Wall clock time and date at job start Tue Mar 31 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46723 * 110.99763 * 2 1 4 4 C 1.53255 * 110.08794 * 175.08523 * 3 2 1 5 5 C 1.52797 * 108.80519 * 58.45337 * 4 3 2 6 6 H 1.09002 * 109.52830 * 60.77106 * 5 4 3 7 7 C 1.53372 * 108.66698 * 301.32115 * 5 4 3 8 8 H 1.08997 * 109.23249 * 300.71879 * 7 5 4 9 9 C 1.52685 * 108.64793 * 181.47969 * 7 5 4 10 10 C 1.53228 * 108.99880 * 62.40892 * 9 7 5 11 11 C 1.53066 * 109.88262 * 299.59696 * 10 9 7 12 12 N 1.46243 * 110.93649 * 182.10960 * 5 4 3 13 13 C 1.34776 * 121.30507 * 354.79530 * 12 5 4 14 14 O 1.21584 * 120.00236 * 354.83750 * 13 12 5 15 15 N 1.34777 * 120.00181 * 174.84078 * 13 12 5 16 16 C 1.46498 * 120.00276 * 185.06056 * 15 13 12 17 17 C 1.50701 * 109.47395 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99660 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00296 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99991 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99660 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47060 * 89.99809 * 21 19 17 23 23 H 1.48494 * 109.46895 * 209.99823 * 21 19 17 24 24 H 1.48500 * 109.47179 * 330.00084 * 21 19 17 25 25 C 1.47070 * 110.99972 * 234.99618 * 2 1 3 26 26 H 1.08996 * 109.47524 * 56.03898 * 1 2 3 27 27 H 1.08997 * 109.46865 * 176.04765 * 1 2 3 28 28 H 1.09003 * 109.46931 * 296.04136 * 1 2 3 29 29 H 1.09002 * 109.36693 * 54.90389 * 3 2 1 30 30 H 1.08995 * 109.37167 * 295.27748 * 3 2 1 31 31 H 1.08993 * 109.60177 * 178.28916 * 4 3 2 32 32 H 1.09003 * 109.60531 * 298.61821 * 4 3 2 33 33 H 1.09000 * 109.55164 * 182.26790 * 9 7 5 34 34 H 1.09005 * 109.54755 * 302.46080 * 9 7 5 35 35 H 1.08997 * 109.40053 * 59.72321 * 10 9 7 36 36 H 1.09001 * 109.40258 * 179.55076 * 10 9 7 37 37 H 1.08997 * 109.50477 * 173.32064 * 11 10 9 38 38 H 1.08998 * 109.49936 * 293.39382 * 11 10 9 39 39 H 0.97004 * 120.00148 * 5.06490 * 15 13 12 40 40 H 1.09005 * 109.47353 * 300.00113 * 16 15 13 41 41 H 1.09001 * 109.46879 * 60.00245 * 16 15 13 42 42 H 0.97004 * 120.00024 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.56360 * 305.40817 * 25 2 1 44 44 H 1.08999 * 109.56863 * 65.76021 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9948 1.3698 0.0000 4 6 3.5222 1.3474 0.1233 5 6 4.0988 0.5460 -1.0429 6 1 3.8231 1.0223 -1.9838 7 6 3.5158 -0.8720 -0.9999 8 1 3.7751 -1.3381 -0.0494 9 6 4.1204 -1.6832 -2.1434 10 6 5.6353 -1.7846 -1.9367 11 6 6.2547 -0.3849 -1.9310 12 7 5.5548 0.4526 -0.9435 13 6 6.2350 1.1116 0.0154 14 8 5.6504 1.8739 0.7606 15 7 7.5633 0.9258 0.1481 16 6 8.2837 1.5548 1.2579 17 6 9.7443 1.1925 1.1783 18 1 10.1003 0.5569 0.3809 19 6 10.6262 1.6725 2.1232 20 7 11.9007 1.3559 2.0540 21 14 10.0102 2.7713 3.5026 22 1 9.6108 1.9335 4.6619 23 1 11.0914 3.7024 3.9139 24 1 8.8388 3.5512 3.0286 25 6 1.9961 -0.7876 -1.1247 26 1 -0.3634 0.5740 -0.8523 27 1 -0.3633 -1.0252 -0.0708 28 1 -0.3633 0.4512 0.9234 29 1 1.5723 1.9191 0.8414 30 1 1.7144 1.8646 -0.9298 31 1 3.9066 2.3668 0.0920 32 1 3.8062 0.8781 1.0653 33 1 3.6856 -2.6827 -2.1512 34 1 3.9126 -1.1877 -3.0918 35 1 5.8387 -2.2745 -0.9845 36 1 6.0728 -2.3696 -2.7456 37 1 7.3097 -0.4548 -1.6663 38 1 6.1567 0.0604 -2.9210 39 1 8.0423 0.3756 -0.4912 40 1 8.1743 2.6375 1.1949 41 1 7.8726 1.2025 2.2040 42 1 12.5213 1.6939 2.7186 43 1 1.5713 -1.7911 -1.0983 44 1 1.7332 -0.3027 -2.0648 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336582873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:33 Heat of formation + Delta-G solvation = -37.213389 kcal Electronic energy + Delta-G solvation = -23378.838151 eV Core-core repulsion = 20137.275910 eV Total energy + Delta-G solvation = -3241.562241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.90626 -39.76816 -37.66273 -36.31956 -34.61421 -34.09939 -33.19489 -31.14215 -29.76204 -27.60169 -26.24034 -24.54767 -24.00998 -23.46802 -21.85045 -21.07729 -20.72141 -19.29921 -18.22856 -17.47941 -16.77730 -16.52295 -16.22960 -16.11342 -15.66333 -15.46651 -15.38298 -15.12755 -14.75627 -14.34851 -14.16783 -13.91299 -13.78230 -13.69829 -13.25579 -13.15157 -12.98453 -12.70672 -12.56979 -12.28128 -12.19324 -11.92487 -11.88776 -11.79094 -11.65859 -11.53825 -11.15347 -10.91504 -10.36121 -9.98722 -9.37610 -9.21412 -8.40087 -6.46665 1.32900 1.34599 1.48489 1.75565 2.22131 2.28661 2.95534 2.97096 3.10131 3.69765 3.77326 3.81920 4.05024 4.12508 4.15481 4.25873 4.37979 4.42082 4.54545 4.57336 4.63460 4.71063 4.75295 4.75756 4.84651 4.86749 4.95528 5.04038 5.05092 5.06076 5.09218 5.19989 5.25205 5.27104 5.39969 5.49764 5.58909 5.76199 5.98129 6.13497 6.18603 6.21880 6.54459 7.11482 7.20586 7.69610 8.74705 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024684 B = 0.004404 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.064207 B = 6355.805876 C = 7227.194696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.568 5.568 3 C 0.061 3.939 4 C -0.095 4.095 5 C 0.165 3.835 6 H 0.077 0.923 7 C -0.093 4.093 8 H 0.054 0.946 9 C -0.103 4.103 10 C -0.129 4.129 11 C 0.102 3.898 12 N -0.625 5.625 13 C 0.695 3.305 14 O -0.627 6.627 15 N -0.726 5.726 16 C 0.254 3.746 17 C -0.545 4.545 18 H 0.057 0.943 19 C 0.029 3.971 20 N -0.930 5.930 21 Si 0.937 3.063 22 H -0.265 1.265 23 H -0.271 1.271 24 H -0.262 1.262 25 C 0.071 3.929 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.400 0.600 40 H 0.009 0.991 41 H 0.006 0.994 42 H 0.273 0.727 43 H 0.094 0.906 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.919 -6.629 -11.568 25.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.293 5.293 3 C -0.067 4.067 4 C -0.133 4.133 5 C 0.062 3.938 6 H 0.094 0.906 7 C -0.113 4.113 8 H 0.073 0.927 9 C -0.141 4.141 10 C -0.167 4.167 11 C -0.020 4.020 12 N -0.362 5.362 13 C 0.397 3.603 14 O -0.509 6.509 15 N -0.382 5.382 16 C 0.130 3.870 17 C -0.583 4.583 18 H 0.076 0.924 19 C -0.172 4.172 20 N -0.569 5.569 21 Si 0.761 3.239 22 H -0.190 1.190 23 H -0.196 1.196 24 H -0.186 1.186 25 C -0.057 4.057 26 H 0.051 0.949 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.237 0.763 40 H 0.027 0.973 41 H 0.024 0.976 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.972 -6.279 -10.500 25.148 hybrid contribution 0.483 0.764 0.054 0.905 sum -21.489 -5.515 -10.446 24.521 Atomic orbital electron populations 1.22362 0.85714 1.02711 1.01151 1.61706 1.08922 1.13618 1.45102 1.22151 0.94548 0.89262 1.00746 1.21768 0.93432 1.00671 0.97410 1.21071 0.77526 0.96640 0.98608 0.90564 1.21524 0.95066 0.94759 0.99934 0.92725 1.21464 0.94287 1.00855 0.97517 1.21889 0.96484 0.95280 1.03034 1.21911 0.96245 0.91598 0.92245 1.47231 1.07148 1.50367 1.31496 1.16207 0.81851 0.80926 0.81348 1.90850 1.68267 1.42540 1.49285 1.45394 1.06299 1.54616 1.31905 1.18901 0.90278 0.92579 0.85278 1.21257 0.91332 1.32353 1.13358 0.92441 1.25557 0.94709 0.97018 0.99902 1.69975 1.03675 1.46133 1.37137 0.85857 0.78718 0.79585 0.79728 1.19032 1.19619 1.18635 1.22042 0.93165 0.98876 0.91568 0.94914 0.90180 0.91484 0.90888 0.94067 0.91582 0.93869 0.89605 0.90088 0.93025 0.87857 0.90824 0.89382 0.76263 0.97305 0.97644 0.91805 0.88819 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.63 127.69 1.23 1.66 16 2 N -0.57 -11.96 4.88 -922.52 -4.50 -16.47 16 3 C 0.06 1.46 5.46 86.42 0.47 1.93 16 4 C -0.09 -2.96 3.84 30.61 0.12 -2.85 16 5 C 0.17 4.36 2.65 45.10 0.12 4.48 16 6 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 7 C -0.09 -1.94 2.14 -10.87 -0.02 -1.97 16 8 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 9 C -0.10 -1.53 5.30 30.57 0.16 -1.37 16 10 C -0.13 -2.24 6.05 30.69 0.19 -2.05 16 11 C 0.10 2.30 6.42 86.27 0.55 2.86 16 12 N -0.63 -19.20 2.96 -814.15 -2.41 -21.61 16 13 C 0.69 28.69 8.20 179.05 1.47 30.15 16 14 O -0.63 -29.94 12.16 -3.98 -0.05 -29.99 16 15 N -0.73 -31.53 5.47 -482.30 -2.64 -34.17 16 16 C 0.25 13.10 4.50 85.63 0.39 13.49 16 17 C -0.55 -30.97 9.83 25.60 0.25 -30.72 16 18 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 19 C 0.03 1.64 5.47 84.66 0.46 2.11 16 20 N -0.93 -56.25 13.96 21.45 0.30 -55.95 16 21 Si 0.94 45.20 27.47 68.60 1.88 47.08 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.26 -12.65 6.54 99.48 0.65 -12.00 16 25 C 0.07 1.23 4.89 86.18 0.42 1.65 16 26 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.08 0.99 8.02 -2.39 -0.02 0.97 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.73 8.13 -2.39 -0.02 1.71 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 2.43 6.51 -2.39 -0.02 2.42 16 32 H 0.04 1.67 7.23 -2.39 -0.02 1.65 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.79 5.61 -2.39 -0.01 1.78 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.40 15.49 5.82 -92.71 -0.54 14.95 16 40 H 0.01 0.49 7.20 -2.38 -0.02 0.47 16 41 H 0.01 0.30 7.57 -2.39 -0.02 0.28 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.09 1.31 8.04 -2.39 -0.02 1.29 16 44 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -70.45 331.87 -1.23 -71.68 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.38 Total: 20.05 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 5.81 Total: 19.38 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -9.25 Total: -128.20 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.05 Total: -29.99 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Total: -70.45 -1.23 -71.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336582873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.470 kcal (2) G-P(sol) polarization free energy of solvation -70.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds