Wall clock time and date at job start Tue Mar 31 2020 05:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47017 * 2 1 4 4 C 1.52996 * 109.47572 * 239.99757 * 2 1 3 5 5 C 1.50704 * 109.47078 * 119.99670 * 2 1 3 6 6 N 1.30871 * 125.77632 * 60.00113 * 5 2 1 7 7 C 1.35463 * 105.89906 * 180.02562 * 6 5 2 8 8 N 1.31443 * 126.90979 * 180.02562 * 7 6 5 9 9 C 1.46506 * 120.00041 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46812 * 119.99912 * 9 8 7 11 11 C 1.53006 * 109.47417 * 299.99847 * 10 9 8 12 12 C 1.53001 * 109.47338 * 60.00155 * 10 9 8 13 13 C 1.53003 * 109.46869 * 180.02562 * 10 9 8 14 14 C 1.50703 * 109.47218 * 180.02562 * 13 10 9 15 15 H 1.08005 * 119.99798 * 0.02562 * 14 13 10 16 16 C 1.37870 * 120.00168 * 180.02562 * 14 13 10 17 17 N 1.31519 * 120.00179 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00170 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46691 * 90.00169 * 18 16 14 20 20 H 1.48496 * 109.47487 * 210.00096 * 18 16 14 21 21 H 1.48504 * 109.46910 * 330.00639 * 18 16 14 22 22 N 1.36806 * 106.18413 * 359.97438 * 7 6 5 23 23 H 0.96993 * 125.56106 * 180.26783 * 22 7 6 24 24 O 1.21373 * 108.87535 * 0.02562 * 22 7 6 25 25 H 1.09003 * 109.47025 * 299.99862 * 1 2 3 26 26 H 1.08995 * 109.46929 * 60.00361 * 1 2 3 27 27 H 1.09003 * 109.46773 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47189 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47120 * 299.99612 * 3 2 1 30 30 H 1.09001 * 109.47468 * 59.99796 * 3 2 1 31 31 H 1.09003 * 109.46569 * 300.00064 * 4 2 1 32 32 H 1.08997 * 109.46882 * 59.99238 * 4 2 1 33 33 H 1.08993 * 109.47393 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.47148 * 239.99481 * 9 8 7 35 35 H 1.08998 * 109.46975 * 0.02562 * 9 8 7 36 36 H 1.08999 * 109.46544 * 59.99811 * 11 10 9 37 37 H 1.09000 * 109.47268 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.47051 * 300.00571 * 11 10 9 39 39 H 1.08998 * 109.46987 * 60.00094 * 12 10 9 40 40 H 1.08998 * 109.46934 * 179.97438 * 12 10 9 41 41 H 1.08999 * 109.46896 * 299.99799 * 12 10 9 42 42 H 1.08999 * 109.47066 * 299.99554 * 13 10 9 43 43 H 1.08998 * 109.47001 * 60.00355 * 13 10 9 44 44 H 0.96997 * 120.00417 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0324 -0.7104 1.2305 6 7 1.7869 -1.9558 1.5488 7 6 2.4282 -2.1723 2.7222 8 7 2.4555 -3.2907 3.4122 9 6 3.2026 -3.3569 4.6708 10 6 2.2474 -3.7095 5.8128 11 6 1.1621 -2.6362 5.9197 12 6 1.5974 -5.0661 5.5336 13 6 3.0275 -3.7780 7.1272 14 6 2.0868 -4.1258 8.2521 15 1 1.0376 -4.2828 8.0496 16 6 2.5656 -4.2437 9.5396 17 7 1.7447 -4.5478 10.5212 18 14 4.3804 -3.9729 9.8898 19 1 4.6164 -2.5396 10.1983 20 1 4.7898 -4.8031 11.0510 21 1 5.1776 -4.3606 8.6984 22 7 3.0426 -0.9931 3.0442 23 1 3.5850 -0.8367 3.8329 24 8 2.8021 -0.1761 2.1794 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6768 -1.7489 -1.2490 32 1 1.6767 -0.2075 -2.1391 33 1 3.1301 -0.7216 -1.2489 34 1 3.9757 -4.1215 4.5946 35 1 3.6653 -2.3903 4.8699 36 1 0.6065 -2.5870 4.9833 37 1 0.4814 -2.8877 6.7331 38 1 1.6253 -1.6698 6.1186 39 1 2.3705 -5.8306 5.4575 40 1 0.9173 -5.3174 6.3475 41 1 1.0416 -5.0168 4.5973 42 1 3.8008 -4.5423 7.0514 43 1 3.4902 -2.8113 7.3259 44 1 2.0815 -4.6303 11.4271 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340932436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:56 Heat of formation + Delta-G solvation = 83.518238 kcal Electronic energy + Delta-G solvation = -22646.788695 eV Core-core repulsion = 19410.461770 eV Total energy + Delta-G solvation = -3236.326925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.18540 -37.93678 -37.54792 -35.69371 -33.60852 -32.23041 -30.80766 -27.87962 -27.76658 -27.57616 -26.31499 -26.02312 -24.37586 -22.95502 -21.94982 -19.57752 -19.51575 -18.02948 -17.68213 -16.73412 -16.06857 -15.47852 -15.01638 -14.60682 -14.26940 -14.07973 -14.04650 -13.50477 -12.88477 -12.75067 -12.69310 -12.54387 -12.23362 -12.14146 -12.10826 -11.93403 -11.65457 -11.57102 -11.17134 -11.07780 -10.94234 -10.86389 -10.70028 -10.48962 -10.38145 -9.82759 -9.69892 -9.45623 -9.03601 -8.87682 -8.48473 -7.52212 -5.98267 -3.94358 1.01537 1.92800 3.04247 3.15653 3.31599 3.39752 3.43306 3.66195 4.32075 4.36894 4.39089 4.49053 4.87951 5.10888 5.16008 5.28987 5.33587 5.35281 5.39439 5.41449 5.50064 5.63931 5.74783 5.79249 5.82363 5.88327 5.90948 6.11106 6.14043 6.38953 6.45842 6.51600 6.69849 6.76376 6.87409 7.12641 7.20197 7.25614 7.38375 7.49710 7.85617 8.15354 8.36875 8.62635 9.08091 9.64473 11.14938 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034759 B = 0.003430 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.347149 B = 8161.944887 C = 8339.969721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.026 3.974 3 C -0.151 4.151 4 C -0.141 4.141 5 C 0.297 3.703 6 N -0.469 5.469 7 C 0.463 3.537 8 N -0.535 5.535 9 C 0.074 3.926 10 C -0.044 4.044 11 C -0.124 4.124 12 C -0.117 4.117 13 C -0.004 4.004 14 C -0.506 4.506 15 H 0.078 0.922 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.875 3.125 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.266 1.266 22 N -0.616 5.616 23 H 0.463 0.537 24 O -0.049 6.049 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.018 0.982 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.032 0.968 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.006 0.994 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.517 13.543 -24.258 27.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.024 3.976 3 C -0.209 4.209 4 C -0.199 4.199 5 C 0.075 3.925 6 N -0.210 5.210 7 C 0.099 3.901 8 N -0.275 5.275 9 C -0.056 4.056 10 C -0.044 4.044 11 C -0.181 4.181 12 C -0.175 4.175 13 C -0.042 4.042 14 C -0.544 4.544 15 H 0.096 0.904 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.703 3.297 19 H -0.206 1.206 20 H -0.215 1.215 21 H -0.191 1.191 22 N -0.308 5.308 23 H 0.317 0.683 24 O -0.046 6.046 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.036 0.964 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.024 0.976 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.965 12.210 -24.221 27.142 hybrid contribution 2.164 1.325 1.645 3.024 sum 3.129 13.535 -22.577 26.508 Atomic orbital electron populations 1.21949 0.90627 1.04247 1.03173 1.19420 0.97224 0.94807 0.86176 1.21982 1.02111 0.93154 1.03604 1.21937 1.01709 1.01635 0.94613 1.27620 0.85900 0.88673 0.90334 1.72171 1.24882 1.12322 1.11645 1.22957 0.90862 0.84554 0.91679 1.72982 1.28552 1.15322 1.10656 1.22073 0.96105 0.98641 0.88824 1.20445 0.94768 0.96063 0.93154 1.21708 0.98849 0.97029 1.00553 1.21594 1.00159 0.95241 1.00476 1.19654 0.96024 0.95826 0.92695 1.21133 0.96338 1.46464 0.90429 0.90383 1.25015 0.97230 0.94976 0.96371 1.69909 1.34797 1.49561 1.00253 0.86849 0.86714 0.78165 0.77952 1.20572 1.21481 1.19120 1.44179 1.57165 1.08316 1.21089 0.68266 1.84222 1.62041 1.30922 1.27376 0.91789 0.90370 0.90518 0.91525 0.90432 0.91424 0.90554 0.90370 0.91932 0.90589 0.96380 0.94570 0.91275 0.94925 0.94146 0.92032 0.93462 0.96581 0.97586 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.46 37.16 0.31 -0.56 16 2 C 0.03 0.18 0.99 -155.66 -0.15 0.02 16 3 C -0.15 -0.73 8.03 37.16 0.30 -0.43 16 4 C -0.14 -0.80 8.46 37.16 0.31 -0.49 16 5 C 0.30 3.28 6.52 -12.86 -0.08 3.19 16 6 N -0.47 -6.90 11.56 -11.69 -0.14 -7.04 16 7 C 0.46 7.57 8.84 -322.49 -2.85 4.72 16 8 N -0.54 -10.00 9.14 -62.28 -0.57 -10.57 16 9 C 0.07 1.38 5.29 -4.04 -0.02 1.36 16 10 C -0.04 -0.93 0.60 -154.50 -0.09 -1.02 16 11 C -0.12 -2.59 8.06 37.16 0.30 -2.29 16 12 C -0.12 -2.52 8.06 37.16 0.30 -2.22 16 13 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 14 C -0.51 -14.39 8.20 -34.44 -0.28 -14.67 16 15 H 0.08 2.38 5.92 -52.48 -0.31 2.07 16 16 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 17 N -0.91 -28.23 13.96 55.43 0.77 -27.46 16 18 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 22 N -0.62 -8.16 6.78 29.62 0.20 -7.96 16 23 H 0.46 5.41 7.37 -40.82 -0.30 5.11 16 24 O -0.05 -0.56 10.65 18.82 0.20 -0.36 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.02 0.30 6.19 -51.93 -0.32 -0.02 16 36 H 0.04 0.72 7.60 -51.93 -0.39 0.33 16 37 H 0.07 1.58 6.62 -51.93 -0.34 1.23 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.42 6.62 -51.93 -0.34 1.08 16 41 H 0.05 0.98 7.60 -51.93 -0.39 0.58 16 42 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 43 H 0.01 0.14 7.57 -51.93 -0.39 -0.25 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -33.82 349.12 -8.50 -42.32 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.42 Total: -0.81 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.15 Total: -10.78 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.27 Total: -53.02 kcal Atomic # 8 Polarization: -0.56 SS G_CDS: 0.20 Total: -0.36 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.82 -8.50 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340932436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.839 kcal (2) G-P(sol) polarization free energy of solvation -33.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds