Wall clock time and date at job start Tue Mar 31 2020 05:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99948 * 2 1 4 4 H 1.48499 * 109.46824 * 270.00019 * 3 2 1 5 5 H 1.48504 * 109.47091 * 29.99539 * 3 2 1 6 6 H 1.48492 * 109.47084 * 149.99599 * 3 2 1 7 7 C 1.37875 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99703 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99965 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47110 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47442 * 180.02562 * 10 9 7 12 12 C 1.34776 * 120.00572 * 179.97438 * 11 10 9 13 13 O 1.21590 * 119.99673 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00626 * 180.02562 * 12 11 10 15 15 C 1.46490 * 120.00215 * 180.02562 * 14 12 11 16 16 H 1.09003 * 110.44065 * 323.90574 * 15 14 12 17 17 C 1.54993 * 110.49146 * 86.45188 * 15 14 12 18 18 C 1.55196 * 104.93327 * 116.31712 * 17 15 14 19 19 N 1.47095 * 103.66201 * 335.92649 * 18 17 15 20 20 C 1.45665 * 116.54061 * 162.50973 * 19 18 17 21 21 C 1.53623 * 107.80264 * 177.31155 * 20 19 18 22 22 C 1.52818 * 110.69925 * 57.37496 * 21 20 19 23 23 C 1.54557 * 110.76755 * 306.36623 * 22 21 20 24 24 C 1.49109 * 103.51649 * 42.20845 * 19 18 17 25 25 H 1.08991 * 110.32250 * 73.91003 * 24 19 18 26 26 H 0.97003 * 119.99931 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46774 * 60.00665 * 9 7 2 28 28 H 1.08998 * 109.47446 * 300.00907 * 9 7 2 29 29 H 1.09004 * 109.47107 * 60.00443 * 10 9 7 30 30 H 1.08998 * 109.47359 * 300.00534 * 10 9 7 31 31 H 0.97006 * 120.00218 * 0.02562 * 11 10 9 32 32 H 0.97003 * 119.99403 * 359.97438 * 14 12 11 33 33 H 1.09002 * 110.34351 * 357.45667 * 17 15 14 34 34 H 1.08994 * 110.35120 * 235.18382 * 17 15 14 35 35 H 1.09002 * 110.61182 * 94.51427 * 18 17 15 36 36 H 1.08997 * 110.61085 * 217.33768 * 18 17 15 37 37 H 1.09001 * 109.79246 * 296.88809 * 20 19 18 38 38 H 1.09008 * 109.79428 * 57.73564 * 20 19 18 39 39 H 1.09006 * 109.23116 * 177.68843 * 21 20 19 40 40 H 1.08997 * 109.22973 * 297.06292 * 21 20 19 41 41 H 1.09008 * 109.24701 * 66.53844 * 22 21 20 42 42 H 1.08990 * 109.25182 * 185.99605 * 22 21 20 43 43 H 1.09001 * 109.62375 * 296.59556 * 23 22 21 44 44 H 1.08995 * 110.15949 * 175.56607 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0001 11 7 5.4865 -2.6365 0.0001 12 6 6.1604 -3.8036 0.0008 13 8 5.5525 -4.8566 0.0008 14 7 7.5082 -3.8037 0.0013 15 6 8.2406 -5.0723 0.0014 16 1 7.7160 -5.8148 0.6028 17 6 8.4347 -5.5869 -1.4476 18 6 9.9704 -5.5811 -1.6718 19 7 10.4584 -4.5827 -0.7080 20 6 11.8803 -4.6218 -0.3941 21 6 12.1808 -3.4628 0.5684 22 6 11.3178 -3.5669 1.8253 23 6 9.8213 -3.6771 1.4550 24 6 9.6678 -4.8711 0.5229 25 1 10.0282 -5.7826 0.9994 26 1 -0.4850 0.8401 -0.0004 27 1 3.8752 -0.6796 0.8896 28 1 3.8746 -0.6806 -0.8904 29 1 3.6579 -3.1505 -0.8897 30 1 3.6585 -3.1501 0.8902 31 1 5.9716 -1.7964 0.0005 32 1 7.9932 -2.9636 0.0009 33 1 7.9458 -4.9181 -2.1560 34 1 8.0411 -6.5985 -1.5465 35 1 10.3935 -6.5621 -1.4555 36 1 10.2082 -5.2783 -2.6915 37 1 12.1271 -5.5707 0.0822 38 1 12.4634 -4.5037 -1.3075 39 1 13.2329 -3.4949 0.8516 40 1 11.9731 -2.5172 0.0676 41 1 11.6111 -4.4518 2.3903 42 1 11.4710 -2.6806 2.4408 43 1 9.5021 -2.7674 0.9465 44 1 9.2224 -3.8294 2.3529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343855037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:09 Heat of formation + Delta-G solvation = -57.801047 kcal Electronic energy + Delta-G solvation = -22419.935437 eV Core-core repulsion = 19177.480448 eV Total energy + Delta-G solvation = -3242.454989 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.59616 -40.29911 -36.83520 -36.10750 -34.98604 -34.67692 -32.50254 -31.37376 -30.17886 -27.89069 -26.43621 -24.04039 -22.84237 -22.64769 -22.26132 -21.64120 -20.33827 -19.46729 -18.88103 -17.43585 -16.91117 -16.52338 -16.27502 -16.10677 -15.87817 -15.46293 -15.16114 -15.10630 -14.69281 -14.57535 -14.32936 -14.23584 -13.47004 -13.32902 -13.27416 -13.08898 -12.93875 -12.22401 -12.17487 -12.14133 -12.07785 -11.96536 -11.74401 -11.51458 -11.49983 -11.36873 -11.25557 -11.17699 -10.77334 -10.31334 -9.72616 -9.35730 -8.28567 -6.35718 1.40493 1.43166 1.54543 1.78102 2.20648 2.38461 2.97567 3.06554 3.36110 3.48443 3.65056 3.98706 4.04000 4.15145 4.22531 4.26292 4.34581 4.37454 4.47648 4.49237 4.57501 4.68856 4.76316 4.78360 4.84293 4.89622 4.94866 5.04408 5.09962 5.14746 5.18692 5.26712 5.31942 5.43902 5.47354 5.48882 5.60212 5.69467 5.88887 6.09918 6.25152 6.26737 6.71739 7.18290 7.28804 7.65534 8.88365 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026617 B = 0.003250 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.699359 B = 8612.417959 C = 9195.544363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.236 1.236 7 C -0.539 4.539 8 H 0.028 0.972 9 C -0.011 4.011 10 C 0.166 3.834 11 N -0.733 5.733 12 C 0.698 3.302 13 O -0.641 6.641 14 N -0.716 5.716 15 C 0.165 3.835 16 H 0.075 0.925 17 C -0.133 4.133 18 C 0.050 3.950 19 N -0.530 5.530 20 C 0.053 3.947 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.104 4.104 24 C 0.063 3.937 25 H 0.070 0.930 26 H 0.268 0.732 27 H 0.037 0.963 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.409 0.591 32 H 0.409 0.591 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.037 0.963 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.289 -6.509 0.757 31.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.159 1.159 7 C -0.577 4.577 8 H 0.047 0.953 9 C -0.049 4.049 10 C 0.041 3.959 11 N -0.388 5.388 12 C 0.398 3.602 13 O -0.522 6.522 14 N -0.373 5.373 15 C 0.059 3.941 16 H 0.093 0.907 17 C -0.172 4.172 18 C -0.078 4.078 19 N -0.255 5.255 20 C -0.074 4.074 21 C -0.150 4.150 22 C -0.155 4.155 23 C -0.142 4.142 24 C -0.046 4.046 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.245 0.755 32 H 0.248 0.752 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 30.551 -6.850 0.541 31.315 hybrid contribution -0.133 0.289 0.122 0.340 sum 30.419 -6.562 0.664 31.126 Atomic orbital electron populations 1.70081 1.08602 1.28423 1.52072 1.26087 0.95690 1.03886 0.93675 0.85524 0.79666 0.77277 0.79311 1.19029 1.21240 1.15941 1.21261 0.91609 0.93387 1.51463 0.95315 1.19636 0.94322 0.92894 0.98027 1.20846 0.77233 0.98160 0.99633 1.45122 1.07221 1.07342 1.79119 1.16173 0.82555 0.83889 0.77582 1.90871 1.69095 1.32113 1.60170 1.44993 1.02895 1.10180 1.79280 1.21312 0.91240 0.85017 0.96528 0.90665 1.23007 0.96246 1.01522 0.96439 1.22799 0.93457 0.94052 0.97496 1.64021 1.05755 1.48228 1.07546 1.22101 0.87674 0.98028 0.99636 1.21572 0.99834 0.98426 0.95133 1.21720 0.93701 1.02415 0.97649 1.21594 0.97298 0.97269 0.98068 1.22698 0.91173 0.98852 0.91863 0.91226 0.92332 0.94447 0.94702 0.94240 0.94128 0.75542 0.75244 0.91925 0.90901 0.93049 0.89511 0.94449 0.89997 0.90260 0.91672 0.92039 0.90968 0.91017 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.96 42.61 27.47 68.60 1.88 44.50 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 7 C -0.54 -31.17 9.66 25.60 0.25 -30.92 16 8 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 9 C -0.01 -0.49 4.16 29.85 0.12 -0.37 16 10 C 0.17 7.00 5.61 86.38 0.48 7.49 16 11 N -0.73 -24.07 5.56 -478.55 -2.66 -26.73 16 12 C 0.70 23.46 8.56 179.06 1.53 25.00 16 13 O -0.64 -27.55 16.05 -4.00 -0.06 -27.62 16 14 N -0.72 -17.08 4.59 -454.13 -2.09 -19.17 16 15 C 0.17 3.59 3.23 45.77 0.15 3.74 16 16 H 0.08 1.94 7.66 -2.39 -0.02 1.92 16 17 C -0.13 -2.71 6.84 32.03 0.22 -2.50 16 18 C 0.05 0.76 6.69 87.02 0.58 1.34 16 19 N -0.53 -7.91 4.85 -863.12 -4.18 -12.09 16 20 C 0.05 0.61 5.88 86.75 0.51 1.12 16 21 C -0.11 -1.13 6.06 30.74 0.19 -0.95 16 22 C -0.12 -1.28 5.97 31.06 0.19 -1.09 16 23 C -0.10 -1.46 5.11 30.88 0.16 -1.31 16 24 C 0.06 0.99 2.44 44.33 0.11 1.10 16 25 H 0.07 1.05 7.99 -2.39 -0.02 1.03 16 26 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.04 1.59 7.20 -2.38 -0.02 1.57 16 28 H 0.03 1.47 7.57 -2.39 -0.02 1.45 16 29 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.41 10.52 8.49 -92.70 -0.79 9.74 16 32 H 0.41 7.78 6.68 -92.71 -0.62 7.16 16 33 H 0.06 1.50 7.97 -2.39 -0.02 1.48 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.04 0.41 8.00 -2.39 -0.02 0.39 16 38 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.07 1.03 6.42 -2.39 -0.02 1.02 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -72.28 342.76 -2.34 -74.62 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -0.48 Total: 22.73 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 4.95 Total: 3.32 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -8.63 Total: -117.56 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.06 Total: -27.62 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.50 kcal Total: -72.28 -2.34 -74.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343855037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.819 kcal (2) G-P(sol) polarization free energy of solvation -72.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds