Wall clock time and date at job start Tue Mar 31 2020 05:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47017 * 2 1 4 4 C 1.52996 * 109.47572 * 239.99757 * 2 1 3 5 5 C 1.50704 * 109.47078 * 119.99670 * 2 1 3 6 6 N 1.30871 * 125.77632 * 60.00113 * 5 2 1 7 7 C 1.35463 * 105.89906 * 180.02562 * 6 5 2 8 8 N 1.31443 * 126.90979 * 180.02562 * 7 6 5 9 9 C 1.46506 * 120.00041 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46812 * 119.99912 * 9 8 7 11 11 C 1.53006 * 109.47417 * 299.99847 * 10 9 8 12 12 C 1.53001 * 109.47338 * 60.00155 * 10 9 8 13 13 C 1.53003 * 109.46869 * 180.02562 * 10 9 8 14 14 C 1.50703 * 109.47218 * 180.02562 * 13 10 9 15 15 H 1.08005 * 119.99798 * 0.02562 * 14 13 10 16 16 C 1.37870 * 120.00168 * 180.02562 * 14 13 10 17 17 N 1.31519 * 120.00179 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00170 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46691 * 90.00169 * 18 16 14 20 20 H 1.48496 * 109.47487 * 210.00096 * 18 16 14 21 21 H 1.48504 * 109.46910 * 330.00639 * 18 16 14 22 22 N 1.36806 * 106.18413 * 359.97438 * 7 6 5 23 23 H 0.96993 * 125.56106 * 180.26783 * 22 7 6 24 24 O 1.21373 * 108.87535 * 0.02562 * 22 7 6 25 25 H 1.09003 * 109.47025 * 299.99862 * 1 2 3 26 26 H 1.08995 * 109.46929 * 60.00361 * 1 2 3 27 27 H 1.09003 * 109.46773 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47189 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47120 * 299.99612 * 3 2 1 30 30 H 1.09001 * 109.47468 * 59.99796 * 3 2 1 31 31 H 1.09003 * 109.46569 * 300.00064 * 4 2 1 32 32 H 1.08997 * 109.46882 * 59.99238 * 4 2 1 33 33 H 1.08993 * 109.47393 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.47148 * 239.99481 * 9 8 7 35 35 H 1.08998 * 109.46975 * 0.02562 * 9 8 7 36 36 H 1.08999 * 109.46544 * 59.99811 * 11 10 9 37 37 H 1.09000 * 109.47268 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.47051 * 300.00571 * 11 10 9 39 39 H 1.08998 * 109.46987 * 60.00094 * 12 10 9 40 40 H 1.08998 * 109.46934 * 179.97438 * 12 10 9 41 41 H 1.08999 * 109.46896 * 299.99799 * 12 10 9 42 42 H 1.08999 * 109.47066 * 299.99554 * 13 10 9 43 43 H 1.08998 * 109.47001 * 60.00355 * 13 10 9 44 44 H 0.96997 * 120.00417 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0324 -0.7104 1.2305 6 7 1.7869 -1.9558 1.5488 7 6 2.4282 -2.1723 2.7222 8 7 2.4555 -3.2907 3.4122 9 6 3.2026 -3.3569 4.6708 10 6 2.2474 -3.7095 5.8128 11 6 1.1621 -2.6362 5.9197 12 6 1.5974 -5.0661 5.5336 13 6 3.0275 -3.7780 7.1272 14 6 2.0868 -4.1258 8.2521 15 1 1.0376 -4.2828 8.0496 16 6 2.5656 -4.2437 9.5396 17 7 1.7447 -4.5478 10.5212 18 14 4.3804 -3.9729 9.8898 19 1 4.6164 -2.5396 10.1983 20 1 4.7898 -4.8031 11.0510 21 1 5.1776 -4.3606 8.6984 22 7 3.0426 -0.9931 3.0442 23 1 3.5850 -0.8367 3.8329 24 8 2.8021 -0.1761 2.1794 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6768 -1.7489 -1.2490 32 1 1.6767 -0.2075 -2.1391 33 1 3.1301 -0.7216 -1.2489 34 1 3.9757 -4.1215 4.5946 35 1 3.6653 -2.3903 4.8699 36 1 0.6065 -2.5870 4.9833 37 1 0.4814 -2.8877 6.7331 38 1 1.6253 -1.6698 6.1186 39 1 2.3705 -5.8306 5.4575 40 1 0.9173 -5.3174 6.3475 41 1 1.0416 -5.0168 4.5973 42 1 3.8008 -4.5423 7.0514 43 1 3.4902 -2.8113 7.3259 44 1 2.0815 -4.6303 11.4271 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340932436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:55 Heat of formation + Delta-G solvation = 61.881312 kcal Electronic energy + Delta-G solvation = -22647.726942 eV Core-core repulsion = 19410.461770 eV Total energy + Delta-G solvation = -3237.265172 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.26092 -39.18799 -38.50816 -36.96548 -34.97076 -34.14381 -32.08054 -29.67234 -28.26830 -28.22170 -28.02928 -27.43749 -25.37831 -24.60840 -23.30777 -20.67218 -20.46018 -19.36261 -19.04123 -18.88680 -16.97307 -16.45418 -16.38047 -15.97347 -15.74931 -15.24764 -15.06612 -14.75575 -14.55709 -14.28606 -13.96524 -13.51993 -13.22145 -13.07925 -12.90479 -12.85325 -12.69496 -12.60164 -12.58774 -12.40666 -12.37733 -12.29026 -12.16046 -11.85497 -11.78899 -11.57940 -11.47020 -11.21908 -11.00220 -10.72706 -10.32833 -8.76413 -8.23792 -6.25260 0.02577 0.96792 1.33626 1.36842 1.48063 1.85262 2.24062 2.37859 2.61152 3.10532 3.61070 3.83722 3.84458 3.96184 4.09042 4.18223 4.23984 4.47522 4.68970 4.74803 4.76898 4.78146 4.86354 4.86905 4.90174 4.94675 4.96863 4.98363 4.99591 5.06223 5.08402 5.24657 5.28352 5.33764 5.36633 5.37253 5.42342 5.48044 5.57160 5.64413 5.74863 6.37542 6.80963 7.01760 7.24425 7.36988 8.92686 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034759 B = 0.003430 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.347149 B = 8161.944887 C = 8339.969721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.025 3.975 3 C -0.148 4.148 4 C -0.139 4.139 5 C 0.314 3.686 6 N -0.508 5.508 7 C 0.468 3.532 8 N -0.581 5.581 9 C 0.086 3.914 10 C -0.045 4.045 11 C -0.111 4.111 12 C -0.107 4.107 13 C 0.001 3.999 14 C -0.507 4.507 15 H 0.040 0.960 16 C 0.001 3.999 17 N -0.955 5.955 18 Si 0.944 3.056 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.248 1.248 22 N -0.608 5.608 23 H 0.470 0.530 24 O -0.037 6.037 25 H 0.057 0.943 26 H 0.110 0.890 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.032 0.968 41 H 0.052 0.948 42 H 0.017 0.983 43 H 0.017 0.983 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 16.003 -26.717 31.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.023 3.977 3 C -0.206 4.206 4 C -0.197 4.197 5 C 0.094 3.906 6 N -0.250 5.250 7 C 0.104 3.896 8 N -0.324 5.324 9 C -0.045 4.045 10 C -0.046 4.046 11 C -0.168 4.168 12 C -0.165 4.165 13 C -0.037 4.037 14 C -0.545 4.545 15 H 0.058 0.942 16 C -0.195 4.195 17 N -0.597 5.597 18 Si 0.768 3.232 19 H -0.192 1.192 20 H -0.213 1.213 21 H -0.172 1.172 22 N -0.297 5.297 23 H 0.326 0.674 24 O -0.034 6.034 25 H 0.076 0.924 26 H 0.128 0.872 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.035 0.965 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.769 14.715 -26.711 30.621 hybrid contribution 1.476 0.672 2.257 2.779 sum 4.245 15.387 -24.454 29.202 Atomic orbital electron populations 1.21983 0.89947 1.03450 1.04497 1.19843 0.97599 0.95830 0.84463 1.22016 1.02200 0.91476 1.04863 1.21967 1.01705 1.00893 0.95095 1.28748 0.83612 0.87844 0.90411 1.72221 1.26698 1.14250 1.11805 1.23151 0.90032 0.84721 0.91717 1.72957 1.31254 1.16843 1.11373 1.21773 0.95083 0.99501 0.88118 1.20392 0.95185 0.95810 0.93190 1.21540 0.98313 0.97450 0.99490 1.21468 0.99684 0.95843 0.99463 1.19580 0.95376 0.96062 0.92702 1.21381 0.95538 1.45618 0.91995 0.94195 1.25955 1.02500 0.94888 0.96130 1.70071 1.37331 1.51413 1.00840 0.85744 0.80462 0.78638 0.78310 1.19228 1.21350 1.17159 1.44173 1.56309 1.07861 1.21373 0.67395 1.84269 1.61739 1.30323 1.27107 0.92366 0.87170 0.92384 0.91422 0.87664 0.91768 0.92346 0.87248 0.91974 0.90801 0.94542 0.94073 0.94321 0.93789 0.93855 0.94912 0.92925 0.96420 0.96460 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.46 71.98 0.61 -0.78 16 2 C 0.02 0.27 0.99 -52.93 -0.05 0.22 16 3 C -0.15 -0.88 8.03 71.98 0.58 -0.30 16 4 C -0.14 -1.20 8.46 71.98 0.61 -0.59 16 5 C 0.31 6.34 6.52 88.31 0.58 6.92 16 6 N -0.51 -14.46 11.56 -305.76 -3.53 -18.00 16 7 C 0.47 14.77 8.84 261.38 2.31 17.08 16 8 N -0.58 -21.35 9.14 -351.02 -3.21 -24.56 16 9 C 0.09 3.11 5.29 86.38 0.46 3.56 16 10 C -0.05 -1.92 0.60 -52.18 -0.03 -1.95 16 11 C -0.11 -4.67 8.06 71.98 0.58 -4.09 16 12 C -0.11 -4.73 8.06 71.98 0.58 -4.15 16 13 C 0.00 0.03 3.11 29.85 0.09 0.12 16 14 C -0.51 -29.57 8.20 25.60 0.21 -29.36 16 15 H 0.04 2.58 5.92 -2.91 -0.02 2.56 16 16 C 0.00 0.06 5.47 84.65 0.46 0.52 16 17 N -0.95 -61.22 13.96 21.45 0.30 -60.92 16 18 Si 0.94 45.13 27.47 68.60 1.88 47.01 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 22 N -0.61 -14.89 6.78 -60.45 -0.41 -15.29 16 23 H 0.47 9.88 7.37 -92.71 -0.68 9.20 16 24 O -0.04 -0.76 10.65 77.37 0.82 0.06 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 29 H 0.10 0.10 8.14 -2.38 -0.02 0.08 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.04 1.14 6.19 -2.39 -0.01 1.12 16 36 H 0.04 1.66 7.60 -2.39 -0.02 1.65 16 37 H 0.04 1.83 6.62 -2.39 -0.02 1.81 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.03 1.58 6.62 -2.39 -0.02 1.56 16 41 H 0.05 2.23 7.60 -2.39 -0.02 2.21 16 42 H 0.02 0.84 7.20 -2.39 -0.02 0.83 16 43 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 44 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -75.21 349.12 3.08 -72.13 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.24 Total: 12.36 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 6.98 Total: -12.79 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -6.85 Total: -118.78 kcal Atomic # 8 Polarization: -0.76 SS G_CDS: 0.82 Total: 0.06 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -75.21 3.08 -72.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340932436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.011 kcal (2) G-P(sol) polarization free energy of solvation -75.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds