Wall clock time and date at job start Tue Mar 31 2020 05:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.34769 * 120.00241 * 180.02562 * 11 10 9 13 13 O 1.21587 * 120.00166 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00187 * 180.02562 * 12 11 10 15 15 C 1.46507 * 119.99847 * 179.97438 * 14 12 11 16 16 H 1.08989 * 110.44019 * 323.90471 * 15 14 12 17 17 C 1.54991 * 110.48660 * 86.45385 * 15 14 12 18 18 C 1.55189 * 104.93561 * 121.16876 * 17 15 14 19 19 N 1.47098 * 103.52693 * 23.98932 * 18 17 15 20 20 C 1.45674 * 116.52694 * 197.61679 * 19 18 17 21 21 C 1.53625 * 107.80530 * 182.64292 * 20 19 18 22 22 C 1.52814 * 110.71087 * 302.63143 * 21 20 19 23 23 C 1.53660 * 110.60903 * 53.74072 * 22 21 20 24 24 C 1.48730 * 103.69878 * 317.77480 * 19 18 17 25 25 H 1.09004 * 110.33468 * 286.15196 * 24 19 18 26 26 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 28 28 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 29 29 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 30 30 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 31 31 H 0.97010 * 119.99910 * 359.97438 * 11 10 9 32 32 H 0.96996 * 120.00041 * 359.97438 * 14 12 11 33 33 H 1.08997 * 110.34610 * 240.03255 * 17 15 14 34 34 H 1.08997 * 110.35114 * 2.30450 * 17 15 14 35 35 H 1.09000 * 110.61325 * 142.50349 * 18 17 15 36 36 H 1.08999 * 110.61187 * 265.48080 * 18 17 15 37 37 H 1.08998 * 109.78987 * 302.22069 * 20 19 18 38 38 H 1.09000 * 109.79335 * 63.06642 * 20 19 18 39 39 H 1.09001 * 109.22471 * 62.94444 * 21 20 19 40 40 H 1.08994 * 109.22856 * 182.35204 * 21 20 19 41 41 H 1.09007 * 109.24521 * 174.03293 * 22 21 20 42 42 H 1.09003 * 109.25151 * 293.44637 * 22 21 20 43 43 H 1.09002 * 109.83954 * 63.38971 * 23 22 21 44 44 H 1.08997 * 109.84046 * 184.29434 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 2.1868 -6.0979 -0.0007 13 8 3.4027 -6.0980 -0.0003 14 7 1.5130 -7.2652 -0.0018 15 6 2.2456 -8.5339 -0.0019 16 1 3.1510 -8.4506 -0.6029 17 6 2.5936 -8.9595 1.4472 18 6 1.9235 -10.3475 1.6282 19 7 1.8049 -10.8544 0.2524 20 6 0.8691 -11.9507 0.0414 21 6 0.9534 -12.3624 -1.4363 22 6 0.6506 -11.1731 -2.3468 23 6 1.5558 -9.9812 -1.9988 24 6 1.3552 -9.6673 -0.5227 25 1 0.3075 -9.4521 -0.3121 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 0.6248 -2.5571 0.8897 29 1 2.8721 -3.6043 -0.8905 30 1 2.8721 -3.6042 0.8895 31 1 0.5429 -4.9308 -0.0011 32 1 0.5430 -7.2652 -0.0025 33 1 3.6736 -9.0412 1.5692 34 1 2.1837 -8.2449 2.1609 35 1 2.5561 -11.0040 2.2258 36 1 0.9393 -10.2419 2.0844 37 1 1.1403 -12.7946 0.6758 38 1 -0.1434 -11.6221 0.2758 39 1 1.9567 -12.7313 -1.6494 40 1 0.2309 -13.1551 -1.6298 41 1 0.8200 -11.4624 -3.3840 42 1 -0.3921 -10.8810 -2.2216 43 1 2.5980 -10.2420 -2.1833 44 1 1.2784 -9.1173 -2.6027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343855036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:07 Heat of formation + Delta-G solvation = -41.259862 kcal Electronic energy + Delta-G solvation = -22137.850539 eV Core-core repulsion = 18896.112830 eV Total energy + Delta-G solvation = -3241.737709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.58321 -39.14905 -35.73055 -34.69955 -33.85358 -32.81357 -31.48999 -29.57829 -29.23334 -26.75531 -24.55968 -23.38133 -21.97334 -21.55393 -20.75531 -20.45130 -19.88853 -17.95682 -16.66353 -16.28352 -15.83109 -15.35904 -14.97066 -14.88796 -14.59051 -14.48247 -13.99707 -13.65861 -13.55232 -13.45065 -13.22444 -12.80598 -12.60431 -12.26451 -11.95928 -11.58814 -11.43952 -11.17236 -11.12101 -11.01541 -10.89940 -10.69594 -10.61799 -10.57177 -10.29783 -9.90137 -9.53870 -9.24717 -8.97710 -8.72781 -8.47176 -8.22825 -6.08179 -4.10655 2.98725 3.30620 3.36684 3.41366 3.60822 3.74576 4.21882 4.38318 4.41127 4.60020 4.69104 4.82553 4.84492 4.90033 4.99231 5.03305 5.16933 5.25961 5.29005 5.36334 5.41116 5.57216 5.61691 5.69274 5.74455 5.80496 5.86035 6.00187 6.04556 6.11924 6.32383 6.42185 6.46287 6.76909 6.80799 6.90075 7.02958 7.26575 7.58600 7.64947 7.91322 8.27571 8.46335 8.94538 9.03485 9.54071 11.03567 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039246 B = 0.002720 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.268519 B =10293.518374 C =10553.624597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.699 3.301 13 O -0.595 6.595 14 N -0.747 5.747 15 C 0.171 3.829 16 H 0.099 0.901 17 C -0.133 4.133 18 C 0.042 3.958 19 N -0.521 5.521 20 C 0.055 3.945 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.105 4.105 24 C 0.059 3.941 25 H 0.055 0.945 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.392 0.608 32 H 0.392 0.608 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 -25.196 -0.729 25.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.393 5.393 12 C 0.399 3.601 13 O -0.474 6.474 14 N -0.404 5.404 15 C 0.064 3.936 16 H 0.118 0.882 17 C -0.173 4.173 18 C -0.085 4.085 19 N -0.246 5.246 20 C -0.073 4.073 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.143 4.143 24 C -0.050 4.050 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.225 0.775 32 H 0.225 0.775 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.387 -25.269 -0.877 25.288 hybrid contribution -1.440 1.168 0.384 1.893 sum -1.827 -24.101 -0.494 24.175 Atomic orbital electron populations 1.69958 1.06095 1.26838 1.50538 1.24998 0.94895 0.99414 0.95030 0.86508 0.79845 0.82981 0.78198 1.20557 1.21200 1.19709 1.21061 0.93286 0.90372 1.51152 0.92207 1.19322 0.94257 0.91109 0.97762 1.21583 0.95612 0.80412 1.00631 1.45544 1.09802 1.05357 1.78556 1.16049 0.85680 0.80433 0.77919 1.90891 1.11703 1.86597 1.58203 1.45232 1.09118 1.04504 1.81522 1.21191 0.95318 0.80898 0.96206 0.88250 1.23035 1.01877 0.95238 0.97131 1.22879 0.99446 0.96284 0.89931 1.63871 1.46989 1.05601 1.08138 1.22037 0.93645 0.94313 0.97340 1.21589 1.02390 0.97635 0.93653 1.21589 0.99401 0.95337 0.99469 1.21504 1.01093 0.97937 0.93780 1.22621 0.97208 0.90181 0.94972 0.92693 0.92881 0.95997 0.96020 0.92795 0.92810 0.77474 0.77481 0.90232 0.90685 0.90037 0.94192 0.90635 0.94865 0.91089 0.91733 0.91665 0.92439 0.90487 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.05 5.61 -4.04 -0.02 3.03 16 11 N -0.74 -13.14 5.56 -65.22 -0.36 -13.51 16 12 C 0.70 12.27 8.56 -86.93 -0.74 11.52 16 13 O -0.60 -12.85 16.05 5.29 0.08 -12.77 16 14 N -0.75 -9.55 5.07 -57.52 -0.29 -9.85 16 15 C 0.17 2.02 2.98 -66.74 -0.20 1.83 16 16 H 0.10 1.41 7.52 -51.94 -0.39 1.02 16 17 C -0.13 -1.48 6.84 -24.52 -0.17 -1.65 16 18 C 0.04 0.39 6.71 -2.56 -0.02 0.37 16 19 N -0.52 -4.81 4.84 -224.49 -1.09 -5.89 16 20 C 0.05 0.42 5.87 -4.16 -0.02 0.39 16 21 C -0.11 -0.79 6.06 -26.50 -0.16 -0.96 16 22 C -0.12 -0.88 5.95 -26.48 -0.16 -1.04 16 23 C -0.11 -0.94 5.65 -26.77 -0.15 -1.09 16 24 C 0.06 0.56 2.17 -66.95 -0.15 0.41 16 25 H 0.06 0.50 7.63 -51.93 -0.40 0.11 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.39 5.99 8.49 -40.82 -0.35 5.64 16 32 H 0.39 3.98 8.38 -40.82 -0.34 3.64 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.89 7.96 -51.93 -0.41 0.48 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.03 0.25 7.99 -51.93 -0.41 -0.16 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 349.73 15.07 5.27 5.27 Total: -1.00 -31.81 349.73 -10.78 -42.58 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.76 Total: 3.51 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -2.34 Total: -0.30 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -1.01 Total: -54.77 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.81 -10.78 -42.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343855036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.323 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds