.45903 1.40104 1.15577 0.79302 0.81439 0.81827 1.90892 1.72441 1.40398 1.43635 1.45544 1.09029 1.45682 1.38724 1.21601 0.75162 1.00583 1.00937 1.19323 0.95657 0.94573 0.92886 1.21096 0.91426 1.24208 1.19021 0.92142 1.25002 0.99051 0.95014 0.95307 1.69969 1.35519 1.26522 1.21401 0.86451 0.85069 0.78077 0.77945 1.19555 1.20960 1.20952 1.21915 0.86609 0.94201 0.95172 1.22696 0.94288 0.99544 0.91087 0.91285 0.91271 0.95429 0.93680 0.89925 0.90103 0.90537 0.90024 0.90333 0.91557 0.91484 0.77445 0.92775 0.92774 0.96015 0.96008 0.92943 0.91830 0.90121 0.93015 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.40 60.07 0.56 0.67 16 2 N -0.52 -4.35 5.57 -238.94 -1.33 -5.68 16 3 C 0.03 0.26 6.59 -1.65 -0.01 0.25 16 4 C -0.11 -0.94 6.11 -25.42 -0.16 -1.10 16 5 C -0.08 -0.74 0.75 -153.84 -0.12 -0.86 16 6 C -0.12 -0.90 5.65 -25.52 -0.14 -1.05 16 7 C 0.10 1.04 6.09 -2.87 -0.02 1.03 16 8 N -0.64 -9.04 3.34 -176.51 -0.59 -9.63 16 9 C 0.72 13.47 8.49 -86.92 -0.74 12.73 16 10 O -0.60 -13.53 16.62 5.29 0.09 -13.44 16 11 N -0.74 -13.82 5.52 -65.22 -0.36 -14.18 16 12 C 0.14 3.11 5.61 -4.04 -0.02 3.08 16 13 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 14 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 15 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.31 13.29 55.43 0.74 -25.58 16 18 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.14 1.72 5.75 -3.01 -0.02 1.71 16 23 C 0.05 0.41 6.06 -3.25 -0.02 0.39 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.16 8.01 -51.93 -0.42 -0.25 16 27 H 0.04 0.31 7.95 -51.93 -0.41 -0.10 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.83 7.66 -51.93 -0.40 0.43 16 30 H 0.08 0.65 7.79 -51.93 -0.40 0.25 16 31 H 0.08 0.53 7.95 -51.93 -0.41 0.12 16 32 H 0.08 0.54 7.91 -51.93 -0.41 0.13 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.39 6.47 7.46 -40.82 -0.30 6.16 16 36 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.06 0.73 7.90 -51.93 -0.41 0.32 16 42 H 0.08 1.09 7.64 -51.93 -0.40 0.70 16 43 H 0.05 0.36 7.23 -51.93 -0.38 -0.02 16 44 H 0.09 0.69 7.61 -51.93 -0.40 0.29 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -32.80 349.78 -10.12 -42.92 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.68 Total: 0.08 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -1.23 Total: 3.69 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -1.54 Total: -55.06 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.80 -10.12 -42.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335801954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.336 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds