Wall clock time and date at job start Tue Mar 31 2020 05:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99948 * 2 1 4 4 H 1.48499 * 109.46824 * 270.00019 * 3 2 1 5 5 H 1.48504 * 109.47091 * 29.99539 * 3 2 1 6 6 H 1.48492 * 109.47084 * 149.99599 * 3 2 1 7 7 C 1.37875 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99703 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99965 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47110 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47442 * 180.02562 * 10 9 7 12 12 C 1.34776 * 120.00572 * 179.97438 * 11 10 9 13 13 O 1.21590 * 119.99673 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00626 * 180.02562 * 12 11 10 15 15 C 1.46490 * 120.00215 * 180.02562 * 14 12 11 16 16 H 1.09003 * 110.44065 * 323.90574 * 15 14 12 17 17 C 1.54993 * 110.49146 * 86.45188 * 15 14 12 18 18 C 1.55196 * 104.93327 * 116.31712 * 17 15 14 19 19 N 1.47095 * 103.66201 * 335.92649 * 18 17 15 20 20 C 1.45665 * 116.54061 * 162.50973 * 19 18 17 21 21 C 1.53623 * 107.80264 * 177.31155 * 20 19 18 22 22 C 1.52818 * 110.69925 * 57.37496 * 21 20 19 23 23 C 1.54557 * 110.76755 * 306.36623 * 22 21 20 24 24 C 1.49109 * 103.51649 * 42.20845 * 19 18 17 25 25 H 1.08991 * 110.32250 * 73.91003 * 24 19 18 26 26 H 0.97003 * 119.99931 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46774 * 60.00665 * 9 7 2 28 28 H 1.08998 * 109.47446 * 300.00907 * 9 7 2 29 29 H 1.09004 * 109.47107 * 60.00443 * 10 9 7 30 30 H 1.08998 * 109.47359 * 300.00534 * 10 9 7 31 31 H 0.97006 * 120.00218 * 0.02562 * 11 10 9 32 32 H 0.97003 * 119.99403 * 359.97438 * 14 12 11 33 33 H 1.09002 * 110.34351 * 357.45667 * 17 15 14 34 34 H 1.08994 * 110.35120 * 235.18382 * 17 15 14 35 35 H 1.09002 * 110.61182 * 94.51427 * 18 17 15 36 36 H 1.08997 * 110.61085 * 217.33768 * 18 17 15 37 37 H 1.09001 * 109.79246 * 296.88809 * 20 19 18 38 38 H 1.09008 * 109.79428 * 57.73564 * 20 19 18 39 39 H 1.09006 * 109.23116 * 177.68843 * 21 20 19 40 40 H 1.08997 * 109.22973 * 297.06292 * 21 20 19 41 41 H 1.09008 * 109.24701 * 66.53844 * 22 21 20 42 42 H 1.08990 * 109.25182 * 185.99605 * 22 21 20 43 43 H 1.09001 * 109.62375 * 296.59556 * 23 22 21 44 44 H 1.08995 * 110.15949 * 175.56607 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0001 11 7 5.4865 -2.6365 0.0001 12 6 6.1604 -3.8036 0.0008 13 8 5.5525 -4.8566 0.0008 14 7 7.5082 -3.8037 0.0013 15 6 8.2406 -5.0723 0.0014 16 1 7.7160 -5.8148 0.6028 17 6 8.4347 -5.5869 -1.4476 18 6 9.9704 -5.5811 -1.6718 19 7 10.4584 -4.5827 -0.7080 20 6 11.8803 -4.6218 -0.3941 21 6 12.1808 -3.4628 0.5684 22 6 11.3178 -3.5669 1.8253 23 6 9.8213 -3.6771 1.4550 24 6 9.6678 -4.8711 0.5229 25 1 10.0282 -5.7826 0.9994 26 1 -0.4850 0.8401 -0.0004 27 1 3.8752 -0.6796 0.8896 28 1 3.8746 -0.6806 -0.8904 29 1 3.6579 -3.1505 -0.8897 30 1 3.6585 -3.1501 0.8902 31 1 5.9716 -1.7964 0.0005 32 1 7.9932 -2.9636 0.0009 33 1 7.9458 -4.9181 -2.1560 34 1 8.0411 -6.5985 -1.5465 35 1 10.3935 -6.5621 -1.4555 36 1 10.2082 -5.2783 -2.6915 37 1 12.1271 -5.5707 0.0822 38 1 12.4634 -4.5037 -1.3075 39 1 13.2329 -3.4949 0.8516 40 1 11.9731 -2.5172 0.0676 41 1 11.6111 -4.4518 2.3903 42 1 11.4710 -2.6806 2.4408 43 1 9.5021 -2.7674 0.9465 44 1 9.2224 -3.8294 2.3529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343855037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:09 Heat of formation + Delta-G solvation = -33.898582 kcal Electronic energy + Delta-G solvation = -22418.898949 eV Core-core repulsion = 19177.480448 eV Total energy + Delta-G solvation = -3241.418500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.67289 -39.11011 -35.68177 -34.76661 -33.98911 -32.74373 -31.36020 -29.85781 -29.42933 -26.96551 -24.64289 -23.42802 -21.97738 -21.34644 -20.78240 -20.66946 -19.50450 -18.10786 -16.85999 -16.35305 -16.07799 -15.41308 -15.09753 -14.82914 -14.68643 -14.20357 -13.92855 -13.86921 -13.60624 -13.56470 -13.25713 -12.82932 -12.57718 -12.42668 -12.20025 -11.55291 -11.43951 -11.39741 -11.24299 -11.13252 -10.91167 -10.71416 -10.63695 -10.34441 -10.20520 -9.93945 -9.69437 -9.28656 -9.02378 -8.71384 -8.59365 -8.30753 -6.07994 -4.07730 3.05544 3.27789 3.35269 3.36775 3.58306 3.62972 4.18109 4.33587 4.40638 4.55886 4.65334 4.70409 4.84863 4.86772 4.97058 4.99889 5.15993 5.19847 5.25100 5.36430 5.40884 5.51191 5.53445 5.62790 5.68240 5.76405 5.78814 5.86852 6.02069 6.07207 6.14367 6.30047 6.52146 6.63126 6.74268 6.88630 6.89247 7.13198 7.29498 7.38561 7.71330 8.38271 8.50485 8.96452 9.00736 9.52353 11.05140 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026617 B = 0.003250 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.699359 B = 8612.417959 C = 9195.544363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.149 3.851 11 N -0.743 5.743 12 C 0.699 3.301 13 O -0.597 6.597 14 N -0.739 5.739 15 C 0.172 3.828 16 H 0.094 0.906 17 C -0.133 4.133 18 C 0.043 3.957 19 N -0.524 5.524 20 C 0.055 3.945 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.104 4.104 24 C 0.054 3.946 25 H 0.063 0.937 26 H 0.264 0.736 27 H 0.021 0.979 28 H 0.017 0.983 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.391 0.609 32 H 0.396 0.604 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.618 -8.027 0.625 28.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.026 3.974 11 N -0.396 5.396 12 C 0.399 3.601 13 O -0.475 6.475 14 N -0.396 5.396 15 C 0.065 3.935 16 H 0.112 0.888 17 C -0.173 4.173 18 C -0.085 4.085 19 N -0.249 5.249 20 C -0.073 4.073 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.142 4.142 24 C -0.054 4.054 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.224 0.776 32 H 0.232 0.768 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 26.798 -8.376 0.410 28.079 hybrid contribution 1.047 0.882 0.170 1.379 sum 27.845 -7.494 0.580 28.842 Atomic orbital electron populations 1.69909 1.06292 1.27003 1.50599 1.25002 0.94760 0.99139 0.94426 0.86744 0.80256 0.83542 0.78478 1.20253 1.21321 1.19086 1.20931 0.88697 0.94892 1.51441 0.90598 1.19793 0.97871 0.91521 0.96764 1.21346 0.74885 0.99727 1.01403 1.45513 1.08850 1.06284 1.79002 1.16059 0.81382 0.84776 0.77908 1.90894 1.67831 1.30554 1.58263 1.45178 1.04609 1.08846 1.80967 1.21176 0.90134 0.86149 0.96008 0.88815 1.23068 0.94528 1.02175 0.97530 1.22858 0.95298 0.93314 0.97065 1.64011 1.04780 1.48180 1.07895 1.22022 0.88778 0.97514 0.99025 1.21582 0.99033 0.99059 0.95585 1.21738 0.94865 1.01866 0.97329 1.21588 0.96127 0.97912 0.98543 1.22788 0.93043 0.98087 0.91507 0.91888 0.92590 0.96050 0.96487 0.92250 0.92230 0.77645 0.76809 0.90188 0.90655 0.94181 0.90136 0.94907 0.90722 0.91734 0.91102 0.92451 0.91633 0.90793 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.02 -0.50 4.16 -27.89 -0.12 -0.62 16 10 C 0.15 3.13 5.61 -4.05 -0.02 3.11 16 11 N -0.74 -12.63 5.56 -65.23 -0.36 -12.99 16 12 C 0.70 11.88 8.56 -86.92 -0.74 11.14 16 13 O -0.60 -12.58 16.05 5.29 0.08 -12.49 16 14 N -0.74 -9.21 4.59 -57.51 -0.26 -9.48 16 15 C 0.17 1.93 3.23 -66.74 -0.22 1.72 16 16 H 0.09 1.20 7.66 -51.93 -0.40 0.80 16 17 C -0.13 -1.41 6.84 -24.52 -0.17 -1.58 16 18 C 0.04 0.36 6.69 -2.55 -0.02 0.35 16 19 N -0.52 -4.52 4.85 -224.16 -1.09 -5.61 16 20 C 0.05 0.40 5.88 -4.17 -0.02 0.37 16 21 C -0.11 -0.75 6.06 -26.50 -0.16 -0.92 16 22 C -0.12 -0.82 5.97 -26.01 -0.16 -0.98 16 23 C -0.10 -0.84 5.11 -26.29 -0.13 -0.98 16 24 C 0.05 0.48 2.44 -66.73 -0.16 0.32 16 25 H 0.06 0.54 7.99 -51.93 -0.42 0.12 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 28 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.39 5.56 8.49 -40.82 -0.35 5.21 16 32 H 0.40 4.18 6.68 -40.82 -0.27 3.91 16 33 H 0.08 0.98 7.97 -51.93 -0.41 0.56 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.03 0.23 8.00 -51.93 -0.42 -0.18 16 38 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.62 6.42 -51.93 -0.33 0.29 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -32.49 342.76 -10.31 -42.80 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.60 Total: 4.17 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.35 Total: -1.28 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.94 Total: -54.90 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.49 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.49 -10.31 -42.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343855037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.900 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds