Wall clock time and date at job start Tue Mar 31 2020 06:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46843 * 110.99558 * 2 1 4 4 C 1.53042 * 109.49957 * 185.89814 * 3 2 1 5 5 C 1.53110 * 109.25600 * 300.77303 * 4 3 2 6 6 C 1.53106 * 109.19423 * 57.68677 * 5 4 3 7 7 H 1.09000 * 109.57577 * 62.47978 * 6 5 4 8 8 C 1.53700 * 109.17777 * 183.04252 * 6 5 4 9 9 N 1.46918 * 108.51456 * 174.40791 * 8 6 5 10 10 C 1.34784 * 120.62991 * 126.31385 * 9 8 6 11 11 O 1.21585 * 119.99793 * 184.94543 * 10 9 8 12 12 N 1.34773 * 120.00100 * 4.94380 * 10 9 8 13 13 C 1.46494 * 120.00203 * 175.01273 * 12 10 9 14 14 C 1.50703 * 109.47623 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99027 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00503 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99696 * 359.97438 * 16 14 13 18 18 Si 1.86789 * 120.00171 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47392 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47332 * 119.99863 * 18 16 14 21 21 H 1.48497 * 109.47483 * 239.99880 * 18 16 14 22 22 C 1.46925 * 118.73820 * 306.04371 * 9 8 6 23 23 C 1.53187 * 108.77410 * 53.85275 * 22 9 8 24 24 C 1.46840 * 111.00248 * 124.25921 * 2 1 3 25 25 H 1.08998 * 109.46849 * 294.22990 * 24 2 1 26 26 H 1.09000 * 109.47442 * 295.73634 * 1 2 3 27 27 H 1.08992 * 109.47553 * 55.73933 * 1 2 3 28 28 H 1.09002 * 109.47081 * 175.73831 * 1 2 3 29 29 H 1.08997 * 109.46355 * 305.90518 * 3 2 1 30 30 H 1.09001 * 109.46665 * 65.89097 * 3 2 1 31 31 H 1.09010 * 109.50779 * 60.70569 * 4 3 2 32 32 H 1.09004 * 109.50664 * 180.83720 * 4 3 2 33 33 H 1.09007 * 109.51263 * 177.60203 * 5 4 3 34 34 H 1.08996 * 109.51573 * 297.71206 * 5 4 3 35 35 H 1.08996 * 109.75512 * 54.67734 * 8 6 5 36 36 H 1.09000 * 109.66927 * 294.08904 * 8 6 5 37 37 H 0.97000 * 119.99912 * 355.01321 * 12 10 9 38 38 H 1.09004 * 109.47201 * 59.99815 * 13 12 10 39 39 H 1.09003 * 109.47366 * 300.00299 * 13 12 10 40 40 H 0.97001 * 119.99985 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.58637 * 173.64232 * 22 9 8 42 42 H 1.09000 * 109.58136 * 294.06757 * 22 9 8 43 43 H 1.09005 * 109.49583 * 65.29961 * 23 22 9 44 44 H 1.09004 * 109.49663 * 185.39285 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3709 0.0000 4 6 3.5179 1.3337 -0.1482 5 6 4.1189 0.5369 1.0128 6 6 3.5187 -0.8716 1.0207 7 1 3.7838 -1.3867 0.0973 8 6 4.0645 -1.6463 2.2308 9 7 3.3798 -2.9442 2.3013 10 6 4.0858 -4.0912 2.3528 11 8 3.5098 -5.1615 2.3202 12 7 5.4301 -4.0517 2.4405 13 6 6.1901 -5.2930 2.6065 14 6 7.6616 -4.9755 2.6779 15 1 7.9970 -3.9514 2.6062 16 6 8.5796 -5.9923 2.8335 17 7 8.1710 -7.2394 2.9202 18 14 10.4034 -5.5988 2.9212 19 1 10.5997 -4.1317 2.8005 20 1 10.9486 -6.0652 4.2215 21 1 11.1121 -6.2863 1.8121 22 6 1.9108 -2.9678 2.3206 23 6 1.3891 -2.1772 1.1167 24 6 1.9953 -0.7717 1.1330 25 1 1.7317 -0.2732 2.0658 26 1 -0.3634 0.4462 0.9257 27 1 -0.3634 0.5785 -0.8493 28 1 -0.3633 -1.0248 -0.0764 29 1 1.5626 1.9259 -0.8324 30 1 1.7333 1.8605 0.9381 31 1 3.7802 0.8556 -1.0921 32 1 3.9100 2.3507 -0.1333 33 1 5.1999 0.4715 0.8885 34 1 3.8902 1.0364 1.9542 35 1 3.8752 -1.0831 3.1446 36 1 5.1364 -1.8046 2.1120 37 1 5.8943 -3.2013 2.3937 38 1 6.0007 -5.9512 1.7585 39 1 5.8806 -5.7882 3.5269 40 1 8.8169 -7.9548 3.0294 41 1 1.5611 -3.9984 2.2604 42 1 1.5502 -2.5107 3.2421 43 1 1.6747 -2.6860 0.1960 44 1 0.3028 -2.1057 1.1715 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336363976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:45 Heat of formation + Delta-G solvation = -50.631942 kcal Electronic energy + Delta-G solvation = -23041.925334 eV Core-core repulsion = 19799.781221 eV Total energy + Delta-G solvation = -3242.144113 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64786 -40.18716 -37.13824 -36.23329 -35.03656 -34.38225 -32.71710 -31.21915 -29.14717 -27.52773 -26.45915 -25.16977 -24.17047 -22.80471 -22.09008 -20.75139 -20.72385 -19.43935 -18.04669 -17.40238 -16.77936 -16.54395 -16.37765 -16.27539 -15.66012 -15.32224 -15.18046 -15.03228 -14.75154 -14.35544 -14.13632 -13.76941 -13.69744 -13.58181 -13.26944 -12.91514 -12.89000 -12.74161 -12.71787 -12.38261 -12.26821 -12.12183 -11.91506 -11.61042 -11.44132 -11.39323 -11.09588 -10.91988 -10.81216 -10.04677 -9.38980 -9.21930 -8.27896 -6.44587 1.43879 1.45798 1.58830 1.77359 2.18963 2.39256 2.92832 3.07101 3.15201 3.61456 3.71604 3.85133 4.06516 4.18726 4.19638 4.25223 4.35212 4.44302 4.51504 4.60628 4.62029 4.69651 4.75413 4.77899 4.80832 4.87041 4.97899 5.04714 5.08842 5.11666 5.17487 5.25924 5.27658 5.32136 5.47622 5.51100 5.57676 5.73376 5.85210 6.11154 6.17122 6.21317 6.66907 7.16909 7.25652 7.68727 8.84876 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025449 B = 0.003893 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.959068 B = 7190.900402 C = 8087.424771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.556 5.556 3 C 0.056 3.944 4 C -0.114 4.114 5 C -0.113 4.113 6 C -0.088 4.088 7 H 0.060 0.940 8 C 0.115 3.885 9 N -0.628 5.628 10 C 0.692 3.308 11 O -0.648 6.648 12 N -0.724 5.724 13 C 0.285 3.715 14 C -0.554 4.554 15 H 0.083 0.917 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.987 3.013 19 H -0.252 1.252 20 H -0.278 1.278 21 H -0.279 1.279 22 C 0.128 3.872 23 C -0.120 4.120 24 C 0.100 3.900 25 H 0.052 0.948 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.402 0.598 38 H -0.017 1.017 39 H -0.014 1.014 40 H 0.269 0.731 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.506 22.920 -4.039 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.281 5.281 3 C -0.072 4.072 4 C -0.152 4.152 5 C -0.151 4.151 6 C -0.108 4.108 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.365 5.365 10 C 0.394 3.606 11 O -0.531 6.531 12 N -0.380 5.380 13 C 0.162 3.838 14 C -0.591 4.591 15 H 0.101 0.899 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.810 3.190 19 H -0.175 1.175 20 H -0.204 1.204 21 H -0.205 1.205 22 C 0.005 3.995 23 C -0.158 4.158 24 C -0.009 4.009 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.239 0.761 38 H 0.001 0.999 39 H 0.003 0.997 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.071 0.929 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.698 21.750 -4.454 25.577 hybrid contribution 0.663 -0.049 0.669 0.943 sum -12.035 21.702 -3.785 25.102 Atomic orbital electron populations 1.22447 0.86434 1.02726 1.01043 1.61866 1.08534 1.14288 1.43367 1.22145 0.95744 0.88295 1.00971 1.21567 0.94359 1.00815 0.98446 1.21591 1.00563 0.93287 0.99641 1.21597 0.94813 0.96873 0.97481 0.92116 1.21993 0.96899 0.82655 0.99259 1.47323 1.06970 1.04372 1.77842 1.16257 0.82376 0.84164 0.77837 1.90811 1.70741 1.30510 1.61032 1.45482 1.04113 1.11536 1.76822 1.18419 0.90339 0.81475 0.93580 1.21603 0.90506 0.94917 1.52112 0.89920 1.26075 1.05302 0.94332 0.93864 1.70154 1.36813 1.00592 1.49398 0.85080 0.76957 0.79257 0.77714 1.17550 1.20352 1.20454 1.21530 0.77606 1.01424 0.98920 1.22004 1.01312 0.94878 0.97626 1.21492 0.93905 0.93299 0.92166 0.93065 0.95011 0.90599 0.91040 0.89938 0.94362 0.92291 0.89550 0.90857 0.90652 0.89252 0.90178 0.76067 0.99883 0.99650 0.92223 0.91225 0.89807 0.92899 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.05 127.69 1.16 1.45 16 2 N -0.56 -9.68 4.74 -896.97 -4.25 -13.93 16 3 C 0.06 0.77 5.47 86.33 0.47 1.25 16 4 C -0.11 -1.58 6.09 30.65 0.19 -1.40 16 5 C -0.11 -1.72 5.27 30.67 0.16 -1.56 16 6 C -0.09 -1.81 2.34 -10.49 -0.02 -1.84 16 7 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 8 C 0.11 2.73 5.69 86.54 0.49 3.22 16 9 N -0.63 -20.28 2.97 -835.94 -2.48 -22.76 16 10 C 0.69 31.05 8.30 179.05 1.49 32.53 16 11 O -0.65 -35.29 15.77 -3.98 -0.06 -35.35 16 12 N -0.72 -33.19 5.46 -482.30 -2.63 -35.83 16 13 C 0.29 16.38 5.43 85.64 0.47 16.84 16 14 C -0.55 -30.83 9.28 25.60 0.24 -30.59 16 15 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 16 C 0.00 0.21 5.46 84.65 0.46 0.67 16 17 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 18 Si 0.99 42.72 29.54 68.60 2.03 44.74 16 19 H -0.25 -10.02 7.11 99.48 0.71 -9.32 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 C 0.13 3.47 6.44 86.36 0.56 4.03 16 23 C -0.12 -2.61 4.98 30.68 0.15 -2.45 16 24 C 0.10 1.89 1.68 44.98 0.08 1.96 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 28 H 0.07 1.01 6.18 -2.39 -0.01 0.99 16 29 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 30 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.07 1.09 8.14 -2.38 -0.02 1.08 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.96 5.64 -2.39 -0.01 1.95 16 37 H 0.40 15.47 5.81 -92.71 -0.54 14.93 16 38 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 39 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.07 2.28 7.00 -2.39 -0.02 2.26 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.10 1.66 6.24 -2.38 -0.01 1.65 16 Total: -1.00 -74.21 337.34 -0.80 -75.01 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.44 Total: 20.76 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: 5.88 Total: 24.12 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -9.08 Total: -129.29 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.06 Total: -35.35 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -74.21 -0.80 -75.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336363976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.381 kcal (2) G-P(sol) polarization free energy of solvation -74.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds