Wall clock time and date at job start Tue Mar 31 2020 05:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.64762 * 2 1 4 4 C 1.54934 * 110.87869 * 236.73813 * 2 1 3 5 5 N 1.48539 * 103.22621 * 204.16003 * 4 2 1 6 6 C 1.46898 * 111.00208 * 159.72297 * 5 4 2 7 7 C 1.52997 * 117.50212 * 137.91121 * 6 5 4 8 8 C 1.52999 * 60.00361 * 252.51016 * 7 6 5 9 9 C 1.47897 * 105.82206 * 39.20511 * 5 4 2 10 10 C 1.53998 * 107.05723 * 334.67234 * 9 5 4 11 11 H 1.08992 * 110.39069 * 242.26287 * 10 9 5 12 12 N 1.46503 * 110.30580 * 120.13879 * 10 9 5 13 13 C 1.34774 * 120.00026 * 89.28706 * 12 10 9 14 14 O 1.21588 * 119.99818 * 359.97438 * 13 12 10 15 15 N 1.34779 * 120.00126 * 179.97438 * 13 12 10 16 16 C 1.46499 * 120.00049 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47088 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.46926 * 179.97438 * 17 16 15 19 19 H 1.07988 * 120.00237 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99761 * 179.97438 * 18 17 16 21 21 N 1.31522 * 120.00162 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00152 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47009 * 59.99892 * 22 20 18 24 24 H 1.48498 * 109.47451 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46757 * 299.99947 * 22 20 18 26 26 H 1.08996 * 109.47512 * 296.85249 * 1 2 3 27 27 H 1.09009 * 109.46526 * 56.85567 * 1 2 3 28 28 H 1.09000 * 109.47196 * 176.84467 * 1 2 3 29 29 H 1.08999 * 110.67292 * 322.59027 * 4 2 1 30 30 H 1.09001 * 110.66716 * 85.55832 * 4 2 1 31 31 H 1.09002 * 115.55098 * 283.62420 * 6 5 4 32 32 H 1.08999 * 117.50008 * 0.02562 * 7 6 5 33 33 H 1.08999 * 117.50095 * 145.01966 * 7 6 5 34 34 H 1.08997 * 117.50067 * 252.51124 * 8 7 6 35 35 H 1.09003 * 117.49798 * 107.48379 * 8 7 6 36 36 H 1.08998 * 109.92269 * 215.31489 * 9 5 4 37 37 H 1.09003 * 109.91698 * 94.02290 * 9 5 4 38 38 H 0.97004 * 120.00115 * 269.27642 * 12 10 9 39 39 H 0.96993 * 119.99632 * 359.97438 * 15 13 12 40 40 H 1.09000 * 109.47068 * 59.99768 * 16 15 13 41 41 H 1.09000 * 109.47028 * 300.00044 * 16 15 13 42 42 H 1.09000 * 109.47171 * 299.99894 * 17 16 15 43 43 H 1.09000 * 109.46903 * 59.99753 * 17 16 15 44 44 H 0.96993 * 119.99902 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0822 -0.7940 -1.2104 5 7 3.4360 -1.2051 -0.7582 6 6 3.9295 -2.3449 -1.5425 7 6 5.3943 -2.3180 -1.9833 8 6 4.2823 -2.0930 -3.0099 9 6 3.2921 -1.5662 0.6688 10 6 2.0770 -0.7906 1.2107 11 1 2.3849 -0.1066 2.0014 12 7 1.0619 -1.7210 1.7110 13 6 1.0956 -2.1282 2.9953 14 8 1.9688 -1.7238 3.7386 15 7 0.1615 -2.9838 3.4557 16 6 0.1985 -3.4269 4.8516 17 6 -0.9637 -4.3870 5.1129 18 6 -0.9253 -4.8433 6.5487 19 1 -0.1498 -4.4841 7.2088 20 6 -1.8808 -5.7186 7.0196 21 7 -2.8255 -6.1557 6.2158 22 14 -1.8337 -6.2836 8.7995 23 1 -1.9530 -5.1059 9.6960 24 1 -2.9616 -7.2157 9.0531 25 1 -0.5485 -6.9791 9.0641 26 1 -0.3634 0.4642 0.9168 27 1 -0.3633 0.5619 -0.8606 28 1 -0.3633 -1.0261 -0.0566 29 1 1.4624 -1.6675 -1.4127 30 1 2.1455 -0.1563 -2.0922 31 1 3.4980 -3.3130 -1.2877 32 1 5.9920 -1.4546 -1.6910 33 1 5.9270 -3.2683 -2.0184 34 1 4.0833 -2.8954 -3.7202 35 1 4.1483 -1.0815 -3.3932 36 1 4.1898 -1.2799 1.2167 37 1 3.1212 -2.6384 0.7651 38 1 0.3655 -2.0439 1.1179 39 1 -0.5352 -3.3061 2.8629 40 1 0.1110 -2.5623 5.5097 41 1 1.1418 -3.9374 5.0459 42 1 -1.9072 -3.8769 4.9185 43 1 -0.8757 -5.2515 4.4548 44 1 -3.4975 -6.7718 6.5470 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343826789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:59 Heat of formation + Delta-G solvation = -4.488790 kcal Electronic energy + Delta-G solvation = -22013.227826 eV Core-core repulsion = 18773.084630 eV Total energy + Delta-G solvation = -3240.143196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.37404 -38.90515 -36.83048 -34.79524 -33.57042 -32.76283 -31.95834 -29.71911 -28.06145 -26.21462 -24.67161 -22.60006 -22.47626 -21.27575 -20.68475 -20.66458 -19.73964 -18.27111 -16.70615 -16.46432 -16.09430 -15.37127 -15.18138 -15.05543 -14.49326 -14.29549 -14.13585 -13.63950 -13.47212 -13.16100 -12.97442 -12.78223 -12.30444 -12.25281 -12.01509 -11.78597 -11.46917 -11.19414 -11.15091 -11.00706 -10.89841 -10.65471 -10.64010 -10.33631 -10.27964 -9.93124 -9.55360 -9.27592 -9.10944 -8.66852 -8.47447 -8.24384 -6.09036 -4.11708 3.00129 3.31686 3.35304 3.39082 3.46225 3.55824 3.64837 4.24301 4.39901 4.46916 4.61578 4.68025 4.69484 4.77054 5.00453 5.11156 5.17237 5.22131 5.28010 5.32297 5.37780 5.41562 5.50554 5.56277 5.68586 5.84753 5.88117 5.90410 5.92751 5.98889 6.31031 6.40310 6.43758 6.72572 6.78680 6.84304 7.00555 7.23956 7.56880 7.63413 7.90142 8.26135 8.43576 8.93038 9.00805 9.52998 11.02634 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027993 B = 0.002838 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.997737 B = 9863.032218 C =10182.267563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.095 0.905 4 C 0.042 3.958 5 N -0.490 5.490 6 C -0.006 4.006 7 C -0.162 4.162 8 C -0.171 4.171 9 C 0.029 3.971 10 C 0.158 3.842 11 H 0.100 0.900 12 N -0.747 5.747 13 C 0.698 3.302 14 O -0.596 6.596 15 N -0.739 5.739 16 C 0.140 3.860 17 C 0.014 3.986 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.393 0.607 39 H 0.392 0.608 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.022 0.978 43 H 0.021 0.979 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.138 10.396 -19.941 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.113 0.887 4 C -0.085 4.085 5 N -0.214 5.214 6 C -0.115 4.115 7 C -0.200 4.200 8 C -0.208 4.208 9 C -0.100 4.100 10 C 0.051 3.949 11 H 0.118 0.882 12 N -0.405 5.405 13 C 0.398 3.602 14 O -0.475 6.475 15 N -0.392 5.392 16 C 0.018 3.982 17 C -0.024 4.024 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.229 0.771 39 H 0.225 0.775 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.166 11.044 -19.271 24.427 hybrid contribution -1.270 -1.488 0.473 2.012 sum 8.896 9.557 -18.798 22.887 Atomic orbital electron populations 1.21696 0.93938 1.01784 1.02504 1.22387 0.96190 1.00046 0.93665 0.88696 1.23248 0.88958 0.98451 0.97861 1.64592 1.23089 1.31525 1.02187 1.22621 0.99314 0.93673 0.95906 1.23011 0.91097 1.03295 1.02551 1.22993 1.03586 1.03013 0.91206 1.23376 0.99185 0.99258 0.88175 1.21536 0.86853 0.90360 0.96111 0.88190 1.45395 1.33229 1.51150 1.10729 1.16101 0.82622 0.79795 0.81721 1.90889 1.38628 1.61335 1.56647 1.45542 1.30586 1.48450 1.14646 1.21585 1.00992 0.98031 0.77632 1.19315 0.92061 0.93513 0.97500 1.21020 1.12414 1.27129 0.95436 0.92258 1.24997 0.95255 0.96060 0.97977 1.69947 1.15126 1.32823 1.35520 0.86564 0.77596 0.78613 0.84722 1.20085 1.21261 1.20104 0.91654 0.92143 0.92653 0.93494 0.89983 0.89474 0.88116 0.88814 0.88801 0.88378 0.89496 0.92762 0.77126 0.77516 0.92775 0.92828 0.96003 0.96048 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.49 37.16 0.32 -0.76 16 2 C -0.10 -0.88 3.62 -88.76 -0.32 -1.20 16 3 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.04 0.35 5.81 -1.90 -0.01 0.34 16 5 N -0.49 -4.86 5.41 -222.49 -1.20 -6.06 16 6 C -0.01 -0.06 4.93 -67.71 -0.33 -0.39 16 7 C -0.16 -1.33 10.46 -26.73 -0.28 -1.61 16 8 C -0.17 -1.28 10.22 -26.73 -0.27 -1.55 16 9 C 0.03 0.34 6.50 -2.75 -0.02 0.32 16 10 C 0.16 1.82 3.22 -66.57 -0.21 1.60 16 11 H 0.10 1.34 7.56 -51.93 -0.39 0.95 16 12 N -0.75 -9.40 4.39 -57.35 -0.25 -9.66 16 13 C 0.70 12.15 8.56 -86.92 -0.74 11.40 16 14 O -0.60 -12.77 15.99 5.29 0.08 -12.69 16 15 N -0.74 -13.10 5.56 -65.23 -0.36 -13.47 16 16 C 0.14 3.04 5.61 -4.04 -0.02 3.02 16 17 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 18 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 22 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.05 0.40 6.26 -51.93 -0.33 0.08 16 29 H 0.05 0.39 7.91 -51.93 -0.41 -0.02 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.85 7.86 -51.93 -0.41 0.44 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.70 7.37 -51.93 -0.38 0.32 16 38 H 0.39 4.04 6.47 -40.82 -0.26 3.78 16 39 H 0.39 5.99 8.49 -40.82 -0.35 5.64 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -31.67 356.40 -10.67 -42.34 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -7.57 Total: 5.11 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -2.46 Total: -1.93 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -1.08 Total: -54.67 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.67 -10.67 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343826789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.855 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds