Wall clock time and date at job start Tue Mar 31 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46880 * 111.00327 * 2 1 4 4 C 1.52987 * 109.44186 * 186.08114 * 3 2 1 5 5 C 1.53072 * 109.21863 * 300.69590 * 4 3 2 6 6 H 1.08995 * 110.75943 * 296.17305 * 5 4 3 7 7 C 1.52700 * 109.53753 * 57.25667 * 5 4 3 8 8 H 1.09003 * 109.24382 * 183.32768 * 7 5 4 9 9 C 1.52922 * 109.50126 * 63.53905 * 7 5 4 10 10 C 1.53054 * 109.53512 * 61.23787 * 9 7 5 11 11 C 1.53190 * 109.35122 * 298.88284 * 10 9 7 12 12 N 1.46937 * 108.82366 * 54.54161 * 11 10 9 13 13 C 1.34781 * 120.68060 * 126.21930 * 12 11 10 14 14 O 1.21589 * 119.99570 * 185.22688 * 13 12 11 15 15 N 1.34774 * 120.00056 * 5.22262 * 13 12 11 16 16 C 1.46503 * 119.99908 * 175.01428 * 15 13 12 17 17 C 1.50695 * 109.47074 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00479 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99784 * 179.72662 * 17 16 15 20 20 N 1.31513 * 120.00046 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00126 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46905 * 90.00119 * 21 19 17 23 23 H 1.48497 * 109.47034 * 210.00014 * 21 19 17 24 24 H 1.48501 * 109.47135 * 330.00401 * 21 19 17 25 25 C 1.46832 * 110.99804 * 124.01445 * 2 1 3 26 26 H 1.08997 * 109.46931 * 295.98860 * 1 2 3 27 27 H 1.09001 * 109.46728 * 55.98934 * 1 2 3 28 28 H 1.08997 * 109.47123 * 175.98974 * 1 2 3 29 29 H 1.08997 * 109.47338 * 306.07442 * 3 2 1 30 30 H 1.08997 * 109.47072 * 66.08747 * 3 2 1 31 31 H 1.08995 * 109.47841 * 60.58380 * 4 3 2 32 32 H 1.09003 * 109.47550 * 180.61226 * 4 3 2 33 33 H 1.08995 * 109.46319 * 301.21232 * 9 7 5 34 34 H 1.09004 * 109.46257 * 181.25540 * 9 7 5 35 35 H 1.09000 * 109.49377 * 178.92125 * 10 9 7 36 36 H 1.09000 * 109.48933 * 58.84696 * 10 9 7 37 37 H 1.08998 * 109.57901 * 294.74158 * 11 10 9 38 38 H 1.08998 * 109.68668 * 174.40923 * 11 10 9 39 39 H 0.96998 * 120.00062 * 355.01503 * 15 13 12 40 40 H 1.09002 * 109.46684 * 60.00332 * 16 15 13 41 41 H 1.08998 * 109.46922 * 300.00125 * 16 15 13 42 42 H 0.97003 * 120.00224 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.43732 * 54.23842 * 25 2 1 44 44 H 1.09005 * 109.39067 * 294.36318 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3712 0.0000 4 6 3.5172 1.3324 -0.1528 5 6 4.1199 0.5354 1.0067 6 1 3.9292 1.0327 1.9577 7 6 3.5166 -0.8672 1.0303 8 1 3.9044 -1.4106 1.8920 9 6 3.8983 -1.6087 -0.2515 10 6 5.4211 -1.7388 -0.3334 11 6 6.0485 -0.3418 -0.3723 12 7 5.5692 0.4256 0.7855 13 6 6.4403 1.0120 1.6303 14 8 6.0350 1.5630 2.6355 15 7 7.7606 0.9876 1.3608 16 6 8.6970 1.7173 2.2193 17 6 10.1009 1.5297 1.7047 18 1 10.2780 0.9277 0.8257 19 6 11.1587 2.1319 2.3523 20 7 12.3839 1.9686 1.9029 21 14 10.8517 3.1807 3.8673 22 1 10.9165 2.3278 5.0812 23 1 11.8864 4.2423 3.9523 24 1 9.5078 3.8056 3.7726 25 6 1.9952 -0.7668 1.1363 26 1 -0.3633 0.4503 0.9237 27 1 -0.3633 0.5748 -0.8519 28 1 -0.3633 -1.0251 -0.0719 29 1 1.5608 1.9273 -0.8306 30 1 1.7368 1.8597 0.9394 31 1 3.7756 0.8530 -1.0970 32 1 3.9096 2.3493 -0.1420 33 1 3.5343 -1.0522 -1.1151 34 1 3.4489 -2.6018 -0.2441 35 1 5.6914 -2.2842 -1.2376 36 1 5.7875 -2.2779 0.5402 37 1 5.7563 0.1643 -1.2923 38 1 7.1345 -0.4258 -0.3306 39 1 8.0909 0.4870 0.5985 40 1 8.6291 1.3353 3.2380 41 1 8.4462 2.7780 2.2114 42 1 13.1281 2.3925 2.3583 43 1 1.5643 -1.7681 1.1288 44 1 1.7289 -0.2645 2.0663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336582870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:27 Heat of formation + Delta-G solvation = -23.216499 kcal Electronic energy + Delta-G solvation = -23285.023870 eV Core-core repulsion = 20044.068579 eV Total energy + Delta-G solvation = -3240.955290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71249 -38.72411 -36.40616 -34.35072 -32.98500 -32.60939 -31.87186 -30.49265 -27.90393 -26.69331 -25.26530 -23.19067 -22.87583 -22.09872 -21.65447 -19.62713 -18.26632 -17.94054 -16.43630 -16.35753 -15.78967 -15.41929 -14.91033 -14.86242 -14.56838 -14.27003 -13.74201 -13.68085 -13.45958 -13.12044 -13.09773 -12.79004 -12.43702 -12.39045 -12.26659 -12.06926 -11.83544 -11.39680 -11.32340 -10.96774 -10.89041 -10.74210 -10.57174 -10.52026 -10.20570 -9.93621 -9.46030 -9.40966 -8.74785 -8.54207 -8.43411 -7.89304 -6.18394 -4.19946 3.11126 3.29965 3.36671 3.45561 3.71154 3.79504 4.36480 4.43921 4.69843 4.71667 4.74824 4.92781 4.98231 5.02844 5.09037 5.17370 5.19291 5.27639 5.35136 5.41837 5.48814 5.54735 5.59344 5.63552 5.65603 5.75750 5.84747 5.90580 5.99130 6.00762 6.09911 6.25134 6.44816 6.69159 6.82600 6.85011 6.91333 7.15520 7.30170 7.44825 7.57613 8.29386 8.71029 8.83238 9.24424 9.43785 10.93629 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033495 B = 0.003901 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.734694 B = 7175.109863 C = 7609.950922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.058 3.942 4 C -0.127 4.127 5 C 0.166 3.834 6 H 0.097 0.903 7 C -0.094 4.094 8 H 0.076 0.924 9 C -0.103 4.103 10 C -0.136 4.136 11 C 0.111 3.889 12 N -0.632 5.632 13 C 0.699 3.301 14 O -0.604 6.604 15 N -0.723 5.723 16 C 0.238 3.762 17 C -0.541 4.541 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.894 5.894 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.260 1.260 25 C 0.063 3.937 26 H 0.024 0.976 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.391 0.609 40 H 0.018 0.982 41 H 0.021 0.979 42 H 0.267 0.733 43 H 0.077 0.923 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.148 -6.632 -6.757 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.070 4.070 4 C -0.165 4.165 5 C 0.061 3.939 6 H 0.115 0.885 7 C -0.114 4.114 8 H 0.095 0.905 9 C -0.140 4.140 10 C -0.175 4.175 11 C -0.012 4.012 12 N -0.370 5.370 13 C 0.401 3.599 14 O -0.484 6.484 15 N -0.377 5.377 16 C 0.115 3.885 17 C -0.579 4.579 18 H 0.096 0.904 19 C -0.126 4.126 20 N -0.531 5.531 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.185 1.185 25 C -0.066 4.066 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.227 0.773 40 H 0.036 0.964 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -22.005 -6.359 -6.400 23.782 hybrid contribution -0.033 0.636 1.140 1.306 sum -22.038 -5.722 -5.260 23.368 Atomic orbital electron populations 1.22341 0.87418 1.02116 1.00430 1.61987 1.07348 1.13891 1.43238 1.22073 0.95333 0.88972 1.00671 1.21965 0.93876 1.00885 0.99811 1.20875 0.78712 0.95002 0.99286 0.88524 1.21398 0.93927 0.96704 0.99371 0.90527 1.21433 0.94679 0.99949 0.97984 1.21952 0.96324 0.96759 1.02437 1.21576 0.99146 0.91558 0.88968 1.47362 1.05320 1.56100 1.28176 1.16030 0.81693 0.79524 0.82667 1.90837 1.78245 1.51619 1.27686 1.45567 1.04227 1.54641 1.33295 1.19352 0.87577 0.91517 0.90061 1.21088 0.88779 1.33262 1.14759 0.90371 1.24777 0.94742 0.95765 0.97324 1.69881 0.98755 1.43916 1.40574 0.86809 0.78823 0.80671 0.83341 1.19863 1.20960 1.18476 1.22053 0.94759 0.98353 0.91390 0.95763 0.91422 0.91427 0.90575 0.94667 0.90460 0.91084 0.90420 0.92252 0.90890 0.91652 0.91664 0.90134 0.77265 0.96368 0.96067 0.92302 0.90508 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.59 60.07 0.58 0.76 16 2 N -0.54 -4.98 4.29 -243.10 -1.04 -6.02 16 3 C 0.06 0.56 5.46 -3.84 -0.02 0.54 16 4 C -0.13 -1.45 5.08 -26.70 -0.14 -1.59 16 5 C 0.17 2.25 2.64 -67.77 -0.18 2.07 16 6 H 0.10 1.57 7.01 -51.93 -0.36 1.20 16 7 C -0.09 -1.05 2.56 -90.89 -0.23 -1.28 16 8 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 9 C -0.10 -1.01 4.79 -26.74 -0.13 -1.14 16 10 C -0.14 -1.41 6.08 -26.60 -0.16 -1.58 16 11 C 0.11 1.38 5.93 -3.71 -0.02 1.36 16 12 N -0.63 -9.86 2.65 -171.08 -0.45 -10.31 16 13 C 0.70 14.47 8.30 -86.92 -0.72 13.75 16 14 O -0.60 -14.73 15.78 5.29 0.08 -14.65 16 15 N -0.72 -15.55 5.46 -66.41 -0.36 -15.92 16 16 C 0.24 6.06 4.50 -5.19 -0.02 6.04 16 17 C -0.54 -15.11 9.83 -34.44 -0.34 -15.45 16 18 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 19 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 20 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 21 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 25 C 0.06 0.60 4.88 -3.94 -0.02 0.58 16 26 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.85 5.49 -51.93 -0.29 0.57 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.79 6.10 -51.93 -0.32 0.47 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.73 7.26 -51.93 -0.38 0.35 16 38 H 0.08 1.03 5.65 -51.93 -0.29 0.74 16 39 H 0.39 7.50 5.81 -40.82 -0.24 7.26 16 40 H 0.02 0.49 7.59 -51.93 -0.39 0.09 16 41 H 0.02 0.57 7.18 -51.93 -0.37 0.20 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 44 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 331.29 15.07 4.99 4.99 Total: -1.00 -32.37 331.29 -9.47 -41.84 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.29 Total: 2.75 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -1.50 Total: 6.19 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -1.09 Total: -58.26 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.08 Total: -14.65 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.37 -9.47 -41.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336582870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.619 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds