Wall clock time and date at job start Tue Mar 31 2020 06:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46856 * 111.00203 * 2 1 4 4 C 1.53018 * 109.64221 * 174.17573 * 3 2 1 5 5 C 1.53162 * 109.33619 * 58.90202 * 4 3 2 6 6 C 1.53055 * 109.04806 * 302.56748 * 5 4 3 7 7 H 1.08998 * 109.45414 * 298.30486 * 6 5 4 8 8 C 1.53028 * 109.66246 * 178.22497 * 6 5 4 9 9 N 1.46911 * 108.94985 * 294.22013 * 8 6 5 10 10 C 1.34779 * 120.67953 * 126.55261 * 9 8 6 11 11 O 1.21582 * 119.99920 * 354.78320 * 10 9 8 12 12 N 1.34782 * 119.99616 * 174.77821 * 10 9 8 13 13 C 1.46493 * 119.99547 * 184.98430 * 12 10 9 14 14 C 1.50705 * 109.47230 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99700 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00336 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99644 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47350 * 60.00374 * 18 16 14 20 20 H 1.48506 * 109.46855 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47538 * 300.00189 * 18 16 14 22 22 C 1.46945 * 118.63973 * 306.52627 * 9 8 6 23 23 C 1.53160 * 108.69862 * 53.87288 * 22 9 8 24 24 C 1.47026 * 110.99872 * 236.01203 * 2 1 3 25 25 H 1.08998 * 109.87734 * 306.39273 * 24 2 1 26 26 H 1.09002 * 109.47244 * 183.99140 * 1 2 3 27 27 H 1.09005 * 109.47151 * 303.98661 * 1 2 3 28 28 H 1.08999 * 109.47515 * 63.98871 * 1 2 3 29 29 H 1.09001 * 109.44172 * 54.11981 * 3 2 1 30 30 H 1.09006 * 109.44270 * 294.22268 * 3 2 1 31 31 H 1.08996 * 109.49541 * 298.93792 * 4 3 2 32 32 H 1.09005 * 109.49086 * 178.85715 * 4 3 2 33 33 H 1.09000 * 109.54137 * 62.43202 * 5 4 3 34 34 H 1.09000 * 109.54408 * 182.69814 * 5 4 3 35 35 H 1.09001 * 109.55920 * 54.06382 * 8 6 5 36 36 H 1.08998 * 109.56139 * 174.27267 * 8 6 5 37 37 H 0.96997 * 120.00560 * 4.98271 * 12 10 9 38 38 H 1.09007 * 109.47313 * 300.00084 * 13 12 10 39 39 H 1.09002 * 109.47661 * 59.99963 * 13 12 10 40 40 H 0.97001 * 120.00156 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.59845 * 173.63822 * 22 9 8 42 42 H 1.08996 * 109.60378 * 294.11044 * 22 9 8 43 43 H 1.09010 * 109.48102 * 65.02148 * 23 22 9 44 44 H 1.08997 * 109.48271 * 185.05042 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3373 0.1462 5 6 4.1211 0.5354 -1.0110 6 6 3.5179 -0.8713 -1.0116 7 1 3.7700 -1.3748 -0.0784 8 6 4.0781 -1.6712 -2.1897 9 7 3.6140 -1.0622 -3.4436 10 6 4.4923 -0.7100 -4.4033 11 8 5.6870 -0.8069 -4.1993 12 7 4.0461 -0.2503 -5.5891 13 6 4.9946 0.0291 -6.6701 14 6 4.2458 0.5286 -7.8788 15 1 3.1710 0.6283 -7.8450 16 6 4.9331 0.8592 -9.0274 17 7 6.2420 0.7382 -9.0685 18 14 4.0048 1.4776 -10.5258 19 1 3.2720 2.7209 -10.1759 20 1 4.9663 1.7609 -11.6216 21 1 3.0383 0.4421 -10.9716 22 6 2.1726 -0.8456 -3.6301 23 6 1.6384 -0.0441 -2.4393 24 6 1.9958 -0.7673 -1.1381 25 1 1.5608 -1.7667 -1.1444 26 1 -0.3634 -1.0252 0.0715 27 1 -0.3634 0.5745 0.8521 28 1 -0.3634 0.4507 -0.9235 29 1 1.5629 1.9256 0.8328 30 1 1.7316 1.8609 -0.9374 31 1 3.7823 0.8654 1.0925 32 1 3.9080 2.3551 0.1256 33 1 3.8932 1.0302 -1.9551 34 1 5.2016 0.4686 -0.8842 35 1 5.1675 -1.6544 -2.1571 36 1 3.7273 -2.7015 -2.1310 37 1 3.0971 -0.1045 -5.7269 38 1 5.7045 0.7890 -6.3432 39 1 5.5322 -0.8837 -6.9269 40 1 6.7255 0.9705 -9.8767 41 1 2.0029 -0.2885 -4.5515 42 1 1.6621 -1.8072 -3.6822 43 1 2.0878 0.9490 -2.4385 44 1 0.5552 0.0471 -2.5191 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336363974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:41 Heat of formation + Delta-G solvation = -22.799500 kcal Electronic energy + Delta-G solvation = -23388.115525 eV Core-core repulsion = 20147.178317 eV Total energy + Delta-G solvation = -3240.937208 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79487 -38.84871 -35.76990 -34.31108 -33.71268 -32.35905 -31.25759 -30.55584 -27.28867 -26.72149 -25.26292 -23.59448 -22.66784 -22.48185 -21.41582 -19.57904 -18.45226 -17.65544 -16.18496 -15.98507 -15.91567 -15.51229 -15.10048 -14.60142 -14.49343 -14.34207 -13.90218 -13.53126 -13.22860 -13.10300 -12.93386 -12.73795 -12.58445 -12.17755 -12.09711 -11.83876 -11.72786 -11.40762 -11.25831 -10.96369 -10.92266 -10.85639 -10.52498 -10.46310 -10.27296 -10.13006 -9.37419 -9.31033 -8.71312 -8.43964 -8.33324 -7.69536 -6.14101 -4.20778 3.22150 3.25952 3.31161 3.33414 3.70543 3.95295 4.31883 4.47692 4.61676 4.71850 4.83462 4.89036 5.01861 5.04426 5.13300 5.18592 5.21804 5.27800 5.34062 5.41877 5.51193 5.60638 5.64660 5.69630 5.78038 5.79630 5.80949 5.89662 5.96239 6.03256 6.10693 6.24859 6.44712 6.82896 6.89569 6.91083 7.17609 7.53369 7.56582 7.59434 7.88572 8.04066 8.77297 8.92904 9.34820 9.49750 10.96129 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026389 B = 0.003952 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.799111 B = 7083.469502 C = 7466.909235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.536 5.536 3 C 0.050 3.950 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.091 4.091 7 H 0.085 0.915 8 C 0.135 3.865 9 N -0.636 5.636 10 C 0.698 3.302 11 O -0.598 6.598 12 N -0.731 5.731 13 C 0.267 3.733 14 C -0.542 4.542 15 H 0.060 0.940 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.903 3.097 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.119 3.881 23 C -0.171 4.171 24 C 0.092 3.908 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.385 0.615 38 H 0.025 0.975 39 H 0.023 0.977 40 H 0.266 0.734 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.347 -1.629 18.253 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.259 5.259 3 C -0.077 4.077 4 C -0.153 4.153 5 C -0.152 4.152 6 C -0.111 4.111 7 H 0.104 0.896 8 C 0.011 3.989 9 N -0.375 5.375 10 C 0.399 3.601 11 O -0.477 6.477 12 N -0.385 5.385 13 C 0.146 3.854 14 C -0.581 4.581 15 H 0.079 0.921 16 C -0.139 4.139 17 N -0.523 5.523 18 Si 0.730 3.270 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.201 1.201 22 C -0.005 4.005 23 C -0.211 4.211 24 C -0.016 4.016 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.219 0.781 38 H 0.043 0.957 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.105 -1.896 18.656 21.793 hybrid contribution -1.332 0.872 -1.704 2.332 sum -12.437 -1.025 16.952 21.050 Atomic orbital electron populations 1.22378 0.87687 1.02132 1.00466 1.62265 1.07332 1.13945 1.42318 1.22133 0.95920 0.89255 1.00426 1.21581 0.94133 1.00200 0.99400 1.21602 1.00030 0.94981 0.98579 1.21516 0.93713 0.97068 0.98804 0.89642 1.21340 1.01356 0.94697 0.81503 1.47260 1.05504 1.66954 1.17808 1.16045 0.84820 0.78594 0.80628 1.90853 1.14066 1.62069 1.80687 1.45882 1.11398 1.68733 1.12444 1.18965 0.87901 0.96441 0.82118 1.21177 0.93706 1.45876 0.97301 0.92148 1.24932 0.94892 0.95318 0.98790 1.69968 1.06456 1.47133 1.28704 0.86486 0.79410 0.79255 0.81798 1.20120 1.21050 1.20097 1.21429 0.81609 0.99528 0.97967 1.22663 1.00923 1.01196 0.96334 1.21715 0.95333 0.97110 0.87462 0.89884 0.91436 0.91642 0.95305 0.91184 0.94371 0.91344 0.91690 0.91556 0.91578 0.88620 0.92242 0.78075 0.95740 0.95856 0.92408 0.90156 0.91797 0.90569 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.33 60.06 0.56 0.73 16 2 N -0.54 -5.17 4.87 -234.70 -1.14 -6.31 16 3 C 0.05 0.49 5.15 -3.84 -0.02 0.47 16 4 C -0.12 -1.17 6.09 -26.64 -0.16 -1.34 16 5 C -0.11 -1.41 4.90 -26.62 -0.13 -1.54 16 6 C -0.09 -1.03 2.59 -90.53 -0.23 -1.26 16 7 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 8 C 0.14 1.82 5.83 -3.80 -0.02 1.80 16 9 N -0.64 -9.96 2.42 -178.62 -0.43 -10.39 16 10 C 0.70 14.77 8.30 -86.91 -0.72 14.05 16 11 O -0.60 -15.09 15.77 5.29 0.08 -15.01 16 12 N -0.73 -16.08 5.46 -66.41 -0.36 -16.44 16 13 C 0.27 7.26 5.43 -5.20 -0.03 7.23 16 14 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 15 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 16 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 18 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 C 0.12 1.46 6.39 -3.72 -0.02 1.44 16 23 C -0.17 -1.81 4.31 -26.60 -0.11 -1.93 16 24 C 0.09 0.94 2.23 -67.55 -0.15 0.78 16 25 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 28 H 0.03 0.23 6.45 -51.93 -0.34 -0.11 16 29 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.04 0.39 6.14 -51.93 -0.32 0.08 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.97 6.07 -51.93 -0.32 0.66 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.50 7.00 -51.93 -0.36 1.14 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.38 7.36 5.81 -40.82 -0.24 7.12 16 38 H 0.02 0.74 8.14 -51.92 -0.42 0.32 16 39 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.08 1.02 5.65 -51.93 -0.29 0.73 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.93 4.70 -51.92 -0.24 0.68 16 44 H 0.07 0.65 6.52 -51.93 -0.34 0.32 16 LS Contribution 329.79 15.07 4.97 4.97 Total: -1.00 -32.07 329.79 -9.68 -41.75 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.05 Total: 4.16 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -1.46 Total: 6.93 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -1.20 Total: -58.73 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.08 Total: -15.01 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.07 -9.68 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336363974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.950 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds