Wall clock time and date at job start Tue Mar 31 2020 05:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.78657 * 2 1 4 4 C 1.54940 * 110.72501 * 123.24875 * 2 1 3 5 5 N 1.48538 * 103.22747 * 155.77253 * 4 2 1 6 6 C 1.46899 * 110.99939 * 200.27759 * 5 4 2 7 7 C 1.52998 * 117.50104 * 254.22895 * 6 5 4 8 8 C 1.52997 * 60.00015 * 252.51645 * 7 6 5 9 9 C 1.47903 * 105.81788 * 320.79431 * 5 4 2 10 10 C 1.53992 * 107.05893 * 25.33047 * 9 5 4 11 11 H 1.09003 * 110.30744 * 239.75586 * 10 9 5 12 12 N 1.46498 * 110.30830 * 117.69303 * 10 9 5 13 13 C 1.34771 * 120.00516 * 86.45182 * 12 10 9 14 14 O 1.21590 * 119.99520 * 0.27483 * 13 12 10 15 15 N 1.34774 * 120.00736 * 180.02562 * 13 12 10 16 16 C 1.46501 * 120.00529 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46948 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.46732 * 179.97438 * 17 16 15 19 19 H 1.08006 * 120.00018 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99800 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00373 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99796 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47186 * 59.99861 * 22 20 18 24 24 H 1.48500 * 109.46987 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47355 * 299.99510 * 22 20 18 26 26 H 1.08998 * 109.46816 * 183.25304 * 1 2 3 27 27 H 1.09001 * 109.47158 * 303.24908 * 1 2 3 28 28 H 1.08999 * 109.47181 * 63.25052 * 1 2 3 29 29 H 1.08993 * 110.66645 * 37.33777 * 4 2 1 30 30 H 1.09003 * 110.66498 * 274.20417 * 4 2 1 31 31 H 1.09000 * 115.54788 * 39.94405 * 6 5 4 32 32 H 1.09007 * 117.49380 * 0.02562 * 7 6 5 33 33 H 1.09002 * 117.49845 * 145.02090 * 7 6 5 34 34 H 1.09001 * 117.49241 * 252.51315 * 8 7 6 35 35 H 1.08992 * 117.51915 * 107.48627 * 8 7 6 36 36 H 1.08997 * 109.91391 * 265.97121 * 9 5 4 37 37 H 1.09000 * 109.91478 * 144.68285 * 9 5 4 38 38 H 0.97007 * 120.00139 * 266.45151 * 12 10 9 39 39 H 0.97002 * 119.99414 * 359.97438 * 15 13 12 40 40 H 1.08998 * 109.46689 * 299.99919 * 16 15 13 41 41 H 1.08998 * 109.46723 * 59.99526 * 16 15 13 42 42 H 1.08996 * 109.47147 * 299.99763 * 17 16 15 43 43 H 1.08996 * 109.47001 * 60.00280 * 17 16 15 44 44 H 0.97002 * 120.00481 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0783 -0.7945 1.2119 5 7 3.4319 -1.2092 0.7622 6 6 3.9213 -2.3497 1.5481 7 6 5.0073 -2.0755 2.5903 8 6 5.3568 -2.8159 1.2979 9 6 3.2893 -1.5709 -0.6648 10 6 2.0771 -0.7927 -1.2092 11 1 1.3215 -1.4833 -1.5839 12 7 2.4971 0.1250 -2.2710 13 6 2.5788 -0.3095 -3.5441 14 8 2.2990 -1.4620 -3.8122 15 7 2.9657 0.5347 -4.5209 16 6 3.0539 0.0625 -5.9049 17 6 3.5120 1.2102 -6.8071 18 6 3.6034 0.7242 -8.2307 19 1 3.3595 -0.3008 -8.4681 20 6 3.9993 1.5878 -9.2298 21 7 4.2967 2.8358 -8.9407 22 14 4.1118 0.9857 -10.9945 23 1 2.7783 0.5081 -11.4406 24 1 4.5566 2.0995 -11.8702 25 1 5.0895 -0.1291 -11.0758 26 1 -0.3633 -1.0260 0.0583 27 1 -0.3633 0.5634 0.8594 28 1 -0.3633 0.4625 -0.9177 29 1 1.4561 -1.6664 1.4136 30 1 2.1445 -0.1557 2.0926 31 1 3.1784 -3.1119 1.7833 32 1 5.3583 -1.0487 2.6931 33 1 4.9789 -2.6572 3.5117 34 1 5.5585 -3.8847 1.3690 35 1 5.9380 -2.2766 0.5500 36 1 3.1162 -2.6427 -0.7607 37 1 4.1887 -1.2870 -1.2114 38 1 2.7164 1.0456 -2.0577 39 1 3.1850 1.4552 -4.3076 40 1 3.7716 -0.7557 -5.9645 41 1 2.0751 -0.2881 -6.2322 42 1 2.7940 2.0281 -6.7474 43 1 4.4907 1.5611 -6.4799 44 1 4.5756 3.4433 -9.6436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343826784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:57 Heat of formation + Delta-G solvation = -10.137892 kcal Electronic energy + Delta-G solvation = -21859.039855 eV Core-core repulsion = 18618.651695 eV Total energy + Delta-G solvation = -3240.388160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23272 -38.93498 -36.76462 -34.78864 -33.62639 -32.74716 -32.05114 -29.71665 -28.00969 -26.01036 -24.62956 -22.75682 -22.38671 -21.11086 -20.98011 -20.32200 -20.06538 -17.85581 -16.96570 -16.48427 -16.21620 -15.46118 -15.04397 -14.94628 -14.50690 -14.16148 -13.81715 -13.64780 -13.34585 -13.24066 -13.07181 -12.69892 -12.46900 -12.24096 -12.08255 -11.74869 -11.44310 -11.30148 -11.17374 -10.99772 -10.92248 -10.65648 -10.63113 -10.34169 -10.27714 -9.90291 -9.52914 -9.25302 -8.99231 -8.68642 -8.46183 -8.22140 -6.07239 -4.09896 3.05040 3.32809 3.36440 3.40173 3.46634 3.59774 3.60903 4.24908 4.41202 4.46635 4.63102 4.66909 4.75413 4.79129 4.97498 5.08812 5.17421 5.20900 5.29760 5.32027 5.41113 5.43401 5.50847 5.61649 5.67152 5.76652 5.85323 5.90980 5.94133 5.98315 6.32027 6.42492 6.57555 6.69798 6.80566 6.83430 7.03493 7.28517 7.59335 7.65935 7.91967 8.28329 8.47245 8.94903 9.03433 9.54701 11.04428 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027014 B = 0.002805 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.238320 B = 9979.899386 C =10524.105652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.090 0.910 4 C 0.045 3.955 5 N -0.490 5.490 6 C -0.007 4.007 7 C -0.162 4.162 8 C -0.170 4.170 9 C 0.029 3.971 10 C 0.162 3.838 11 H 0.094 0.906 12 N -0.743 5.743 13 C 0.698 3.302 14 O -0.599 6.599 15 N -0.738 5.738 16 C 0.141 3.859 17 C 0.013 3.987 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.395 0.605 39 H 0.393 0.607 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.448 -5.513 24.406 25.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 H 0.108 0.892 4 C -0.083 4.083 5 N -0.214 5.214 6 C -0.116 4.116 7 C -0.200 4.200 8 C -0.207 4.207 9 C -0.100 4.100 10 C 0.055 3.945 11 H 0.112 0.888 12 N -0.399 5.399 13 C 0.398 3.602 14 O -0.478 6.478 15 N -0.392 5.392 16 C 0.018 3.982 17 C -0.024 4.024 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.229 0.771 39 H 0.226 0.774 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.260 -6.015 24.081 25.034 hybrid contribution -0.184 -0.054 -0.902 0.922 sum -3.444 -6.069 23.179 24.207 Atomic orbital electron populations 1.21769 0.93756 1.02192 1.02353 1.22371 0.96123 1.00108 0.93533 0.89197 1.23253 0.88696 0.98596 0.97768 1.64583 1.23359 1.31380 1.02103 1.22596 0.92144 0.95010 1.01900 1.23009 1.02070 1.01983 0.92894 1.23006 0.96994 1.00442 1.00293 1.23328 0.99573 0.98824 0.88272 1.21617 0.95351 0.91326 0.86255 0.88754 1.45195 1.74570 1.14256 1.05867 1.16093 0.78473 0.85179 0.80450 1.90883 1.57065 1.17479 1.82377 1.45536 1.71740 1.13466 1.08428 1.21579 1.00491 0.99076 0.77081 1.19316 0.96867 0.92648 0.93585 1.21022 1.45929 0.97186 0.91853 0.92285 1.24991 0.95134 0.94841 0.99318 1.69943 1.45709 1.04405 1.33330 0.86571 0.78622 0.78268 0.84063 1.20115 1.21264 1.20107 0.92439 0.92175 0.91898 0.93286 0.89713 0.89475 0.88175 0.88898 0.88721 0.88214 0.92931 0.89690 0.77090 0.77391 0.92838 0.92844 0.95991 0.95982 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.16 37.16 0.34 -0.75 16 2 C -0.10 -0.87 3.36 -88.76 -0.30 -1.17 16 3 H 0.09 0.74 7.74 -51.93 -0.40 0.34 16 4 C 0.04 0.37 6.00 -1.89 -0.01 0.36 16 5 N -0.49 -4.91 5.42 -222.50 -1.21 -6.11 16 6 C -0.01 -0.07 4.87 -67.72 -0.33 -0.40 16 7 C -0.16 -1.27 10.46 -26.73 -0.28 -1.55 16 8 C -0.17 -1.47 10.19 -26.73 -0.27 -1.75 16 9 C 0.03 0.34 6.27 -2.75 -0.02 0.32 16 10 C 0.16 1.87 2.88 -66.58 -0.19 1.68 16 11 H 0.09 1.27 7.35 -51.93 -0.38 0.89 16 12 N -0.74 -9.56 5.03 -57.35 -0.29 -9.84 16 13 C 0.70 12.29 8.56 -86.93 -0.74 11.54 16 14 O -0.60 -12.91 16.04 5.29 0.08 -12.82 16 15 N -0.74 -13.22 5.56 -65.23 -0.36 -13.58 16 16 C 0.14 3.06 5.61 -4.04 -0.02 3.04 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 19 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 22 Si 0.90 21.54 29.54 -169.99 -5.02 16.51 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H 0.06 0.44 8.10 -51.93 -0.42 0.01 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.39 7.78 -51.93 -0.40 -0.02 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.74 7.97 -51.93 -0.41 0.33 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.65 7.77 -51.93 -0.40 0.25 16 37 H 0.08 1.16 7.92 -51.93 -0.41 0.75 16 38 H 0.40 4.11 8.36 -40.82 -0.34 3.77 16 39 H 0.39 6.07 8.49 -40.82 -0.35 5.72 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -31.94 360.30 -10.72 -42.67 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.72 Total: 5.15 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -2.38 Total: -1.82 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -1.12 Total: -55.12 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.94 -10.72 -42.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343826784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.528 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds