Wall clock time and date at job start Tue Mar 31 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46836 * 111.00006 * 2 1 4 4 C 1.53042 * 109.50018 * 174.09951 * 3 2 1 5 5 C 1.53109 * 109.25616 * 59.22790 * 4 3 2 6 6 C 1.53116 * 109.18735 * 302.30804 * 5 4 3 7 7 H 1.08997 * 109.57717 * 297.52362 * 6 5 4 8 8 C 1.52767 * 109.31630 * 177.23354 * 6 5 4 9 9 N 1.46918 * 109.01920 * 185.89884 * 8 6 5 10 10 C 1.34784 * 120.62991 * 233.58063 * 9 8 6 11 11 O 1.21585 * 119.99532 * 184.74553 * 10 9 8 12 12 N 1.34778 * 119.99913 * 4.74540 * 10 9 8 13 13 C 1.46502 * 119.99635 * 174.92321 * 12 10 9 14 14 C 1.50706 * 109.46798 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99623 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99749 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00250 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99820 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47083 * 90.00134 * 18 16 14 20 20 H 1.48501 * 109.47386 * 209.99947 * 18 16 14 21 21 H 1.48501 * 109.47366 * 329.99905 * 18 16 14 22 22 C 1.46925 * 118.73820 * 53.31049 * 9 8 6 23 23 C 1.53195 * 108.77132 * 306.69181 * 22 9 8 24 24 C 1.46840 * 111.00249 * 235.73423 * 2 1 3 25 25 H 1.08999 * 109.47214 * 65.77269 * 24 2 1 26 26 H 1.08999 * 109.47570 * 184.26123 * 1 2 3 27 27 H 1.09000 * 109.47319 * 304.26431 * 1 2 3 28 28 H 1.08998 * 109.46728 * 64.26633 * 1 2 3 29 29 H 1.08991 * 109.46487 * 294.10318 * 3 2 1 30 30 H 1.08997 * 109.46942 * 54.09108 * 3 2 1 31 31 H 1.09006 * 109.50617 * 179.16059 * 4 3 2 32 32 H 1.09005 * 109.51161 * 299.29249 * 4 3 2 33 33 H 1.08999 * 109.51988 * 62.23376 * 5 4 3 34 34 H 1.09006 * 109.51865 * 182.34291 * 5 4 3 35 35 H 1.08998 * 109.50507 * 66.00572 * 8 6 5 36 36 H 1.09005 * 109.42015 * 305.73285 * 8 6 5 37 37 H 0.96999 * 120.00108 * 354.92381 * 12 10 9 38 38 H 1.08991 * 109.47274 * 60.00046 * 13 12 10 39 39 H 1.09006 * 109.46793 * 299.99806 * 13 12 10 40 40 H 0.96999 * 120.00165 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.58788 * 66.47467 * 22 9 8 42 42 H 1.09002 * 109.58447 * 186.90797 * 22 9 8 43 43 H 1.08998 * 109.49238 * 174.60379 * 23 22 9 44 44 H 1.08999 * 109.49879 * 294.70568 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5180 1.3335 0.1483 5 6 4.1190 0.5367 -1.0127 6 6 3.5187 -0.8719 -1.0204 7 1 3.7837 -1.3869 -0.0970 8 6 4.0643 -1.6473 -2.2182 9 7 3.3796 -2.9445 -2.3010 10 6 4.0856 -4.0915 -2.3526 11 8 3.5116 -5.1521 -2.5078 12 7 5.4277 -4.0628 -2.2321 13 6 6.1850 -5.3157 -2.1764 14 6 7.6543 -5.0088 -2.0412 15 1 7.9902 -3.9832 -2.0013 16 6 8.5696 -6.0374 -1.9696 17 7 8.1605 -7.2863 -2.0188 18 14 10.3908 -5.6571 -1.8028 19 1 10.7486 -5.5703 -0.3641 20 1 11.1828 -6.7363 -2.4456 21 1 10.6889 -4.3623 -2.4660 22 6 1.9107 -2.9680 -2.3205 23 6 1.3890 -2.1773 -1.1165 24 6 1.9953 -0.7718 -1.1329 25 1 1.7318 -0.2734 -2.0658 26 1 -0.3634 -1.0248 0.0764 27 1 -0.3634 0.5786 0.8493 28 1 -0.3633 0.4462 -0.9257 29 1 1.7336 1.8603 -0.9380 30 1 1.5627 1.9260 0.8323 31 1 3.9101 2.3505 0.1333 32 1 3.7802 0.8554 1.0922 33 1 3.8895 1.0356 -1.9543 34 1 5.2001 0.4720 -0.8890 35 1 5.1351 -1.8066 -2.0915 36 1 3.8828 -1.0794 -3.1308 37 1 5.8921 -3.2127 -2.1823 38 1 6.0148 -5.8841 -3.0906 39 1 5.8560 -5.9012 -1.3178 40 1 8.8044 -8.0100 -1.9680 41 1 1.5501 -2.5108 -3.2419 42 1 1.5610 -3.9987 -2.2601 43 1 0.3028 -2.1057 -1.1714 44 1 1.6746 -2.6860 -0.1958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336363977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:47 Heat of formation + Delta-G solvation = -27.126654 kcal Electronic energy + Delta-G solvation = -23077.294952 eV Core-core repulsion = 19836.170105 eV Total energy + Delta-G solvation = -3241.124848 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.48827 -38.85552 -35.90018 -34.49034 -33.97217 -32.44035 -31.50029 -30.23966 -27.16961 -26.82319 -25.31992 -23.89914 -22.47724 -21.90271 -20.92051 -19.96140 -19.07117 -17.95339 -16.10285 -15.98799 -15.58396 -15.48083 -15.18779 -14.83291 -14.48105 -14.23808 -14.14442 -13.76717 -13.21728 -13.13504 -12.82907 -12.67883 -12.53378 -12.09711 -11.94573 -11.84674 -11.70057 -11.51793 -11.29270 -11.06953 -10.91280 -10.86072 -10.82945 -10.45029 -10.25858 -10.13412 -9.34601 -9.28939 -8.69853 -8.51886 -8.35949 -7.68016 -6.12266 -4.18702 3.21129 3.26795 3.33157 3.35871 3.63021 3.97437 4.33423 4.46304 4.52472 4.61994 4.79956 4.86020 5.00266 5.08805 5.15075 5.19063 5.22727 5.23834 5.31636 5.36110 5.48644 5.54084 5.57519 5.62141 5.66211 5.69492 5.77622 5.79585 5.98572 5.99610 6.06495 6.16971 6.35384 6.80535 6.89165 6.92228 7.18391 7.55427 7.58404 7.61631 7.90026 8.05836 8.79419 8.94421 9.36160 9.51380 10.98053 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023725 B = 0.004005 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.925071 B = 6990.264421 C = 7888.703471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.057 3.943 4 C -0.116 4.116 5 C -0.116 4.116 6 C -0.094 4.094 7 H 0.086 0.914 8 C 0.120 3.880 9 N -0.638 5.638 10 C 0.698 3.302 11 O -0.599 6.599 12 N -0.730 5.730 13 C 0.266 3.734 14 C -0.541 4.541 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.134 3.866 23 C -0.131 4.131 24 C 0.095 3.905 25 H 0.040 0.960 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.023 0.977 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.385 0.615 38 H 0.025 0.975 39 H 0.024 0.976 40 H 0.265 0.735 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.952 19.465 2.749 23.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.071 4.071 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.114 4.114 7 H 0.105 0.895 8 C -0.005 4.005 9 N -0.377 5.377 10 C 0.399 3.601 11 O -0.478 6.478 12 N -0.384 5.384 13 C 0.145 3.855 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C 0.009 3.991 23 C -0.170 4.170 24 C -0.013 4.013 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.220 0.780 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.107 18.197 3.071 22.635 hybrid contribution 0.928 1.031 -0.578 1.503 sum -12.178 19.228 2.493 22.896 Atomic orbital electron populations 1.22414 0.87498 1.02576 1.00138 1.61881 1.07424 1.13342 1.43757 1.22083 0.95835 0.89077 1.00141 1.21568 0.94223 1.00048 0.99550 1.21602 1.00517 0.94805 0.98536 1.21523 0.94009 0.95991 0.99880 0.89516 1.21504 0.97361 0.84342 0.97265 1.47280 1.05990 1.04765 1.79653 1.16054 0.82627 0.83143 0.78246 1.90853 1.69978 1.28895 1.58066 1.45879 1.03996 1.11854 1.76630 1.18982 0.89125 0.79869 0.97528 1.21216 0.90940 0.93237 1.52539 0.92044 1.24935 0.99435 0.94781 0.94828 1.69979 1.34814 0.98618 1.48877 0.86425 0.84187 0.78057 0.78278 1.20480 1.21028 1.19781 1.21310 0.79275 1.02024 0.96444 1.22122 0.99948 0.94766 1.00118 1.21591 0.94611 0.93880 0.91228 0.94176 0.90747 0.91599 0.95868 0.95157 0.90931 0.91487 0.90911 0.92112 0.91084 0.89777 0.91999 0.77999 0.95681 0.95849 0.92485 0.92557 0.88656 0.90836 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.05 60.06 0.54 0.72 16 2 N -0.54 -5.37 4.74 -234.87 -1.11 -6.48 16 3 C 0.06 0.48 5.47 -3.84 -0.02 0.46 16 4 C -0.12 -0.97 6.09 -26.65 -0.16 -1.14 16 5 C -0.12 -1.06 5.27 -26.62 -0.14 -1.20 16 6 C -0.09 -1.06 2.31 -90.64 -0.21 -1.26 16 7 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 8 C 0.12 1.52 5.67 -3.93 -0.02 1.50 16 9 N -0.64 -10.34 2.98 -178.76 -0.53 -10.87 16 10 C 0.70 15.10 8.30 -86.91 -0.72 14.38 16 11 O -0.60 -15.40 15.79 5.29 0.08 -15.32 16 12 N -0.73 -16.24 5.46 -66.41 -0.36 -16.60 16 13 C 0.27 7.28 5.43 -5.19 -0.03 7.25 16 14 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 15 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 18 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 19 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 C 0.13 1.84 6.42 -3.71 -0.02 1.82 16 23 C -0.13 -1.49 4.98 -26.59 -0.13 -1.63 16 24 C 0.10 1.01 1.68 -67.66 -0.11 0.90 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.60 6.18 -51.93 -0.32 0.28 16 27 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.09 5.57 -51.93 -0.29 0.80 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.39 7.43 5.78 -40.82 -0.24 7.19 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 1.50 7.03 -51.93 -0.37 1.14 16 43 H 0.07 0.70 6.24 -51.93 -0.32 0.38 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -32.65 337.24 -9.98 -42.63 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.40 Total: 2.97 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -1.45 Total: 8.26 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -1.27 Total: -59.62 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.08 Total: -15.32 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.65 -9.98 -42.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336363977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.506 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds