Wall clock time and date at job start Tue Mar 31 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46723 * 110.99763 * 2 1 4 4 C 1.53255 * 110.08794 * 175.08523 * 3 2 1 5 5 C 1.52797 * 108.80519 * 58.45337 * 4 3 2 6 6 H 1.09002 * 109.52830 * 60.77106 * 5 4 3 7 7 C 1.53372 * 108.66698 * 301.32115 * 5 4 3 8 8 H 1.08997 * 109.23249 * 300.71879 * 7 5 4 9 9 C 1.52685 * 108.64793 * 181.47969 * 7 5 4 10 10 C 1.53228 * 108.99880 * 62.40892 * 9 7 5 11 11 C 1.53066 * 109.88262 * 299.59696 * 10 9 7 12 12 N 1.46243 * 110.93649 * 182.10960 * 5 4 3 13 13 C 1.34776 * 121.30507 * 354.79530 * 12 5 4 14 14 O 1.21584 * 120.00236 * 354.83750 * 13 12 5 15 15 N 1.34777 * 120.00181 * 174.84078 * 13 12 5 16 16 C 1.46498 * 120.00276 * 185.06056 * 15 13 12 17 17 C 1.50701 * 109.47395 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99660 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00296 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99991 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99660 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47060 * 89.99809 * 21 19 17 23 23 H 1.48494 * 109.46895 * 209.99823 * 21 19 17 24 24 H 1.48500 * 109.47179 * 330.00084 * 21 19 17 25 25 C 1.47070 * 110.99972 * 234.99618 * 2 1 3 26 26 H 1.08996 * 109.47524 * 56.03898 * 1 2 3 27 27 H 1.08997 * 109.46865 * 176.04765 * 1 2 3 28 28 H 1.09003 * 109.46931 * 296.04136 * 1 2 3 29 29 H 1.09002 * 109.36693 * 54.90389 * 3 2 1 30 30 H 1.08995 * 109.37167 * 295.27748 * 3 2 1 31 31 H 1.08993 * 109.60177 * 178.28916 * 4 3 2 32 32 H 1.09003 * 109.60531 * 298.61821 * 4 3 2 33 33 H 1.09000 * 109.55164 * 182.26790 * 9 7 5 34 34 H 1.09005 * 109.54755 * 302.46080 * 9 7 5 35 35 H 1.08997 * 109.40053 * 59.72321 * 10 9 7 36 36 H 1.09001 * 109.40258 * 179.55076 * 10 9 7 37 37 H 1.08997 * 109.50477 * 173.32064 * 11 10 9 38 38 H 1.08998 * 109.49936 * 293.39382 * 11 10 9 39 39 H 0.97004 * 120.00148 * 5.06490 * 15 13 12 40 40 H 1.09005 * 109.47353 * 300.00113 * 16 15 13 41 41 H 1.09001 * 109.46879 * 60.00245 * 16 15 13 42 42 H 0.97004 * 120.00024 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.56360 * 305.40817 * 25 2 1 44 44 H 1.08999 * 109.56863 * 65.76021 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9948 1.3698 0.0000 4 6 3.5222 1.3474 0.1233 5 6 4.0988 0.5460 -1.0429 6 1 3.8231 1.0223 -1.9838 7 6 3.5158 -0.8720 -0.9999 8 1 3.7751 -1.3381 -0.0494 9 6 4.1204 -1.6832 -2.1434 10 6 5.6353 -1.7846 -1.9367 11 6 6.2547 -0.3849 -1.9310 12 7 5.5548 0.4526 -0.9435 13 6 6.2350 1.1116 0.0154 14 8 5.6504 1.8739 0.7606 15 7 7.5633 0.9258 0.1481 16 6 8.2837 1.5548 1.2579 17 6 9.7443 1.1925 1.1783 18 1 10.1003 0.5569 0.3809 19 6 10.6262 1.6725 2.1232 20 7 11.9007 1.3559 2.0540 21 14 10.0102 2.7713 3.5026 22 1 9.6108 1.9335 4.6619 23 1 11.0914 3.7024 3.9139 24 1 8.8388 3.5512 3.0286 25 6 1.9961 -0.7876 -1.1247 26 1 -0.3634 0.5740 -0.8523 27 1 -0.3633 -1.0252 -0.0708 28 1 -0.3633 0.4512 0.9234 29 1 1.5723 1.9191 0.8414 30 1 1.7144 1.8646 -0.9298 31 1 3.9066 2.3668 0.0920 32 1 3.8062 0.8781 1.0653 33 1 3.6856 -2.6827 -2.1512 34 1 3.9126 -1.1877 -3.0918 35 1 5.8387 -2.2745 -0.9845 36 1 6.0728 -2.3696 -2.7456 37 1 7.3097 -0.4548 -1.6663 38 1 6.1567 0.0604 -2.9210 39 1 8.0423 0.3756 -0.4912 40 1 8.1743 2.6375 1.1949 41 1 7.8726 1.2025 2.2040 42 1 12.5213 1.6939 2.7186 43 1 1.5713 -1.7911 -1.0983 44 1 1.7332 -0.3027 -2.0648 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336582873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:34 Heat of formation + Delta-G solvation = -14.729272 kcal Electronic energy + Delta-G solvation = -23377.863167 eV Core-core repulsion = 20137.275910 eV Total energy + Delta-G solvation = -3240.587257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.66620 -38.50320 -36.59514 -34.53177 -33.05283 -32.69838 -31.83501 -30.10967 -27.87741 -26.74646 -25.08187 -23.27112 -23.00498 -21.81582 -20.67516 -20.05305 -19.32182 -17.71776 -16.34161 -16.13345 -15.55243 -15.30514 -15.16329 -14.66130 -14.51905 -14.32314 -14.17078 -13.53123 -13.25085 -13.10812 -12.96304 -12.69712 -12.49410 -12.29727 -12.20782 -12.05005 -11.64074 -11.37038 -11.25312 -10.92094 -10.91281 -10.77980 -10.72152 -10.60336 -10.21172 -9.91293 -9.43741 -8.85815 -8.73777 -8.41336 -8.36926 -7.89520 -6.18112 -4.19687 3.11095 3.30415 3.37250 3.46208 3.77582 3.81647 4.36839 4.45174 4.66763 4.70832 4.80242 4.92878 5.05910 5.11202 5.13137 5.17775 5.27324 5.31342 5.37343 5.45125 5.53512 5.58291 5.61499 5.64863 5.68315 5.76166 5.84951 5.92364 5.99163 6.05193 6.24530 6.45064 6.59486 6.78220 6.95599 6.98581 7.03688 7.16361 7.32195 7.45188 7.57893 8.29416 8.71300 8.83423 9.26050 9.44285 10.93924 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024684 B = 0.004404 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.064207 B = 6355.805876 C = 7227.194696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.548 5.548 3 C 0.051 3.949 4 C -0.102 4.102 5 C 0.171 3.829 6 H 0.058 0.942 7 C -0.101 4.101 8 H 0.084 0.916 9 C -0.110 4.110 10 C -0.133 4.133 11 C 0.111 3.889 12 N -0.632 5.632 13 C 0.701 3.299 14 O -0.594 6.594 15 N -0.724 5.724 16 C 0.238 3.762 17 C -0.541 4.541 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.894 5.894 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.260 1.260 25 C 0.069 3.931 26 H 0.022 0.978 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.027 0.973 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.390 0.610 40 H 0.023 0.977 41 H 0.017 0.983 42 H 0.267 0.733 43 H 0.075 0.925 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.823 -5.733 -9.968 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.272 5.272 3 C -0.077 4.077 4 C -0.140 4.140 5 C 0.067 3.933 6 H 0.076 0.924 7 C -0.121 4.121 8 H 0.102 0.898 9 C -0.148 4.148 10 C -0.172 4.172 11 C -0.013 4.013 12 N -0.370 5.370 13 C 0.402 3.598 14 O -0.473 6.473 15 N -0.379 5.379 16 C 0.116 3.884 17 C -0.579 4.579 18 H 0.096 0.904 19 C -0.126 4.126 20 N -0.532 5.532 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.184 1.184 25 C -0.060 4.060 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.226 0.774 40 H 0.041 0.959 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -19.849 -5.340 -8.847 22.378 hybrid contribution -0.149 0.532 -0.382 0.672 sum -19.998 -4.808 -9.229 22.544 Atomic orbital electron populations 1.22326 0.87538 1.01553 1.00709 1.61748 1.07201 1.14360 1.43919 1.22353 0.97061 0.88141 1.00128 1.22036 0.90866 1.02628 0.98449 1.20831 0.78790 0.94900 0.98808 0.92369 1.21593 0.93767 0.96581 1.00167 0.89795 1.21465 0.95367 0.99984 0.97986 1.21900 0.95576 0.96880 1.02834 1.21592 0.96801 0.90530 0.92343 1.47157 1.06259 1.51230 1.32387 1.16029 0.82326 0.80773 0.80625 1.90857 1.67782 1.41009 1.47679 1.45636 1.05631 1.54218 1.32366 1.19341 0.91439 0.93326 0.84332 1.21094 0.90001 1.32888 1.13938 0.90431 1.24778 0.94600 0.95691 0.97543 1.69882 1.02548 1.44820 1.35901 0.86808 0.79132 0.81164 0.82547 1.19881 1.20986 1.18396 1.22002 0.94565 0.97953 0.91452 0.95931 0.91640 0.91400 0.90627 0.95482 0.88599 0.89938 0.91682 0.91977 0.91195 0.90744 0.89927 0.91830 0.77433 0.95876 0.96500 0.92313 0.90656 0.94974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.63 60.07 0.58 0.82 16 2 N -0.55 -6.27 4.88 -242.94 -1.19 -7.45 16 3 C 0.05 0.63 5.46 -3.79 -0.02 0.61 16 4 C -0.10 -1.55 3.84 -26.70 -0.10 -1.66 16 5 C 0.17 2.35 2.65 -67.98 -0.18 2.17 16 6 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 7 C -0.10 -1.16 2.14 -90.73 -0.19 -1.35 16 8 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 9 C -0.11 -1.02 5.30 -26.78 -0.14 -1.16 16 10 C -0.13 -1.34 6.05 -26.58 -0.16 -1.50 16 11 C 0.11 1.35 6.42 -3.64 -0.02 1.32 16 12 N -0.63 -9.80 2.96 -171.31 -0.51 -10.30 16 13 C 0.70 14.08 8.20 -86.92 -0.71 13.37 16 14 O -0.59 -13.56 12.16 5.29 0.06 -13.50 16 15 N -0.72 -15.32 5.47 -66.41 -0.36 -15.68 16 16 C 0.24 5.99 4.50 -5.19 -0.02 5.97 16 17 C -0.54 -15.03 9.83 -34.44 -0.34 -15.37 16 18 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 19 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 20 N -0.89 -26.73 13.96 55.43 0.77 -25.95 16 21 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 25 C 0.07 0.70 4.89 -3.88 -0.02 0.68 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.06 0.51 8.02 -51.93 -0.42 0.09 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 1.68 6.51 -51.93 -0.34 1.34 16 32 H 0.08 1.50 7.23 -51.93 -0.38 1.13 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.03 5.61 -51.93 -0.29 0.74 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.39 7.39 5.82 -40.82 -0.24 7.15 16 40 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 41 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 44 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -31.61 331.87 -9.82 -41.42 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.49 Total: 3.41 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -1.44 Total: 6.01 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -1.28 Total: -59.39 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.06 Total: -13.50 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.61 -9.82 -41.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336582873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.694 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds