Wall clock time and date at job start Tue Mar 31 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46891 * 110.99667 * 2 1 4 4 C 1.53023 * 109.31468 * 186.25102 * 3 2 1 5 5 C 1.52838 * 109.54871 * 300.91484 * 4 3 2 6 6 H 1.08998 * 109.48473 * 176.93768 * 5 4 3 7 7 C 1.53170 * 109.73847 * 56.74616 * 5 4 3 8 8 H 1.09003 * 109.63739 * 64.63433 * 7 5 4 9 9 C 1.53211 * 108.96970 * 184.63492 * 7 5 4 10 10 C 1.53052 * 109.37135 * 61.79429 * 9 7 5 11 11 C 1.53175 * 109.42440 * 298.52083 * 10 9 7 12 12 N 1.46784 * 109.72825 * 297.18234 * 5 4 3 13 13 C 1.34775 * 120.69046 * 353.95894 * 12 5 4 14 14 O 1.21591 * 120.00071 * 352.54032 * 13 12 5 15 15 N 1.34778 * 120.00312 * 172.54656 * 13 12 5 16 16 C 1.46506 * 120.00309 * 185.03759 * 15 13 12 17 17 C 1.50695 * 109.47173 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00261 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99643 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00338 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99737 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47128 * 60.00249 * 21 19 17 23 23 H 1.48497 * 109.46901 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47413 * 299.99886 * 21 19 17 25 25 C 1.46857 * 110.92647 * 124.66710 * 2 1 3 26 26 H 1.08994 * 109.47114 * 56.05018 * 1 2 3 27 27 H 1.09007 * 109.46903 * 176.04842 * 1 2 3 28 28 H 1.08997 * 109.47271 * 296.04603 * 1 2 3 29 29 H 1.08998 * 109.50076 * 66.30002 * 3 2 1 30 30 H 1.08997 * 109.52549 * 306.21661 * 3 2 1 31 31 H 1.08996 * 109.46044 * 180.88831 * 4 3 2 32 32 H 1.09000 * 109.45656 * 60.93541 * 4 3 2 33 33 H 1.08995 * 109.49046 * 301.82470 * 9 7 5 34 34 H 1.09000 * 109.48661 * 181.75929 * 9 7 5 35 35 H 1.09001 * 109.48327 * 58.50882 * 10 9 7 36 36 H 1.09005 * 109.47796 * 178.53451 * 10 9 7 37 37 H 1.09007 * 109.57569 * 174.19945 * 11 10 9 38 38 H 1.09002 * 109.57657 * 294.58887 * 11 10 9 39 39 H 0.97000 * 120.00251 * 5.02683 * 15 13 12 40 40 H 1.09005 * 109.46347 * 299.99905 * 16 15 13 41 41 H 1.09002 * 109.47206 * 59.98855 * 16 15 13 42 42 H 0.97000 * 120.00384 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.97239 * 54.12209 * 25 2 1 44 44 H 1.08993 * 108.91581 * 294.26889 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5169 1.3295 -0.1572 5 6 4.1280 0.5282 0.9919 6 1 5.2060 0.4529 0.8497 7 6 3.5176 -0.8762 1.0251 8 1 3.7902 -1.4156 0.1179 9 6 4.0547 -1.6238 2.2498 10 6 3.6305 -0.8855 3.5216 11 6 4.2301 0.5240 3.5164 12 7 3.8467 1.1979 2.2674 13 6 3.2497 2.4059 2.2932 14 8 3.0610 3.0130 1.2567 15 7 2.8620 2.9412 3.4678 16 6 2.1152 4.2015 3.4876 17 6 1.8048 4.5791 4.9130 18 1 2.1308 3.9437 5.7232 19 6 1.1047 5.7358 5.1828 20 7 0.7081 6.5098 4.1963 21 14 0.7193 6.2036 6.9498 22 1 1.9866 6.3666 7.7063 23 1 -0.0365 7.4817 6.9699 24 1 -0.0981 5.1347 7.5779 25 6 1.9936 -0.7802 1.1282 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 -0.3633 0.4512 0.9233 29 1 1.7402 1.8591 0.9408 30 1 1.5592 1.9290 -0.8288 31 1 3.9116 2.3454 -0.1417 32 1 3.7710 0.8560 -1.1055 33 1 5.1427 -1.6679 2.2007 34 1 3.6497 -2.6357 2.2646 35 1 2.5432 -0.8179 3.5571 36 1 3.9896 -1.4301 4.3949 37 1 3.8474 1.0868 4.3678 38 1 5.3165 0.4589 3.5777 39 1 3.0773 2.4920 4.3001 40 1 2.7145 4.9861 3.0256 41 1 1.1846 4.0811 2.9329 42 1 0.2152 7.3234 4.3861 43 1 1.5657 -1.7828 1.1184 44 1 1.7239 -0.2810 2.0588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336582871.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:29 Heat of formation + Delta-G solvation = 9.217261 kcal Electronic energy + Delta-G solvation = -24195.016464 eV Core-core repulsion = 20955.467607 eV Total energy + Delta-G solvation = -3239.548857 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02572 -37.98659 -36.42030 -34.48898 -32.92875 -32.69382 -31.60071 -29.51602 -27.22652 -26.60409 -25.14847 -23.39787 -22.92473 -22.17310 -20.82579 -20.01572 -18.48316 -17.35752 -16.10152 -15.88559 -15.69465 -15.29499 -15.13273 -14.69176 -14.34474 -13.96144 -13.87433 -13.58322 -13.19574 -12.90880 -12.87936 -12.56994 -12.17226 -12.04563 -11.88195 -11.77065 -11.42484 -11.30533 -11.00939 -10.97079 -10.91740 -10.71865 -10.44261 -10.31694 -10.23511 -10.02268 -9.39017 -8.72473 -8.55127 -8.27313 -7.92788 -7.59447 -6.16476 -4.23152 3.20027 3.24417 3.29769 3.31884 3.83483 4.24206 4.30125 4.55900 4.78160 4.81518 4.88323 5.00416 5.19555 5.21546 5.33527 5.45535 5.47669 5.55339 5.59118 5.66146 5.71102 5.79780 5.80697 5.89121 5.91805 6.02061 6.07008 6.11131 6.16355 6.27248 6.43333 6.67332 6.71381 6.95653 7.17732 7.35008 7.43239 7.52637 7.55865 7.59501 7.86370 8.02140 8.75202 8.90302 9.33139 9.47719 10.93610 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021004 B = 0.005105 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.764517 B = 5483.379337 C = 5939.441076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.555 5.555 3 C 0.057 3.943 4 C -0.111 4.111 5 C 0.171 3.829 6 H 0.064 0.936 7 C -0.096 4.096 8 H 0.084 0.916 9 C -0.112 4.112 10 C -0.139 4.139 11 C 0.113 3.887 12 N -0.633 5.633 13 C 0.695 3.305 14 O -0.583 6.583 15 N -0.732 5.732 16 C 0.269 3.731 17 C -0.543 4.543 18 H 0.060 0.940 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.903 3.097 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.276 1.276 25 C 0.066 3.934 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.023 0.977 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.384 0.616 40 H 0.025 0.975 41 H 0.021 0.979 42 H 0.266 0.734 43 H 0.065 0.935 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.677 -16.780 -3.802 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.280 5.280 3 C -0.069 4.069 4 C -0.149 4.149 5 C 0.067 3.933 6 H 0.082 0.918 7 C -0.116 4.116 8 H 0.103 0.897 9 C -0.150 4.150 10 C -0.177 4.177 11 C -0.011 4.011 12 N -0.373 5.373 13 C 0.397 3.603 14 O -0.463 6.463 15 N -0.386 5.386 16 C 0.147 3.853 17 C -0.581 4.581 18 H 0.078 0.922 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.201 1.201 25 C -0.062 4.062 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.129 0.871 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.218 0.782 40 H 0.043 0.957 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.544 -16.302 -5.019 17.936 hybrid contribution -0.489 0.385 2.166 2.253 sum 5.055 -15.917 -2.853 16.943 Atomic orbital electron populations 1.22256 0.88022 1.01149 1.00538 1.61880 1.07020 1.15910 1.43231 1.22625 0.94879 0.86482 1.02916 1.22015 0.95532 1.02315 0.95007 1.20903 0.97991 0.91021 0.83399 0.91847 1.21590 0.95286 0.96187 0.98513 0.89748 1.21548 1.00671 0.98586 0.94184 1.21994 1.01843 0.95822 0.98083 1.21556 0.99283 0.93147 0.87083 1.47270 1.64936 1.18823 1.06223 1.16012 0.78637 0.80672 0.84963 1.90827 1.62109 1.62479 1.30893 1.46027 1.59319 1.27640 1.05603 1.18936 0.90563 0.78780 0.96978 1.21175 1.37245 1.07978 0.91713 0.92178 1.24929 0.95319 0.95914 0.97743 1.69963 1.37298 1.13653 1.31324 0.86491 0.78522 0.77866 0.84121 1.20077 1.21042 1.20131 1.22037 0.94286 0.97453 0.92441 0.91680 0.92155 0.95879 0.91275 0.91931 0.87113 0.93071 0.91670 0.91825 0.91149 0.91035 0.90227 0.91827 0.78158 0.95682 0.96074 0.92410 0.91692 0.94499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.59 60.07 0.58 0.97 16 2 N -0.56 -8.37 4.89 -242.91 -1.19 -9.56 16 3 C 0.06 1.00 4.42 -3.82 -0.02 0.98 16 4 C -0.11 -1.78 5.02 -26.80 -0.13 -1.92 16 5 C 0.17 2.40 3.05 -67.77 -0.21 2.19 16 6 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 7 C -0.10 -1.13 2.71 -90.39 -0.25 -1.38 16 8 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 9 C -0.11 -1.06 5.43 -26.60 -0.14 -1.21 16 10 C -0.14 -1.42 5.72 -26.61 -0.15 -1.57 16 11 C 0.11 1.38 6.44 -3.67 -0.02 1.36 16 12 N -0.63 -9.82 2.40 -171.06 -0.41 -10.23 16 13 C 0.69 13.99 6.74 -86.92 -0.59 13.40 16 14 O -0.58 -13.30 10.18 5.29 0.05 -13.24 16 15 N -0.73 -15.64 5.47 -66.41 -0.36 -16.00 16 16 C 0.27 7.12 5.43 -5.19 -0.03 7.09 16 17 C -0.54 -14.74 9.28 -34.44 -0.32 -15.06 16 18 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 19 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 21 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 C 0.07 0.89 4.29 -3.82 -0.02 0.87 16 26 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 27 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 1.46 4.69 -52.01 -0.24 1.22 16 30 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 31 H 0.11 2.07 5.85 -52.23 -0.31 1.76 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.82 6.21 -51.93 -0.32 0.50 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.00 5.58 -51.93 -0.29 0.71 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.38 7.24 5.79 -40.82 -0.24 7.01 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 44 H 0.04 0.57 5.82 -51.93 -0.30 0.27 16 LS Contribution 324.37 15.07 4.89 4.89 Total: -1.00 -30.38 324.37 -9.84 -40.22 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.15 Total: 5.97 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -1.39 Total: 7.44 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -1.22 Total: -61.10 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.05 Total: -13.24 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.38 -9.84 -40.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336582871.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.441 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds