Wall clock time and date at job start Tue Mar 31 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46227 * 110.93204 * 2 1 4 4 C 1.47548 * 114.33553 * 148.52954 * 3 2 1 5 5 C 1.54945 * 109.73080 * 62.21053 * 4 3 2 6 6 N 1.44677 * 109.52978 * 290.52374 * 5 4 3 7 7 C 1.34775 * 118.54702 * 269.05352 * 6 5 4 8 8 O 1.21582 * 120.00349 * 355.21573 * 7 6 5 9 9 N 1.34776 * 119.99717 * 175.21638 * 7 6 5 10 10 C 1.46504 * 119.99770 * 185.07908 * 9 7 6 11 11 C 1.53006 * 109.46909 * 185.00029 * 10 9 7 12 12 C 1.50695 * 115.55439 * 275.26833 * 11 10 9 13 13 H 1.07997 * 120.00140 * 116.58905 * 12 11 10 14 14 C 1.37881 * 119.99881 * 296.59428 * 12 11 10 15 15 N 1.31509 * 119.99844 * 352.77898 * 14 12 11 16 16 Si 1.86801 * 119.99893 * 172.77690 * 14 12 11 17 17 H 1.48495 * 109.47039 * 89.99714 * 16 14 12 18 18 H 1.48500 * 109.46897 * 209.99972 * 16 14 12 19 19 H 1.48498 * 109.46942 * 329.99988 * 16 14 12 20 20 C 1.53009 * 117.49531 * 129.55846 * 11 10 9 21 21 C 1.53003 * 117.49444 * 60.94072 * 11 10 9 22 22 C 1.47778 * 122.90304 * 89.08062 * 6 5 4 23 23 C 1.44760 * 111.00162 * 236.52818 * 2 1 3 24 24 H 1.09007 * 109.47115 * 179.51745 * 1 2 3 25 25 H 1.08997 * 109.47450 * 299.51558 * 1 2 3 26 26 H 1.09006 * 109.47136 * 59.51977 * 1 2 3 27 27 H 1.09005 * 108.52736 * 27.27866 * 3 2 1 28 28 H 1.08994 * 108.51871 * 269.78785 * 3 2 1 29 29 H 1.09003 * 109.42783 * 302.12934 * 4 3 2 30 30 H 1.08996 * 109.38142 * 182.26499 * 4 3 2 31 31 H 1.09000 * 109.46269 * 170.50487 * 5 4 3 32 32 H 1.09008 * 109.46028 * 50.53825 * 5 4 3 33 33 H 0.97003 * 120.00225 * 5.07120 * 9 7 6 34 34 H 1.08999 * 109.46944 * 305.00129 * 10 9 7 35 35 H 1.08993 * 109.47328 * 65.00337 * 10 9 7 36 36 H 0.97001 * 120.00206 * 185.01075 * 15 14 12 37 37 H 1.08993 * 117.49506 * 0.02562 * 20 11 10 38 38 H 1.08996 * 117.49740 * 145.02106 * 20 11 10 39 39 H 1.09003 * 117.49936 * 214.97761 * 21 11 10 40 40 H 1.09004 * 117.50362 * 359.97285 * 21 11 10 41 41 H 1.09003 * 109.06792 * 197.57990 * 22 6 5 42 42 H 1.08998 * 109.06940 * 78.64219 * 22 6 5 43 43 H 1.09003 * 109.43033 * 97.79929 * 23 2 1 44 44 H 1.08991 * 109.43848 * 337.88309 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9914 1.3658 0.0000 4 6 3.2795 1.5240 0.7018 5 6 4.3672 0.6754 -0.0035 6 7 4.0965 -0.7301 0.2075 7 6 4.6477 -1.3387 1.2762 8 8 5.4236 -0.7316 1.9886 9 7 4.3386 -2.6206 1.5553 10 6 4.8490 -3.2478 2.7769 11 6 4.4595 -4.7274 2.7916 12 6 3.0847 -5.0323 3.3281 13 1 2.3391 -5.4738 2.6835 14 6 2.7786 -4.7475 4.6420 15 7 3.7221 -4.3436 5.4642 16 14 1.0237 -4.9353 5.2540 17 1 0.8230 -6.3147 5.7659 18 1 0.7734 -3.9606 6.3461 19 1 0.0798 -4.6798 4.1365 20 6 5.5672 -5.7469 3.0650 21 6 4.9861 -5.6078 1.6564 22 6 3.2429 -1.5278 -0.6973 23 6 1.9878 -0.7454 -1.1273 24 1 -0.3634 -1.0277 -0.0087 25 1 -0.3634 0.5063 0.8943 26 1 -0.3634 0.5213 -0.8857 27 1 1.2571 2.0175 0.4737 28 1 2.1186 1.6877 -1.0335 29 1 3.1731 1.1914 1.7344 30 1 3.5727 2.5737 0.6875 31 1 5.3453 0.9228 0.4092 32 1 4.3592 0.8903 -1.0722 33 1 3.7782 -3.1278 0.9473 34 1 5.9349 -3.1577 2.8052 35 1 4.4204 -2.7507 3.6470 36 1 3.5229 -4.2131 6.4045 37 1 6.5732 -5.3634 3.2348 38 1 5.3016 -6.6383 3.6333 39 1 4.3384 -6.4078 1.2980 40 1 5.6098 -5.1329 0.8990 41 1 2.9358 -2.4397 -0.1852 42 1 3.8168 -1.7954 -1.5845 43 1 2.2479 -0.0549 -1.9297 44 1 1.2288 -1.4431 -1.4810 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335825991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:25 Heat of formation + Delta-G solvation = 18.215214 kcal Electronic energy + Delta-G solvation = -23496.877285 eV Core-core repulsion = 20257.718608 eV Total energy + Delta-G solvation = -3239.158677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.06239 -38.20573 -36.68199 -34.60408 -33.66836 -32.32102 -31.98456 -29.05547 -26.89801 -25.69452 -24.94516 -24.55837 -21.98982 -21.13989 -20.66209 -19.26458 -18.84464 -17.73723 -16.52978 -15.92834 -15.63000 -15.28083 -14.90467 -14.57444 -14.37764 -13.86089 -13.73258 -13.57046 -13.27619 -13.00950 -12.76457 -12.49775 -12.28534 -11.86778 -11.61132 -11.41916 -11.34729 -11.14036 -10.94381 -10.84782 -10.80328 -10.70054 -10.48119 -10.24919 -9.58531 -9.32879 -8.97553 -8.55416 -8.37346 -8.30278 -8.14572 -7.76574 -6.02226 -4.08442 3.22860 3.29922 3.38041 3.40023 3.84738 3.94073 4.40332 4.56632 4.81355 4.87324 4.94016 5.09233 5.18899 5.22709 5.34090 5.41575 5.46313 5.50464 5.56877 5.63111 5.78301 5.81146 5.83190 5.88536 6.07883 6.13001 6.37852 6.40577 6.55534 6.67573 6.78113 6.88779 7.01917 7.08774 7.09889 7.15480 7.38873 7.48928 7.60883 7.67206 7.90780 8.41213 8.73005 8.91044 9.36182 9.55899 11.05538 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.005830 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.788739 B = 4801.249464 C = 5590.580999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.534 5.534 3 C 0.065 3.935 4 C -0.138 4.138 5 C 0.140 3.860 6 N -0.618 5.618 7 C 0.701 3.299 8 O -0.603 6.603 9 N -0.726 5.726 10 C 0.181 3.819 11 C 0.037 3.963 12 C -0.497 4.497 13 H 0.060 0.940 14 C 0.073 3.927 15 N -0.874 5.874 16 Si 0.890 3.110 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.168 4.168 21 C -0.209 4.209 22 C 0.119 3.881 23 C 0.045 3.955 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.021 0.979 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.392 0.608 34 H 0.036 0.964 35 H 0.078 0.922 36 H 0.262 0.738 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.061 0.939 43 H 0.043 0.957 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 8.715 -14.302 17.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.258 5.258 3 C -0.062 4.062 4 C -0.178 4.178 5 C 0.016 3.984 6 N -0.356 5.356 7 C 0.402 3.598 8 O -0.483 6.483 9 N -0.381 5.381 10 C 0.058 3.942 11 C 0.036 3.964 12 C -0.535 4.535 13 H 0.078 0.922 14 C -0.131 4.131 15 N -0.510 5.510 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.206 4.206 21 C -0.246 4.246 22 C -0.006 4.006 23 C -0.084 4.084 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.228 0.772 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.505 9.047 -13.143 16.336 hybrid contribution -1.584 -0.039 -0.541 1.674 sum -5.089 9.008 -13.684 17.155 Atomic orbital electron populations 1.22455 0.86823 1.02240 1.00263 1.60760 1.07413 1.14316 1.43274 1.20973 0.97514 0.88795 0.98954 1.21425 0.94838 0.99630 1.01860 1.21127 0.98880 0.79776 0.98666 1.46676 1.51749 1.09653 1.27500 1.16009 0.80819 0.82182 0.80778 1.90845 1.39898 1.65894 1.51640 1.45490 1.54844 1.10925 1.26824 1.20843 0.95579 0.92973 0.84844 1.19094 0.94285 0.87319 0.95699 1.20409 0.95100 1.42064 0.95911 0.92234 1.24969 0.96880 0.94347 0.96890 1.69956 1.32263 1.44943 1.03851 0.86623 0.85259 0.77709 0.78624 1.20776 1.21164 1.19805 1.22725 0.97514 1.03456 0.96906 1.22869 1.05154 1.04908 0.91691 1.21924 0.90520 0.94543 0.93573 1.22377 0.97040 0.97687 0.91325 0.91111 0.91409 0.96060 0.92079 0.95114 0.90487 0.90825 0.89769 0.92038 0.77202 0.94530 0.90358 0.92804 0.91641 0.90081 0.90509 0.91492 0.89895 0.92134 0.93851 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.17 60.06 0.55 0.86 16 2 N -0.53 -6.61 4.41 -247.95 -1.09 -7.70 16 3 C 0.07 0.73 4.96 -6.82 -0.03 0.70 16 4 C -0.14 -1.76 6.02 -28.34 -0.17 -1.93 16 5 C 0.14 1.91 5.48 -3.99 -0.02 1.88 16 6 N -0.62 -9.74 2.53 -177.94 -0.45 -10.19 16 7 C 0.70 14.41 8.21 -86.92 -0.71 13.70 16 8 O -0.60 -14.64 15.69 5.29 0.08 -14.56 16 9 N -0.73 -15.12 5.33 -65.22 -0.35 -15.46 16 10 C 0.18 4.40 5.51 -4.04 -0.02 4.38 16 11 C 0.04 0.89 1.35 -155.65 -0.21 0.68 16 12 C -0.50 -13.17 8.84 -34.44 -0.30 -13.48 16 13 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 14 C 0.07 1.99 5.22 -17.82 -0.09 1.90 16 15 N -0.87 -24.89 12.42 55.43 0.69 -24.20 16 16 Si 0.89 21.06 29.55 -169.99 -5.02 16.04 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C -0.17 -3.87 9.88 -26.72 -0.26 -4.13 16 21 C -0.21 -4.36 9.77 -26.73 -0.26 -4.63 16 22 C 0.12 1.49 6.42 -2.80 -0.02 1.47 16 23 C 0.05 0.48 5.53 -4.43 -0.02 0.46 16 24 H 0.07 0.73 7.96 -51.93 -0.41 0.31 16 25 H 0.07 0.71 8.04 -51.93 -0.42 0.30 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.06 0.64 7.61 -51.93 -0.40 0.25 16 28 H 0.03 0.30 7.18 -51.93 -0.37 -0.07 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.28 7.18 -51.93 -0.37 0.91 16 32 H 0.06 0.67 8.10 -51.92 -0.42 0.25 16 33 H 0.39 7.38 5.75 -40.82 -0.23 7.14 16 34 H 0.04 0.91 7.86 -51.93 -0.41 0.50 16 35 H 0.08 2.21 7.08 -51.93 -0.37 1.84 16 36 H 0.26 7.17 8.32 -40.82 -0.34 6.83 16 37 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 38 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 39 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.13 5.55 -51.93 -0.29 0.84 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.04 0.41 7.14 -51.93 -0.37 0.04 16 44 H 0.08 0.72 7.52 -51.93 -0.39 0.33 16 LS Contribution 345.76 15.07 5.21 5.21 Total: -1.00 -31.39 345.76 -9.90 -41.28 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -7.38 Total: 7.72 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -1.59 Total: 1.86 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -1.20 Total: -57.56 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.08 Total: -14.56 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.39 -9.90 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335825991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.497 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds