Wall clock time and date at job start Tue Mar 31 2020 05:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48507 * 109.47345 * 240.00037 * 3 2 1 5 5 H 1.48502 * 109.47317 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47320 * 120.00482 * 3 2 1 7 7 C 1.37876 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00515 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00065 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 H 1.09002 * 110.81002 * 36.89795 * 15 14 12 17 17 C 1.55332 * 110.90703 * 273.26770 * 15 14 12 18 18 C 1.54805 * 104.99107 * 219.60568 * 17 15 14 19 19 N 1.46341 * 105.96022 * 356.35680 * 18 17 15 20 20 C 1.45538 * 117.21246 * 151.92888 * 19 18 17 21 21 C 1.53631 * 107.85799 * 174.45076 * 20 19 18 22 22 C 1.52827 * 110.64486 * 57.13246 * 21 20 19 23 23 C 1.53634 * 110.61440 * 306.13046 * 22 21 20 24 24 C 1.48658 * 105.49853 * 29.50673 * 19 18 17 25 25 H 1.08996 * 111.11279 * 74.57793 * 24 19 18 26 26 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47827 * 59.99660 * 9 7 2 28 28 H 1.09007 * 109.47098 * 299.99383 * 9 7 2 29 29 H 1.09000 * 109.47211 * 59.99027 * 10 9 7 30 30 H 1.09006 * 109.46815 * 299.99263 * 10 9 7 31 31 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 32 32 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 33 33 H 1.08996 * 110.33647 * 338.48233 * 17 15 14 34 34 H 1.09000 * 110.33742 * 100.73034 * 17 15 14 35 35 H 1.08995 * 110.15354 * 115.47955 * 18 17 15 36 36 H 1.08993 * 110.15053 * 237.16574 * 18 17 15 37 37 H 1.08999 * 109.78022 * 294.04373 * 20 19 18 38 38 H 1.08999 * 109.78063 * 54.86021 * 20 19 18 39 39 H 1.08999 * 109.24520 * 296.83356 * 21 20 19 40 40 H 1.08996 * 109.21200 * 177.40765 * 21 20 19 41 41 H 1.08998 * 109.25049 * 185.83891 * 22 21 20 42 42 H 1.09004 * 109.21978 * 66.40186 * 22 21 20 43 43 H 1.09003 * 109.83151 * 296.88966 * 23 22 21 44 44 H 1.09000 * 109.83576 * 175.93122 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 6 2.1865 -6.0980 -0.0024 13 8 3.4024 -6.0981 -0.0019 14 7 1.5126 -7.2652 -0.0034 15 6 2.2450 -8.5339 0.0024 16 1 3.1415 -8.4608 0.6182 17 6 2.6006 -8.9753 -1.4439 18 6 2.3842 -10.5080 -1.4594 19 7 2.0277 -10.8780 -0.0892 20 6 1.1902 -12.0553 0.0859 21 6 1.0667 -12.3258 1.5931 22 6 0.4977 -11.1047 2.3148 23 6 1.3262 -9.8515 1.9933 24 6 1.3431 -9.6868 0.4786 25 1 0.3348 -9.5851 0.0775 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8881 29 1 2.8713 -3.6047 0.8890 30 1 2.8725 -3.6040 -0.8911 31 1 0.5426 -4.9308 -0.0020 32 1 0.5426 -7.2652 -0.0034 33 1 1.9375 -8.4918 -2.1613 34 1 3.6405 -8.7373 -1.6678 35 1 1.5736 -10.7660 -2.1410 36 1 3.3019 -11.0138 -1.7594 37 1 0.2029 -11.8721 -0.3382 38 1 1.6506 -12.9120 -0.4062 39 1 2.0519 -12.5559 1.9988 40 1 0.4051 -13.1773 1.7517 41 1 0.5165 -11.2817 3.3902 42 1 -0.5323 -10.9464 1.9948 43 1 2.3439 -9.9762 2.3631 44 1 0.8684 -8.9769 2.4553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343855035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:05 Heat of formation + Delta-G solvation = -42.100707 kcal Electronic energy + Delta-G solvation = -22126.433688 eV Core-core repulsion = 18884.659517 eV Total energy + Delta-G solvation = -3241.774171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.53757 -39.14610 -35.70188 -34.70195 -33.90986 -32.81027 -31.47032 -29.57226 -29.24858 -26.76548 -24.55853 -23.38568 -21.86398 -21.55657 -20.75102 -20.57232 -19.81882 -17.97304 -16.64801 -16.27240 -15.92258 -15.21754 -14.97489 -14.94797 -14.55437 -14.48762 -13.96820 -13.68010 -13.53469 -13.39643 -13.20889 -12.95769 -12.59173 -12.25752 -12.02632 -11.60112 -11.46821 -11.17634 -11.10272 -10.99779 -10.87769 -10.66018 -10.62932 -10.56010 -10.28691 -9.90912 -9.53469 -9.25800 -8.97464 -8.61504 -8.46590 -8.22559 -6.07764 -4.10331 2.97064 3.32676 3.36248 3.40039 3.60582 3.73544 4.22348 4.39667 4.41793 4.60486 4.69860 4.82276 4.85842 4.89329 4.99580 5.00901 5.17619 5.25384 5.29314 5.37263 5.41428 5.57830 5.62851 5.70358 5.73584 5.82050 5.87385 6.00685 6.04082 6.13625 6.32960 6.42415 6.53662 6.76415 6.80673 6.95694 7.03225 7.27130 7.58705 7.65260 7.91549 8.27871 8.46615 8.94595 9.03652 9.54306 11.03924 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039474 B = 0.002723 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.155695 B =10281.225767 C =10614.291868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.700 3.300 13 O -0.595 6.595 14 N -0.746 5.746 15 C 0.173 3.827 16 H 0.102 0.898 17 C -0.142 4.142 18 C 0.052 3.948 19 N -0.534 5.534 20 C 0.062 3.938 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.105 4.105 24 C 0.063 3.937 25 H 0.058 0.942 26 H 0.262 0.738 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.392 0.608 32 H 0.393 0.607 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.721 -25.260 0.782 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.392 5.392 12 C 0.400 3.600 13 O -0.474 6.474 14 N -0.402 5.402 15 C 0.066 3.934 16 H 0.120 0.880 17 C -0.181 4.181 18 C -0.076 4.076 19 N -0.259 5.259 20 C -0.066 4.066 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.143 4.143 24 C -0.046 4.046 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.225 0.775 32 H 0.226 0.774 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.280 -25.250 1.021 25.273 hybrid contribution -1.330 1.022 -0.587 1.777 sum -1.609 -24.228 0.433 24.286 Atomic orbital electron populations 1.69947 1.06095 1.26948 1.50435 1.24994 0.94894 0.99398 0.95015 0.86568 0.79508 0.82629 0.78800 1.20103 1.21275 1.20095 1.21024 0.93249 0.90388 1.51304 0.92260 1.19318 0.94249 0.91084 0.97757 1.21583 0.95614 0.80414 1.00629 1.45538 1.09806 1.05344 1.78553 1.16048 0.85670 0.80424 0.77901 1.90892 1.11710 1.86588 1.58204 1.45093 1.09154 1.04454 1.81485 1.21402 0.95234 0.80761 0.96005 0.87991 1.23110 1.03333 0.93949 0.97724 1.22514 1.00508 0.95812 0.88740 1.62661 1.42796 1.02909 1.17566 1.21953 0.94756 0.92960 0.96979 1.21600 1.01756 0.97605 0.94311 1.21579 0.99039 0.94853 1.00313 1.21524 1.01478 0.97619 0.93703 1.22745 0.95842 0.90014 0.95992 0.92434 0.92821 0.96024 0.95998 0.92788 0.92822 0.77463 0.77402 0.90999 0.90192 0.94342 0.90228 0.94970 0.90717 0.91095 0.91746 0.91705 0.92470 0.90499 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.05 5.61 -4.04 -0.02 3.02 16 11 N -0.74 -13.13 5.56 -65.22 -0.36 -13.49 16 12 C 0.70 12.27 8.57 -86.92 -0.74 11.53 16 13 O -0.60 -12.86 16.08 5.28 0.08 -12.78 16 14 N -0.75 -9.50 5.18 -56.99 -0.29 -9.80 16 15 C 0.17 2.05 2.87 -66.21 -0.19 1.86 16 16 H 0.10 1.46 7.67 -51.93 -0.40 1.06 16 17 C -0.14 -1.57 6.73 -24.54 -0.17 -1.74 16 18 C 0.05 0.48 6.86 -3.18 -0.02 0.46 16 19 N -0.53 -4.96 4.65 -225.06 -1.05 -6.01 16 20 C 0.06 0.47 5.85 -4.23 -0.02 0.45 16 21 C -0.11 -0.80 6.06 -26.49 -0.16 -0.96 16 22 C -0.12 -0.88 5.94 -26.49 -0.16 -1.04 16 23 C -0.11 -0.94 5.68 -26.72 -0.15 -1.09 16 24 C 0.06 0.59 2.21 -66.58 -0.15 0.45 16 25 H 0.06 0.52 7.98 -51.93 -0.41 0.11 16 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.39 5.97 8.49 -40.82 -0.35 5.63 16 32 H 0.39 3.95 8.57 -40.82 -0.35 3.60 16 33 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.32 8.04 -51.93 -0.42 -0.09 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.03 0.24 8.04 -51.93 -0.42 -0.17 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 350.40 15.07 5.28 5.28 Total: -1.00 -31.80 350.40 -10.76 -42.56 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.80 Total: 3.46 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -2.34 Total: -0.18 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.97 Total: -54.82 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.08 Total: -12.78 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.80 -10.76 -42.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343855035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.461 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds