Wall clock time and date at job start Tue Mar 31 2020 06:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46711 * 111.00007 * 2 1 4 4 C 1.53245 * 110.10488 * 184.90296 * 3 2 1 5 5 C 1.52898 * 108.35475 * 301.03836 * 4 3 2 6 6 H 1.09003 * 110.40982 * 299.58959 * 5 4 3 7 7 C 1.53846 * 108.36319 * 59.73142 * 5 4 3 8 8 H 1.08995 * 109.51059 * 58.09811 * 7 5 4 9 9 C 1.52684 * 108.88205 * 177.63768 * 7 5 4 10 10 C 1.53229 * 109.00865 * 297.51369 * 9 7 5 11 11 C 1.53075 * 109.87318 * 60.41194 * 10 9 7 12 12 N 1.46596 * 110.73460 * 178.10755 * 5 4 3 13 13 C 1.34773 * 121.03564 * 6.23426 * 12 5 4 14 14 O 1.21586 * 120.00380 * 5.05017 * 13 12 5 15 15 N 1.34785 * 119.99939 * 185.06189 * 13 12 5 16 16 C 1.46502 * 119.99939 * 174.93252 * 15 13 12 17 17 C 1.50693 * 109.46879 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00186 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99962 * 179.97438 * 17 16 15 20 20 N 1.31508 * 119.99791 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00059 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47174 * 270.00163 * 21 19 17 23 23 H 1.48495 * 109.47018 * 30.00110 * 21 19 17 24 24 H 1.48498 * 109.46859 * 150.00241 * 21 19 17 25 25 C 1.47075 * 110.99918 * 125.01396 * 2 1 3 26 26 H 1.08995 * 109.47522 * 294.97949 * 1 2 3 27 27 H 1.08997 * 109.46763 * 54.98344 * 1 2 3 28 28 H 1.09002 * 109.46755 * 174.97871 * 1 2 3 29 29 H 1.09005 * 109.36537 * 305.09987 * 3 2 1 30 30 H 1.09003 * 109.36387 * 64.83641 * 3 2 1 31 31 H 1.09000 * 109.60231 * 61.23107 * 4 3 2 32 32 H 1.08998 * 109.61000 * 181.55948 * 4 3 2 33 33 H 1.09002 * 109.54863 * 177.64979 * 9 7 5 34 34 H 1.09006 * 109.62949 * 57.41824 * 9 7 5 35 35 H 1.09004 * 109.40212 * 300.28995 * 10 9 7 36 36 H 1.09001 * 109.34134 * 180.49410 * 10 9 7 37 37 H 1.09003 * 109.50150 * 186.67409 * 11 10 9 38 38 H 1.09001 * 109.50317 * 66.55927 * 11 10 9 39 39 H 0.96995 * 119.99772 * 354.92328 * 15 13 12 40 40 H 1.09000 * 109.46988 * 59.99868 * 16 15 13 41 41 H 1.08992 * 109.46970 * 299.99557 * 16 15 13 42 42 H 0.97009 * 119.99746 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.56430 * 54.60212 * 25 2 1 44 44 H 1.08995 * 109.56964 * 294.23806 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9948 1.3697 0.0000 4 6 3.5221 1.3476 -0.1230 5 6 4.0887 0.5548 1.0552 6 1 3.8111 1.0252 1.9985 7 6 3.5158 -0.8720 0.9996 8 1 3.7752 -1.3314 0.0458 9 6 4.1198 -1.6917 2.1373 10 6 5.6360 -1.7839 1.9358 11 6 6.2486 -0.3811 1.9468 12 7 5.5489 0.4626 0.9646 13 6 6.2299 1.1340 0.0150 14 8 5.6449 1.9009 -0.7253 15 7 7.5596 0.9552 -0.1143 16 6 8.2815 1.5982 -1.2151 17 6 9.7433 1.2415 -1.1331 18 1 10.0990 0.5997 -0.3406 19 6 10.6266 1.7337 -2.0704 20 7 10.1934 2.5147 -3.0357 21 14 12.4386 1.2910 -1.9693 22 1 13.1480 2.2959 -1.1373 23 1 12.5863 -0.0530 -1.3554 24 1 13.0220 1.2783 -3.3348 25 6 1.9961 -0.7878 1.1246 26 1 -0.3634 0.4339 0.9315 27 1 -0.3633 0.5897 -0.8416 28 1 -0.3633 -1.0238 -0.0900 29 1 1.5723 1.9190 -0.8414 30 1 1.7161 1.8638 0.9308 31 1 3.8065 0.8760 -1.0637 32 1 3.9062 2.3673 -0.0944 33 1 3.6897 -2.6933 2.1335 34 1 3.9074 -1.2073 3.0905 35 1 5.8457 -2.2632 0.9796 36 1 6.0718 -2.3757 2.7408 37 1 7.3051 -0.4434 1.6859 38 1 6.1437 0.0540 2.9407 39 1 8.0385 0.4010 0.5216 40 1 8.1671 2.6797 -1.1419 41 1 7.8758 1.2533 -2.1661 42 1 10.8150 2.8613 -3.6950 43 1 1.5714 -1.7914 1.0979 44 1 1.7333 -0.3031 2.0648 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336582872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:32 Heat of formation + Delta-G solvation = -17.473062 kcal Electronic energy + Delta-G solvation = -23315.514080 eV Core-core repulsion = 20074.807844 eV Total energy + Delta-G solvation = -3240.706236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55083 -38.38456 -36.50097 -34.40066 -32.97066 -32.67976 -31.69755 -30.02707 -27.32377 -26.62975 -24.98312 -23.26372 -22.96451 -22.10511 -20.60195 -20.02273 -19.13462 -17.62887 -16.07736 -15.91140 -15.47439 -15.24519 -15.10020 -14.69381 -14.44516 -14.39549 -14.03186 -13.42528 -13.12008 -13.06280 -12.90231 -12.59798 -12.39793 -12.21471 -11.91890 -11.71115 -11.55635 -11.31754 -11.19360 -10.93540 -10.88042 -10.79278 -10.73264 -10.55040 -10.21962 -10.15147 -9.32864 -8.70033 -8.68296 -8.34993 -8.23655 -7.65923 -6.12395 -4.18685 3.21436 3.26492 3.32945 3.35680 3.83962 3.95819 4.33457 4.54265 4.74517 4.76021 4.88684 4.97859 5.10507 5.16639 5.20872 5.23710 5.32536 5.36276 5.42069 5.49738 5.59275 5.63375 5.65887 5.69817 5.72513 5.80560 5.88530 5.98139 6.05151 6.09014 6.30110 6.52473 6.70349 6.98101 7.04353 7.10155 7.22503 7.56540 7.62137 7.62370 7.91184 8.06704 8.80281 8.96106 9.38432 9.53042 10.97823 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027905 B = 0.004022 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.167500 B = 6960.839457 C = 7700.741659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.548 5.548 3 C 0.050 3.950 4 C -0.101 4.101 5 C 0.172 3.828 6 H 0.059 0.941 7 C -0.101 4.101 8 H 0.084 0.916 9 C -0.109 4.109 10 C -0.133 4.133 11 C 0.113 3.887 12 N -0.635 5.635 13 C 0.698 3.302 14 O -0.591 6.591 15 N -0.731 5.731 16 C 0.267 3.733 17 C -0.541 4.541 18 H 0.061 0.939 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.903 3.097 22 H -0.279 1.279 23 H -0.273 1.273 24 H -0.285 1.285 25 C 0.068 3.932 26 H 0.021 0.979 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.384 0.616 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.265 0.735 43 H 0.074 0.926 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.549 -8.328 12.001 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.272 5.272 3 C -0.078 4.078 4 C -0.139 4.139 5 C 0.067 3.933 6 H 0.077 0.923 7 C -0.121 4.121 8 H 0.102 0.898 9 C -0.148 4.148 10 C -0.172 4.172 11 C -0.011 4.011 12 N -0.374 5.374 13 C 0.400 3.600 14 O -0.470 6.470 15 N -0.385 5.385 16 C 0.146 3.854 17 C -0.579 4.579 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.205 1.205 23 H -0.198 1.198 24 H -0.210 1.210 25 C -0.060 4.060 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.218 0.782 40 H 0.043 0.957 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -15.699 -7.847 10.792 20.603 hybrid contribution 0.972 -0.172 1.099 1.478 sum -14.727 -8.019 11.891 20.556 Atomic orbital electron populations 1.22322 0.87601 1.01951 1.00235 1.61746 1.07149 1.14411 1.43914 1.22385 0.97272 0.88084 1.00070 1.22075 0.90707 1.02941 0.98159 1.21064 0.78793 0.94774 0.98659 0.92306 1.21689 0.93734 0.96555 1.00132 0.89759 1.21455 0.95363 0.99890 0.98049 1.21903 0.95636 0.96926 1.02717 1.21552 0.96758 0.90377 0.92421 1.47316 1.06187 1.50690 1.33236 1.16082 0.82468 0.80858 0.80579 1.90860 1.67686 1.40802 1.47653 1.45954 1.05523 1.53688 1.33355 1.18953 0.89752 0.93132 0.83559 1.21221 0.92200 1.31645 1.12873 0.92103 1.24934 0.99290 0.94808 0.94951 1.69981 1.35283 1.32456 1.14539 0.86431 0.84316 0.78801 0.77440 1.20509 1.19795 1.21024 1.22003 0.94662 0.97935 0.91397 0.96017 0.91424 0.91625 0.90614 0.95550 0.89921 0.88351 0.91750 0.92033 0.91241 0.90901 0.90072 0.92023 0.78153 0.95727 0.95867 0.92504 0.90758 0.95007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.60 60.07 0.58 0.83 16 2 N -0.55 -6.56 4.88 -242.95 -1.19 -7.74 16 3 C 0.05 0.64 5.44 -3.80 -0.02 0.62 16 4 C -0.10 -1.62 3.83 -26.66 -0.10 -1.72 16 5 C 0.17 2.46 2.71 -67.49 -0.18 2.27 16 6 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 7 C -0.10 -1.21 2.15 -90.48 -0.19 -1.40 16 8 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 9 C -0.11 -1.05 5.30 -26.78 -0.14 -1.19 16 10 C -0.13 -1.37 6.05 -26.57 -0.16 -1.53 16 11 C 0.11 1.40 6.43 -3.63 -0.02 1.38 16 12 N -0.64 -10.25 2.96 -170.69 -0.51 -10.75 16 13 C 0.70 14.70 8.19 -86.91 -0.71 13.99 16 14 O -0.59 -14.28 12.12 5.29 0.06 -14.21 16 15 N -0.73 -16.06 5.47 -66.42 -0.36 -16.43 16 16 C 0.27 7.23 5.43 -5.20 -0.03 7.20 16 17 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 18 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 21 Si 0.90 21.01 29.54 -169.99 -5.02 15.98 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.07 0.73 4.88 -3.87 -0.02 0.71 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 30 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 1.58 7.30 -51.93 -0.38 1.20 16 32 H 0.10 1.82 6.43 -51.93 -0.33 1.48 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.03 5.61 -51.93 -0.29 0.74 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.38 7.37 5.82 -40.82 -0.24 7.13 16 40 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 44 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 335.53 15.07 5.06 5.06 Total: -1.00 -31.56 335.53 -10.18 -41.74 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.53 Total: 4.28 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -1.43 Total: 7.66 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -1.32 Total: -60.51 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.06 Total: -14.21 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.56 -10.18 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336582872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.267 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds