Wall clock time and date at job start Tue Mar 31 2020 05:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00064 * 2 1 4 4 H 1.48497 * 109.47408 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46935 * 299.99669 * 3 2 1 6 6 H 1.48497 * 109.47160 * 59.99480 * 3 2 1 7 7 C 1.37879 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99726 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99923 * 0.02562 * 7 2 1 10 10 N 1.46509 * 109.47014 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99795 * 180.02562 * 10 9 7 12 12 O 1.21578 * 120.00186 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99572 * 179.97438 * 11 10 9 14 14 C 1.47024 * 125.64847 * 359.68614 * 13 11 10 15 15 C 1.54327 * 107.26851 * 181.32598 * 14 13 11 16 16 C 1.55154 * 102.94372 * 22.19158 * 15 14 13 17 17 H 1.08998 * 111.03378 * 82.58540 * 16 15 14 18 18 N 1.46902 * 111.00555 * 206.42365 * 16 15 14 19 19 C 1.46842 * 110.99784 * 297.85910 * 18 16 15 20 20 C 1.53039 * 109.52193 * 174.16160 * 19 18 16 21 21 C 1.53113 * 109.28096 * 59.17998 * 20 19 18 22 22 C 1.53123 * 109.16027 * 302.35023 * 21 20 19 23 23 C 1.46849 * 110.99916 * 173.65228 * 18 16 15 24 24 C 1.47426 * 125.64645 * 179.97438 * 13 11 10 25 25 H 0.96999 * 120.00324 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47855 * 59.99624 * 9 7 2 27 27 H 1.08995 * 109.46982 * 299.98901 * 9 7 2 28 28 H 0.97004 * 119.99661 * 359.97438 * 10 9 7 29 29 H 1.08997 * 109.88062 * 300.74548 * 14 13 11 30 30 H 1.09000 * 109.88248 * 61.90735 * 14 13 11 31 31 H 1.09005 * 110.71834 * 263.82776 * 15 14 13 32 32 H 1.08999 * 110.71553 * 140.55738 * 15 14 13 33 33 H 1.09002 * 109.46908 * 294.17838 * 19 18 16 34 34 H 1.08998 * 109.46153 * 54.14897 * 19 18 16 35 35 H 1.09000 * 109.50040 * 299.23526 * 20 19 18 36 36 H 1.08997 * 109.50444 * 179.12577 * 20 19 18 37 37 H 1.09001 * 109.52713 * 182.44347 * 21 20 19 38 38 H 1.08997 * 109.52398 * 62.24876 * 21 20 19 39 39 H 1.09002 * 109.50039 * 297.70882 * 22 21 20 40 40 H 1.09000 * 109.53800 * 177.61597 * 22 21 20 41 41 H 1.09003 * 109.46139 * 305.85678 * 23 18 16 42 42 H 1.08994 * 109.46577 * 65.82175 * 23 18 16 43 43 H 1.09004 * 110.36499 * 274.44757 * 24 13 11 44 44 H 1.08998 * 110.36482 * 36.65820 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5585 -5.1055 0.0000 13 7 2.6297 -5.9077 -0.0005 14 6 4.0946 -5.7826 -0.0071 15 6 4.6763 -7.2117 -0.0392 16 6 3.5070 -8.0499 -0.6199 17 1 3.4857 -7.9906 -1.7081 18 7 3.5879 -9.4470 -0.1731 19 6 4.8231 -10.0815 -0.6505 20 6 4.9438 -11.4832 -0.0482 21 6 3.7275 -12.3170 -0.4600 22 6 2.4521 -11.6099 0.0067 23 6 2.4035 -10.2046 -0.5972 24 6 2.2775 -7.3393 -0.0006 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 3.1568 -3.4353 0.0002 29 1 4.4155 -5.2317 -0.8912 30 1 4.4267 -5.2673 0.8941 31 1 4.9295 -7.5476 0.9664 32 1 5.5469 -7.2590 -0.6934 33 1 4.7972 -10.1544 -1.7378 34 1 5.6805 -9.4808 -0.3473 35 1 4.9838 -11.4099 1.0386 36 1 5.8529 -11.9598 -0.4149 37 1 3.7878 -13.3022 0.0023 38 1 3.7090 -12.4230 -1.5447 39 1 2.4527 -11.5387 1.0944 40 1 1.5804 -12.1768 -0.3203 41 1 1.5037 -9.6932 -0.2553 42 1 2.3889 -10.2769 -1.6846 43 1 2.1103 -7.6889 1.0183 44 1 1.3906 -7.5117 -0.6103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335882703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:49 Heat of formation + Delta-G solvation = -33.973922 kcal Electronic energy + Delta-G solvation = -22313.712187 eV Core-core repulsion = 19072.290419 eV Total energy + Delta-G solvation = -3241.421767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11328 -38.88891 -36.84887 -34.11753 -33.47558 -32.21746 -31.28899 -30.15133 -28.49012 -26.85455 -24.42656 -23.64076 -22.83418 -21.85256 -20.54164 -19.97333 -19.23834 -18.01137 -16.90650 -16.07644 -15.40278 -15.28144 -15.03389 -14.71972 -14.57697 -14.48714 -14.00514 -13.70279 -13.41056 -13.31030 -12.86246 -12.71192 -12.62326 -12.43548 -11.94557 -11.67053 -11.61917 -11.47921 -11.21142 -11.16026 -10.90338 -10.88742 -10.86658 -10.56404 -10.50483 -10.27615 -9.38126 -9.32501 -8.70894 -8.58459 -8.33890 -7.68851 -6.13059 -4.19362 3.08109 3.25591 3.32651 3.35981 3.70233 3.96032 4.26492 4.35336 4.50258 4.62170 4.64334 4.65099 4.91607 4.96691 5.02557 5.15426 5.17738 5.23057 5.25717 5.32819 5.37768 5.42618 5.59066 5.60974 5.64408 5.69364 5.71773 5.84012 5.88877 5.91470 5.97926 6.00764 6.11512 6.52431 6.84433 6.89067 7.23643 7.54975 7.60330 7.62022 7.92207 8.06017 8.79299 8.94371 9.36030 9.51118 10.97332 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.046221 B = 0.002914 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.633764 B = 9606.914393 C =10111.589118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.726 5.726 11 C 0.712 3.288 12 O -0.598 6.598 13 N -0.645 5.645 14 C 0.103 3.897 15 C -0.119 4.119 16 C 0.068 3.932 17 H 0.057 0.943 18 N -0.526 5.526 19 C 0.055 3.945 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.117 4.117 23 C 0.051 3.949 24 C 0.139 3.861 25 H 0.265 0.735 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.386 0.614 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.033 0.967 43 H 0.070 0.930 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.372 -22.793 -1.244 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.378 5.378 11 C 0.414 3.586 12 O -0.477 6.477 13 N -0.386 5.386 14 C -0.021 4.021 15 C -0.157 4.157 16 C -0.042 4.042 17 H 0.075 0.925 18 N -0.251 5.251 19 C -0.073 4.073 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.154 4.154 23 C -0.077 4.077 24 C 0.015 3.985 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.219 0.781 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.051 0.949 43 H 0.089 0.911 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.234 -22.693 -0.733 25.332 hybrid contribution 0.893 1.049 -0.941 1.669 sum 12.127 -21.644 -1.674 24.866 Atomic orbital electron populations 1.69987 1.06088 1.27133 1.49088 1.24948 0.94913 0.99397 0.94810 0.86358 0.79803 0.82990 0.77721 1.19667 1.20825 1.20806 1.21254 0.93273 0.90404 1.52912 0.91941 1.18998 0.87800 0.81047 0.97627 1.45723 1.10845 1.04167 1.77088 1.15667 0.84186 0.80406 0.78385 1.90870 1.13769 1.83834 1.59192 1.47523 1.05427 1.05306 1.80351 1.21902 0.81244 0.97269 1.01670 1.22655 0.97048 0.93470 1.02544 1.22790 0.96321 0.87661 0.97386 0.92530 1.61909 1.02357 1.00809 1.60057 1.22088 0.92602 0.95478 0.97095 1.21582 0.97737 0.94391 1.01713 1.21586 0.95057 0.98654 1.00674 1.21583 0.97516 0.94702 1.01637 1.22151 0.93463 0.94468 0.97604 1.21850 0.96200 0.79469 1.01025 0.92527 0.95749 0.95695 0.78132 0.91799 0.91486 0.89504 0.90489 0.95032 0.90466 0.91003 0.91684 0.91911 0.92415 0.90961 0.91549 0.90157 0.94871 0.91143 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.27 7.34 5.43 -5.19 -0.03 7.32 16 10 N -0.73 -16.43 5.51 -66.41 -0.37 -16.80 16 11 C 0.71 15.80 8.49 -86.91 -0.74 15.06 16 12 O -0.60 -15.78 16.59 5.30 0.09 -15.69 16 13 N -0.64 -10.80 3.33 -176.22 -0.59 -11.39 16 14 C 0.10 1.28 6.15 -3.06 -0.02 1.26 16 15 C -0.12 -1.14 5.35 -24.90 -0.13 -1.27 16 16 C 0.07 0.73 2.71 -65.56 -0.18 0.55 16 17 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 18 N -0.53 -5.02 4.55 -224.12 -1.02 -6.04 16 19 C 0.06 0.44 5.32 -3.84 -0.02 0.41 16 20 C -0.12 -0.79 6.09 -26.65 -0.16 -0.96 16 21 C -0.12 -0.82 6.00 -26.61 -0.16 -0.98 16 22 C -0.12 -0.89 6.09 -26.65 -0.16 -1.05 16 23 C 0.05 0.47 5.31 -3.84 -0.02 0.45 16 24 C 0.14 1.97 5.32 -2.52 -0.01 1.96 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.39 7.60 7.31 -40.82 -0.30 7.30 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.59 7.97 -51.93 -0.41 0.18 16 33 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.56 6.93 -51.93 -0.36 0.20 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.80 6.85 -51.93 -0.36 0.44 16 42 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.12 7.76 -51.93 -0.40 0.71 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -32.97 345.96 -10.71 -43.68 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.71 Total: 1.58 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -2.05 Total: 9.12 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -1.24 Total: -59.98 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.09 Total: -15.69 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.97 -10.71 -43.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335882703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.705 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds