Wall clock time and date at job start Tue Mar 31 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46862 * 111.00229 * 2 1 4 4 C 1.53011 * 109.63803 * 185.83004 * 3 2 1 5 5 C 1.53157 * 109.35106 * 301.11988 * 4 3 2 6 6 C 1.53062 * 109.05769 * 57.40938 * 5 4 3 7 7 H 1.09003 * 109.46295 * 61.73232 * 6 5 4 8 8 C 1.53033 * 109.64079 * 181.81984 * 6 5 4 9 9 N 1.46919 * 108.93414 * 65.63789 * 8 6 5 10 10 C 1.34779 * 120.68456 * 233.47199 * 9 8 6 11 11 O 1.21584 * 119.99859 * 5.21631 * 10 9 8 12 12 N 1.34768 * 120.00049 * 185.21650 * 10 9 8 13 13 C 1.46496 * 120.00162 * 175.01522 * 12 10 9 14 14 C 1.50699 * 109.47404 * 179.97438 * 13 12 10 15 15 H 1.08010 * 119.99796 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00571 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99645 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00466 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47553 * 179.97438 * 18 16 14 20 20 H 1.48497 * 109.47144 * 300.00245 * 18 16 14 21 21 H 1.48500 * 109.47052 * 59.99977 * 18 16 14 22 22 C 1.46940 * 118.62787 * 53.75189 * 9 8 6 23 23 C 1.53588 * 108.48072 * 305.84136 * 22 9 8 24 24 C 1.47027 * 111.00591 * 123.93285 * 2 1 3 25 25 H 1.09009 * 109.55248 * 53.72184 * 24 2 1 26 26 H 1.09003 * 109.47114 * 63.94895 * 1 2 3 27 27 H 1.08997 * 109.47302 * 183.94785 * 1 2 3 28 28 H 1.08995 * 109.47168 * 303.95455 * 1 2 3 29 29 H 1.09001 * 109.44004 * 65.78576 * 3 2 1 30 30 H 1.08998 * 109.44588 * 305.88898 * 3 2 1 31 31 H 1.09002 * 109.49372 * 181.16012 * 4 3 2 32 32 H 1.09005 * 109.51080 * 61.09632 * 4 3 2 33 33 H 1.08995 * 109.53824 * 297.53371 * 5 4 3 34 34 H 1.09004 * 109.53935 * 177.28493 * 5 4 3 35 35 H 1.08999 * 109.56020 * 305.80729 * 8 6 5 36 36 H 1.08991 * 109.65447 * 185.53130 * 8 6 5 37 37 H 0.97004 * 120.00334 * 355.01662 * 12 10 9 38 38 H 1.08999 * 109.47039 * 60.00006 * 13 12 10 39 39 H 1.08999 * 109.47135 * 299.99661 * 13 12 10 40 40 H 0.97002 * 119.99732 * 0.02562 * 17 16 14 41 41 H 1.09005 * 109.59992 * 65.65828 * 22 9 8 42 42 H 1.09001 * 109.59134 * 186.11418 * 22 9 8 43 43 H 1.09004 * 109.61498 * 295.13238 * 23 22 9 44 44 H 1.09004 * 109.41487 * 175.05522 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3711 0.0000 4 6 3.5180 1.3373 -0.1464 5 6 4.1214 0.5349 1.0103 6 6 3.5179 -0.8717 1.0110 7 1 3.7699 -1.3756 0.0779 8 6 4.0781 -1.6712 2.1896 9 7 3.6166 -1.0593 3.4430 10 6 4.4965 -0.7067 4.4011 11 8 5.6908 -0.8058 4.1958 12 7 4.0526 -0.2443 5.5866 13 6 5.0027 0.0356 6.6659 14 6 4.2562 0.5384 7.8746 15 1 3.1813 0.6390 7.8422 16 6 4.9451 0.8690 9.0223 17 7 6.2539 0.7461 9.0619 18 14 4.0197 1.4915 10.5207 19 1 4.9827 1.7742 11.6152 20 1 3.2893 2.7359 10.1697 21 1 3.0512 0.4588 10.9686 22 6 2.1753 -0.8455 3.6331 23 6 1.6409 -0.0405 2.4393 24 6 1.9960 -0.7662 1.1388 25 1 1.5593 -1.7650 1.1399 26 1 -0.3633 0.4513 -0.9233 27 1 -0.3634 -1.0252 0.0708 28 1 -0.3633 0.5740 0.8524 29 1 1.7317 1.8608 0.9374 30 1 1.5629 1.9258 -0.8327 31 1 3.9081 2.3549 -0.1254 32 1 3.7824 0.8659 -1.0930 33 1 3.8943 1.0296 1.9546 34 1 5.2019 0.4680 0.8829 35 1 5.1675 -1.6562 2.1557 36 1 3.7254 -2.7010 2.1347 37 1 3.1039 -0.0968 5.7252 38 1 5.7133 0.7938 6.3369 39 1 5.5391 -0.8776 6.9237 40 1 6.7345 0.4232 8.2837 41 1 1.6666 -1.8081 3.6856 42 1 2.0068 -0.2897 4.5556 43 1 2.0912 0.9522 2.4363 44 1 0.5578 0.0517 2.5201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336363975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:43 Heat of formation + Delta-G solvation = -26.993327 kcal Electronic energy + Delta-G solvation = -23426.634195 eV Core-core repulsion = 20185.515129 eV Total energy + Delta-G solvation = -3241.119066 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84859 -38.94945 -35.85576 -34.50405 -33.80799 -32.47292 -31.28512 -30.58979 -26.94546 -26.75193 -25.14703 -23.65025 -22.74611 -22.54803 -21.53173 -19.68289 -18.55224 -17.76995 -16.62073 -16.17290 -15.95394 -15.58185 -15.01994 -14.63780 -14.43784 -14.05061 -13.82061 -13.66585 -13.35599 -13.16396 -12.97962 -12.82404 -12.61343 -12.24043 -12.18972 -12.04649 -11.90063 -11.48985 -11.29929 -11.03389 -10.88497 -10.78339 -10.57033 -10.50864 -10.18034 -10.15927 -9.47420 -8.78120 -8.69147 -8.49135 -8.39867 -7.83423 -6.50463 -4.23510 3.14049 3.37670 3.39402 3.58590 3.65890 3.84742 4.38817 4.45602 4.56785 4.64794 4.76961 4.84547 4.95602 4.99509 5.09220 5.14023 5.24575 5.28638 5.29753 5.37081 5.45923 5.57226 5.60764 5.63778 5.71962 5.74467 5.75855 5.84830 5.91587 5.97464 6.05407 6.19799 6.39723 6.73004 6.85510 6.87176 6.96487 7.28001 7.36593 7.46031 7.82928 8.29378 8.62116 8.80471 9.26039 9.51121 10.89875 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026328 B = 0.003969 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.262810 B = 7053.051022 C = 7439.104175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.536 5.536 3 C 0.050 3.950 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.091 4.091 7 H 0.086 0.914 8 C 0.135 3.865 9 N -0.635 5.635 10 C 0.698 3.302 11 O -0.599 6.599 12 N -0.726 5.726 13 C 0.257 3.743 14 C -0.622 4.622 15 H 0.055 0.945 16 C 0.023 3.977 17 N -0.902 5.902 18 Si 1.076 2.924 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.287 1.287 22 C 0.119 3.881 23 C -0.170 4.170 24 C 0.092 3.908 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.387 0.613 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.273 0.727 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.881 -1.753 -18.651 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.259 5.259 3 C -0.077 4.077 4 C -0.153 4.153 5 C -0.152 4.152 6 C -0.111 4.111 7 H 0.104 0.896 8 C 0.011 3.989 9 N -0.374 5.374 10 C 0.400 3.600 11 O -0.479 6.479 12 N -0.380 5.380 13 C 0.135 3.865 14 C -0.660 4.660 15 H 0.073 0.927 16 C -0.183 4.183 17 N -0.537 5.537 18 Si 0.903 3.097 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.213 1.213 22 C -0.006 4.006 23 C -0.210 4.210 24 C -0.017 4.017 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.222 0.778 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.605 -1.522 -17.626 21.158 hybrid contribution -1.135 -0.028 -0.798 1.388 sum -12.740 -1.550 -18.423 22.453 Atomic orbital electron populations 1.22366 0.87627 1.01861 1.00719 1.62287 1.07372 1.13987 1.42206 1.22134 0.95893 0.89257 1.00463 1.21578 0.94145 1.00202 0.99382 1.21603 1.00018 0.94989 0.98593 1.21520 0.93762 0.97048 0.98761 0.89555 1.21361 1.01372 0.94714 0.81461 1.47244 1.05531 1.66780 1.17845 1.16045 0.84842 0.78539 0.80622 1.90849 1.14146 1.62181 1.80681 1.45679 1.11354 1.68673 1.12257 1.19028 0.88562 0.95445 0.83428 1.22050 0.95079 1.50016 0.98890 0.92683 1.25861 0.96362 0.94849 1.01219 1.70752 1.07308 1.42071 1.33523 0.83451 0.74834 0.76232 0.75188 1.20534 1.21337 1.21317 1.21536 0.81479 0.99590 0.97988 1.22730 1.00938 1.01107 0.96217 1.21743 0.95317 0.97099 0.87496 0.89848 0.91559 0.91450 0.95391 0.94358 0.91130 0.91673 0.91305 0.91620 0.91603 0.88637 0.92153 0.77780 0.96733 0.96865 0.91645 0.91662 0.90193 0.90537 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.16 60.06 0.55 0.73 16 2 N -0.54 -5.13 4.87 -234.70 -1.14 -6.27 16 3 C 0.05 0.48 5.15 -3.84 -0.02 0.46 16 4 C -0.12 -1.17 6.09 -26.64 -0.16 -1.33 16 5 C -0.11 -1.40 4.90 -26.62 -0.13 -1.53 16 6 C -0.09 -1.02 2.60 -90.52 -0.24 -1.25 16 7 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 8 C 0.14 1.81 5.83 -3.80 -0.02 1.79 16 9 N -0.63 -9.93 2.41 -178.35 -0.43 -10.36 16 10 C 0.70 14.77 8.30 -86.92 -0.72 14.05 16 11 O -0.60 -15.02 15.77 5.29 0.08 -14.94 16 12 N -0.73 -16.09 5.46 -66.42 -0.36 -16.45 16 13 C 0.26 6.97 4.74 -5.20 -0.02 6.95 16 14 C -0.62 -17.33 9.28 -34.44 -0.32 -17.65 16 15 H 0.05 1.45 7.60 -52.48 -0.40 1.05 16 16 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 17 N -0.90 -27.57 13.65 55.43 0.76 -26.81 16 18 Si 1.08 24.53 29.90 -169.99 -5.08 19.45 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 22 C 0.12 1.46 6.42 -3.50 -0.02 1.44 16 23 C -0.17 -1.79 4.32 -26.37 -0.11 -1.91 16 24 C 0.09 0.92 2.23 -67.54 -0.15 0.77 16 25 H 0.08 0.80 8.04 -51.92 -0.42 0.38 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.48 8.03 -51.93 -0.42 0.06 16 28 H 0.03 0.22 6.84 -51.93 -0.36 -0.14 16 29 H 0.04 0.40 6.13 -51.93 -0.32 0.08 16 30 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.96 6.05 -51.93 -0.31 0.65 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.49 7.00 -51.93 -0.36 1.12 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.39 7.55 5.81 -40.82 -0.24 7.31 16 38 H 0.01 0.44 8.01 -51.93 -0.42 0.02 16 39 H 0.01 0.39 8.01 -51.93 -0.42 -0.02 16 40 H 0.27 8.47 7.22 -40.82 -0.29 8.18 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.03 5.64 -51.93 -0.29 0.73 16 43 H 0.08 0.93 4.69 -51.93 -0.24 0.69 16 44 H 0.07 0.65 6.70 -51.93 -0.35 0.30 16 LS Contribution 328.73 15.07 4.95 4.95 Total: -1.00 -32.72 328.73 -9.70 -42.42 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.01 Total: 4.94 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.47 Total: 3.06 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -1.18 Total: -59.89 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.08 Total: -14.94 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.08 Total: 19.45 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.72 -9.70 -42.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336363975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.431 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds