Wall clock time and date at job start Tue Mar 31 2020 06:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46843 * 110.99558 * 2 1 4 4 C 1.53042 * 109.49957 * 185.89814 * 3 2 1 5 5 C 1.53110 * 109.25600 * 300.77303 * 4 3 2 6 6 C 1.53106 * 109.19423 * 57.68677 * 5 4 3 7 7 H 1.09000 * 109.57577 * 62.47978 * 6 5 4 8 8 C 1.53700 * 109.17777 * 183.04252 * 6 5 4 9 9 N 1.46918 * 108.51456 * 174.40791 * 8 6 5 10 10 C 1.34784 * 120.62991 * 126.31385 * 9 8 6 11 11 O 1.21585 * 119.99793 * 184.94543 * 10 9 8 12 12 N 1.34773 * 120.00100 * 4.94380 * 10 9 8 13 13 C 1.46494 * 120.00203 * 175.01273 * 12 10 9 14 14 C 1.50703 * 109.47623 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99027 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00503 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99696 * 359.97438 * 16 14 13 18 18 Si 1.86789 * 120.00171 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47392 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47332 * 119.99863 * 18 16 14 21 21 H 1.48497 * 109.47483 * 239.99880 * 18 16 14 22 22 C 1.46925 * 118.73820 * 306.04371 * 9 8 6 23 23 C 1.53187 * 108.77410 * 53.85275 * 22 9 8 24 24 C 1.46840 * 111.00248 * 124.25921 * 2 1 3 25 25 H 1.08998 * 109.46849 * 294.22990 * 24 2 1 26 26 H 1.09000 * 109.47442 * 295.73634 * 1 2 3 27 27 H 1.08992 * 109.47553 * 55.73933 * 1 2 3 28 28 H 1.09002 * 109.47081 * 175.73831 * 1 2 3 29 29 H 1.08997 * 109.46355 * 305.90518 * 3 2 1 30 30 H 1.09001 * 109.46665 * 65.89097 * 3 2 1 31 31 H 1.09010 * 109.50779 * 60.70569 * 4 3 2 32 32 H 1.09004 * 109.50664 * 180.83720 * 4 3 2 33 33 H 1.09007 * 109.51263 * 177.60203 * 5 4 3 34 34 H 1.08996 * 109.51573 * 297.71206 * 5 4 3 35 35 H 1.08996 * 109.75512 * 54.67734 * 8 6 5 36 36 H 1.09000 * 109.66927 * 294.08904 * 8 6 5 37 37 H 0.97000 * 119.99912 * 355.01321 * 12 10 9 38 38 H 1.09004 * 109.47201 * 59.99815 * 13 12 10 39 39 H 1.09003 * 109.47366 * 300.00299 * 13 12 10 40 40 H 0.97001 * 119.99985 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.58637 * 173.64232 * 22 9 8 42 42 H 1.09000 * 109.58136 * 294.06757 * 22 9 8 43 43 H 1.09005 * 109.49583 * 65.29961 * 23 22 9 44 44 H 1.09004 * 109.49663 * 185.39285 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3709 0.0000 4 6 3.5179 1.3337 -0.1482 5 6 4.1189 0.5369 1.0128 6 6 3.5187 -0.8716 1.0207 7 1 3.7838 -1.3867 0.0973 8 6 4.0645 -1.6463 2.2308 9 7 3.3798 -2.9442 2.3013 10 6 4.0858 -4.0912 2.3528 11 8 3.5098 -5.1615 2.3202 12 7 5.4301 -4.0517 2.4405 13 6 6.1901 -5.2930 2.6065 14 6 7.6616 -4.9755 2.6779 15 1 7.9970 -3.9514 2.6062 16 6 8.5796 -5.9923 2.8335 17 7 8.1710 -7.2394 2.9202 18 14 10.4034 -5.5988 2.9212 19 1 10.5997 -4.1317 2.8005 20 1 10.9486 -6.0652 4.2215 21 1 11.1121 -6.2863 1.8121 22 6 1.9108 -2.9678 2.3206 23 6 1.3891 -2.1772 1.1167 24 6 1.9953 -0.7717 1.1330 25 1 1.7317 -0.2732 2.0658 26 1 -0.3634 0.4462 0.9257 27 1 -0.3634 0.5785 -0.8493 28 1 -0.3633 -1.0248 -0.0764 29 1 1.5626 1.9259 -0.8324 30 1 1.7333 1.8605 0.9381 31 1 3.7802 0.8556 -1.0921 32 1 3.9100 2.3507 -0.1333 33 1 5.1999 0.4715 0.8885 34 1 3.8902 1.0364 1.9542 35 1 3.8752 -1.0831 3.1446 36 1 5.1364 -1.8046 2.1120 37 1 5.8943 -3.2013 2.3937 38 1 6.0007 -5.9512 1.7585 39 1 5.8806 -5.7882 3.5269 40 1 8.8169 -7.9548 3.0294 41 1 1.5611 -3.9984 2.2604 42 1 1.5502 -2.5107 3.2421 43 1 1.6747 -2.6860 0.1960 44 1 0.3028 -2.1057 1.1715 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336363976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:45 Heat of formation + Delta-G solvation = -27.442325 kcal Electronic energy + Delta-G solvation = -23040.919757 eV Core-core repulsion = 19799.781221 eV Total energy + Delta-G solvation = -3241.138536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.46701 -38.85692 -35.88748 -34.47775 -33.97255 -32.44771 -31.49593 -30.21668 -27.16888 -26.82605 -25.31156 -23.90345 -22.47508 -21.91446 -20.92624 -19.95699 -19.08127 -17.93890 -16.11144 -15.98319 -15.58519 -15.47447 -15.19165 -14.83665 -14.47272 -14.23321 -14.12578 -13.80667 -13.23380 -13.09467 -12.85539 -12.65121 -12.53753 -12.10612 -11.95117 -11.87475 -11.67632 -11.52124 -11.30486 -11.08111 -10.89639 -10.87472 -10.84138 -10.44623 -10.26177 -10.13884 -9.33349 -9.28465 -8.70561 -8.52403 -8.35590 -7.68290 -6.12702 -4.19018 3.21521 3.25796 3.33222 3.36487 3.62743 3.96227 4.33426 4.46426 4.53034 4.61675 4.79674 4.85181 4.99328 5.08521 5.15046 5.18630 5.22504 5.23499 5.31568 5.35943 5.47880 5.53644 5.56514 5.62171 5.66838 5.67531 5.77259 5.79044 5.97838 5.99314 6.06361 6.16968 6.34820 6.80448 6.88750 6.91748 7.18349 7.55514 7.58310 7.61335 7.89842 8.05544 8.79398 8.94295 9.36106 9.51222 10.97669 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025449 B = 0.003893 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.959068 B = 7190.900402 C = 8087.424771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.056 3.944 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.093 4.093 7 H 0.086 0.914 8 C 0.120 3.880 9 N -0.638 5.638 10 C 0.698 3.302 11 O -0.599 6.599 12 N -0.730 5.730 13 C 0.266 3.734 14 C -0.540 4.540 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.133 3.867 23 C -0.130 4.130 24 C 0.095 3.905 25 H 0.040 0.960 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.385 0.615 38 H 0.025 0.975 39 H 0.024 0.976 40 H 0.265 0.735 41 H 0.096 0.904 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.981 19.396 -4.232 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.072 4.072 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.113 4.113 7 H 0.104 0.896 8 C -0.005 4.005 9 N -0.377 5.377 10 C 0.399 3.601 11 O -0.478 6.478 12 N -0.383 5.383 13 C 0.144 3.856 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.009 3.991 23 C -0.169 4.169 24 C -0.013 4.013 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.220 0.780 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.137 18.128 -4.634 22.862 hybrid contribution 0.931 1.027 0.756 1.579 sum -12.206 19.155 -3.878 23.042 Atomic orbital electron populations 1.22413 0.87496 1.02579 1.00142 1.61890 1.07432 1.13333 1.43761 1.22086 0.95826 0.89087 1.00152 1.21569 0.94237 1.00052 0.99530 1.21605 1.00503 0.94849 0.98551 1.21690 0.93983 0.95944 0.99690 0.89557 1.21696 0.97311 0.84301 0.97169 1.47285 1.05991 1.04733 1.79711 1.16055 0.82626 0.83267 0.78141 1.90852 1.69924 1.28007 1.59006 1.45875 1.03725 1.12419 1.76330 1.18986 0.89091 0.80249 0.97224 1.21255 0.90715 0.93768 1.52116 0.91989 1.24940 0.99473 0.94778 0.94838 1.69992 1.34619 0.99136 1.48532 0.86368 0.84367 0.78459 0.77736 1.19668 1.20836 1.20811 1.21316 0.79277 1.02087 0.96438 1.22110 0.99915 0.94724 1.00144 1.21596 0.94622 0.93900 0.91229 0.94166 0.95859 0.91605 0.90742 0.90936 0.95140 0.90946 0.91485 0.91111 0.92076 0.91895 0.89784 0.78008 0.95672 0.95846 0.92544 0.88592 0.92542 0.90482 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.05 60.06 0.54 0.72 16 2 N -0.54 -5.34 4.74 -234.86 -1.11 -6.45 16 3 C 0.06 0.48 5.47 -3.83 -0.02 0.46 16 4 C -0.12 -0.96 6.09 -26.65 -0.16 -1.13 16 5 C -0.12 -1.06 5.27 -26.62 -0.14 -1.20 16 6 C -0.09 -1.04 2.34 -90.16 -0.21 -1.25 16 7 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 8 C 0.12 1.52 5.69 -3.45 -0.02 1.50 16 9 N -0.64 -10.33 2.97 -178.19 -0.53 -10.86 16 10 C 0.70 15.08 8.30 -86.91 -0.72 14.36 16 11 O -0.60 -15.39 15.77 5.29 0.08 -15.30 16 12 N -0.73 -16.23 5.46 -66.41 -0.36 -16.59 16 13 C 0.27 7.26 5.43 -5.20 -0.03 7.23 16 14 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 15 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 18 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.13 1.83 6.44 -3.71 -0.02 1.81 16 23 C -0.13 -1.48 4.98 -26.60 -0.13 -1.62 16 24 C 0.09 1.00 1.68 -67.66 -0.11 0.89 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.07 0.60 6.18 -51.93 -0.32 0.28 16 29 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.09 5.64 -51.93 -0.29 0.79 16 37 H 0.39 7.43 5.81 -40.82 -0.24 7.19 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.10 1.51 7.00 -51.93 -0.36 1.15 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.07 0.70 6.24 -51.93 -0.32 0.37 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -32.66 337.34 -9.98 -42.63 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.41 Total: 2.90 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -1.45 Total: 8.25 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -1.27 Total: -59.55 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.08 Total: -15.30 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.66 -9.98 -42.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336363976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.191 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds