Wall clock time and date at job start Tue Mar 31 2020 05:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.34769 * 120.00241 * 180.02562 * 11 10 9 13 13 O 1.21587 * 120.00166 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00187 * 180.02562 * 12 11 10 15 15 C 1.46507 * 119.99847 * 179.97438 * 14 12 11 16 16 H 1.08989 * 110.44019 * 323.90471 * 15 14 12 17 17 C 1.54991 * 110.48660 * 86.45385 * 15 14 12 18 18 C 1.55189 * 104.93561 * 121.16876 * 17 15 14 19 19 N 1.47098 * 103.52693 * 23.98932 * 18 17 15 20 20 C 1.45674 * 116.52694 * 197.61679 * 19 18 17 21 21 C 1.53625 * 107.80530 * 182.64292 * 20 19 18 22 22 C 1.52814 * 110.71087 * 302.63143 * 21 20 19 23 23 C 1.53660 * 110.60903 * 53.74072 * 22 21 20 24 24 C 1.48730 * 103.69878 * 317.77480 * 19 18 17 25 25 H 1.09004 * 110.33468 * 286.15196 * 24 19 18 26 26 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 28 28 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 29 29 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 30 30 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 31 31 H 0.97010 * 119.99910 * 359.97438 * 11 10 9 32 32 H 0.96996 * 120.00041 * 359.97438 * 14 12 11 33 33 H 1.08997 * 110.34610 * 240.03255 * 17 15 14 34 34 H 1.08997 * 110.35114 * 2.30450 * 17 15 14 35 35 H 1.09000 * 110.61325 * 142.50349 * 18 17 15 36 36 H 1.08999 * 110.61187 * 265.48080 * 18 17 15 37 37 H 1.08998 * 109.78987 * 302.22069 * 20 19 18 38 38 H 1.09000 * 109.79335 * 63.06642 * 20 19 18 39 39 H 1.09001 * 109.22471 * 62.94444 * 21 20 19 40 40 H 1.08994 * 109.22856 * 182.35204 * 21 20 19 41 41 H 1.09007 * 109.24521 * 174.03293 * 22 21 20 42 42 H 1.09003 * 109.25151 * 293.44637 * 22 21 20 43 43 H 1.09002 * 109.83954 * 63.38971 * 23 22 21 44 44 H 1.08997 * 109.84046 * 184.29434 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 2.1868 -6.0979 -0.0007 13 8 3.4027 -6.0980 -0.0003 14 7 1.5130 -7.2652 -0.0018 15 6 2.2456 -8.5339 -0.0019 16 1 3.1510 -8.4506 -0.6029 17 6 2.5936 -8.9595 1.4472 18 6 1.9235 -10.3475 1.6282 19 7 1.8049 -10.8544 0.2524 20 6 0.8691 -11.9507 0.0414 21 6 0.9534 -12.3624 -1.4363 22 6 0.6506 -11.1731 -2.3468 23 6 1.5558 -9.9812 -1.9988 24 6 1.3552 -9.6673 -0.5227 25 1 0.3075 -9.4521 -0.3121 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 0.6248 -2.5571 0.8897 29 1 2.8721 -3.6043 -0.8905 30 1 2.8721 -3.6042 0.8895 31 1 0.5429 -4.9308 -0.0011 32 1 0.5430 -7.2652 -0.0025 33 1 3.6736 -9.0412 1.5692 34 1 2.1837 -8.2449 2.1609 35 1 2.5561 -11.0040 2.2258 36 1 0.9393 -10.2419 2.0844 37 1 1.1403 -12.7946 0.6758 38 1 -0.1434 -11.6221 0.2758 39 1 1.9567 -12.7313 -1.6494 40 1 0.2309 -13.1551 -1.6298 41 1 0.8200 -11.4624 -3.3840 42 1 -0.3921 -10.8810 -2.2216 43 1 2.5980 -10.2420 -2.1833 44 1 1.2784 -9.1173 -2.6027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343855036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:06 Heat of formation + Delta-G solvation = -63.754511 kcal Electronic energy + Delta-G solvation = -22138.825980 eV Core-core repulsion = 18896.112830 eV Total energy + Delta-G solvation = -3242.713151 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.55747 -40.38820 -36.87958 -36.19866 -34.94329 -34.67021 -32.50532 -31.16810 -30.13887 -27.77426 -26.40628 -24.06497 -23.13760 -22.72676 -22.25087 -21.46138 -20.75930 -19.33215 -18.41730 -17.65448 -16.81846 -16.49583 -16.39366 -16.12902 -15.97179 -15.42798 -15.05576 -14.99048 -14.71765 -14.41998 -14.35858 -14.21978 -13.55321 -13.37078 -13.20061 -13.01011 -12.82922 -12.51788 -12.36155 -12.22705 -12.19289 -11.85979 -11.66485 -11.54594 -11.48953 -11.44805 -11.21113 -11.18099 -10.60028 -10.31236 -9.72434 -9.41523 -8.23765 -6.33864 1.42289 1.42851 1.54169 1.71875 2.16932 2.41625 2.96817 3.11149 3.39781 3.45921 3.64112 3.98449 4.02552 4.11684 4.15664 4.24505 4.32684 4.48052 4.51080 4.53171 4.54317 4.65393 4.80098 4.87057 4.88326 4.90112 4.94972 5.03709 5.09013 5.12903 5.24290 5.30857 5.32684 5.48399 5.48774 5.52622 5.60298 5.79503 5.91969 6.03365 6.17848 6.24607 6.79419 7.13217 7.35491 7.61242 8.88243 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039246 B = 0.002720 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.268519 B =10293.518374 C =10553.624597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.161 3.839 11 N -0.733 5.733 12 C 0.700 3.300 13 O -0.637 6.637 14 N -0.725 5.725 15 C 0.167 3.833 16 H 0.073 0.927 17 C -0.133 4.133 18 C 0.051 3.949 19 N -0.531 5.531 20 C 0.053 3.947 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.106 4.106 24 C 0.068 3.932 25 H 0.066 0.934 26 H 0.266 0.734 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.406 0.594 32 H 0.408 0.592 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.614 -26.281 -0.685 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.037 3.963 11 N -0.388 5.388 12 C 0.400 3.600 13 O -0.519 6.519 14 N -0.382 5.382 15 C 0.060 3.940 16 H 0.091 0.909 17 C -0.172 4.172 18 C -0.077 4.077 19 N -0.256 5.256 20 C -0.074 4.074 21 C -0.150 4.150 22 C -0.155 4.155 23 C -0.144 4.144 24 C -0.041 4.041 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.242 0.758 32 H 0.245 0.755 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.182 -26.407 -0.834 26.447 hybrid contribution -1.214 1.443 0.366 1.921 sum -2.396 -24.964 -0.468 25.083 Atomic orbital electron populations 1.70057 1.07520 1.27992 1.51093 1.25865 0.95802 1.03072 0.94426 0.85446 0.78625 0.78454 0.78539 1.19738 1.20487 1.19098 1.21472 0.93610 0.91936 1.51445 0.92325 1.19121 0.94209 0.91622 0.96341 1.21062 0.94602 0.81119 0.99544 1.45217 1.10351 1.04412 1.78799 1.16127 0.85158 0.81179 0.77556 1.90865 1.13717 1.87253 1.60034 1.45017 1.09914 1.03400 1.79840 1.21270 0.94999 0.80994 0.96698 0.90868 1.22974 1.01426 0.96630 0.96184 1.22824 0.99862 0.94873 0.90161 1.63881 1.47931 1.05758 1.08024 1.22129 0.93457 0.93872 0.97972 1.21588 1.02556 0.97818 0.93078 1.21574 0.99179 0.94698 1.00025 1.21499 1.00898 0.98667 0.93334 1.22520 0.96961 0.89312 0.95327 0.91603 0.92541 0.97282 0.97309 0.93891 0.93917 0.75819 0.75510 0.91374 0.91461 0.89046 0.93153 0.89651 0.94306 0.91767 0.89982 0.90997 0.91803 0.91676 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.46 13.29 21.45 0.28 -54.18 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -30.76 9.11 25.60 0.23 -30.53 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.25 5.09 29.85 0.15 1.40 16 10 C 0.16 7.10 5.61 86.38 0.48 7.59 16 11 N -0.73 -26.03 5.56 -478.53 -2.66 -28.69 16 12 C 0.70 24.59 8.56 179.06 1.53 26.12 16 13 O -0.64 -28.05 16.05 -3.99 -0.06 -28.12 16 14 N -0.73 -18.07 5.07 -454.16 -2.30 -20.37 16 15 C 0.17 3.91 2.98 45.76 0.14 4.04 16 16 H 0.07 2.14 7.52 -2.39 -0.02 2.12 16 17 C -0.13 -2.90 6.84 32.03 0.22 -2.68 16 18 C 0.05 0.83 6.71 87.02 0.58 1.41 16 19 N -0.53 -8.85 4.84 -864.14 -4.18 -13.03 16 20 C 0.05 0.67 5.87 86.74 0.51 1.18 16 21 C -0.11 -1.29 6.06 30.74 0.19 -1.10 16 22 C -0.12 -1.48 5.95 30.75 0.18 -1.29 16 23 C -0.11 -1.78 5.65 30.57 0.17 -1.61 16 24 C 0.07 1.19 2.17 44.40 0.10 1.29 16 25 H 0.07 1.04 7.63 -2.38 -0.02 1.02 16 26 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.41 12.14 8.49 -92.70 -0.79 11.36 16 32 H 0.41 7.63 8.38 -92.71 -0.78 6.85 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.57 7.96 -2.39 -0.02 1.55 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.04 0.46 7.99 -2.39 -0.02 0.45 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 40 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -68.09 349.73 -2.53 -70.63 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -0.58 Total: 21.23 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 4.95 Total: 6.68 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -8.86 Total: -116.27 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.06 Total: -28.12 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -68.09 -2.53 -70.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343855036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.872 kcal (2) G-P(sol) polarization free energy of solvation -68.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds