Wall clock time and date at job start Tue Mar 31 2020 05:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00117 * 2 1 4 4 H 1.48503 * 109.46983 * 270.00028 * 3 2 1 5 5 H 1.48497 * 109.47168 * 30.00023 * 3 2 1 6 6 H 1.48498 * 109.47166 * 150.00255 * 3 2 1 7 7 C 1.37875 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00396 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47557 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.34765 * 120.00081 * 179.97438 * 11 10 9 13 13 O 1.21593 * 120.00121 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00321 * 179.97438 * 12 11 10 15 15 C 1.46504 * 120.00460 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.47128 * 180.02562 * 15 14 12 17 17 H 1.09000 * 110.90031 * 302.58171 * 16 15 14 18 18 C 1.55133 * 110.99233 * 66.45016 * 16 15 14 19 19 C 1.54320 * 103.01486 * 153.74476 * 18 16 15 20 20 N 1.47442 * 107.23491 * 337.71667 * 19 18 16 21 21 C 1.46904 * 110.99911 * 236.74024 * 20 19 18 22 22 C 1.52994 * 117.50062 * 246.52906 * 21 20 19 23 23 C 1.53006 * 117.49413 * 177.87070 * 21 20 19 24 24 C 1.47841 * 108.56903 * 359.01247 * 20 19 18 25 25 H 0.96996 * 119.99882 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46822 * 60.00264 * 9 7 2 27 27 H 1.08999 * 109.47060 * 300.00870 * 9 7 2 28 28 H 1.08998 * 109.46779 * 60.00053 * 10 9 7 29 29 H 1.09005 * 109.46975 * 300.00668 * 10 9 7 30 30 H 0.97002 * 120.00052 * 0.02562 * 11 10 9 31 31 H 0.97002 * 119.99813 * 0.02562 * 14 12 11 32 32 H 1.08998 * 109.46891 * 60.00283 * 15 14 12 33 33 H 1.09000 * 109.46878 * 300.00473 * 15 14 12 34 34 H 1.09002 * 110.70747 * 35.36975 * 18 16 15 35 35 H 1.08994 * 110.70849 * 272.12920 * 18 16 15 36 36 H 1.08997 * 109.89103 * 97.12817 * 19 18 16 37 37 H 1.09004 * 109.88663 * 218.31169 * 19 18 16 38 38 H 1.08995 * 115.55266 * 32.20830 * 21 20 19 39 39 H 1.09008 * 117.50040 * 0.02562 * 22 21 20 40 40 H 1.08999 * 117.50072 * 145.01857 * 22 21 20 41 41 H 1.09003 * 117.49753 * 214.97939 * 23 21 20 42 42 H 1.08993 * 117.49817 * 359.97438 * 23 21 20 43 43 H 1.08997 * 110.37851 * 142.92390 * 24 20 19 44 44 H 1.09007 * 110.37159 * 265.15596 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5127 -4.9309 -0.0012 12 6 2.1865 -6.0980 -0.0018 13 8 3.4024 -6.0980 -0.0014 14 7 1.5127 -7.2652 -0.0018 15 6 2.2451 -8.5340 -0.0019 16 6 1.2508 -9.6969 -0.0026 17 1 0.5811 -9.6363 0.8552 18 6 0.4503 -9.7428 -1.3307 19 6 0.0629 -11.2317 -1.4516 20 7 1.0191 -11.9998 -0.6333 21 6 1.7034 -13.0186 -1.4407 22 6 1.4165 -14.4862 -1.1175 23 6 2.7684 -13.8710 -0.7477 24 6 1.9893 -11.0583 -0.0349 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6044 0.8895 29 1 2.8720 -3.6043 -0.8905 30 1 0.5427 -4.9309 -0.0019 31 1 0.5427 -7.2652 -0.0018 32 1 2.8718 -8.5918 0.8880 33 1 2.8718 -8.5916 -0.8919 34 1 1.0768 -9.4384 -2.1691 35 1 -0.4397 -9.1170 -1.2660 36 1 -0.9499 -11.3829 -1.0781 37 1 0.1276 -11.5483 -2.4926 38 1 1.8700 -12.7566 -2.4855 39 1 0.7195 -14.6959 -0.3060 40 1 1.3944 -15.1898 -1.9497 41 1 3.6354 -14.1701 -1.3368 42 1 2.9616 -13.6755 0.3070 43 1 2.2497 -11.3728 0.9756 44 1 2.8844 -10.9917 -0.6534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343979351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:01 Heat of formation + Delta-G solvation = -13.365277 kcal Electronic energy + Delta-G solvation = -21272.675383 eV Core-core repulsion = 18032.147274 eV Total energy + Delta-G solvation = -3240.528109 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.02929 -39.27882 -36.77914 -34.98102 -34.25219 -32.81749 -30.98597 -29.59697 -29.24171 -25.72415 -24.25497 -22.72997 -22.56267 -21.11537 -20.80164 -20.51695 -20.31456 -17.97017 -16.95086 -16.54318 -16.30321 -15.47965 -15.42404 -14.99213 -14.50442 -14.28145 -14.01372 -13.72638 -13.68237 -13.45322 -13.24152 -12.79256 -12.28675 -12.21646 -12.10241 -11.88114 -11.47620 -11.19148 -11.17163 -11.07061 -11.00627 -10.74827 -10.62201 -10.46292 -10.30148 -9.93077 -9.54572 -9.25098 -9.00347 -8.69571 -8.47212 -8.22664 -6.08289 -4.10774 3.01603 3.30379 3.35166 3.36602 3.41342 3.49720 3.61790 4.26719 4.27084 4.41982 4.44475 4.56014 4.64134 4.74790 4.88010 4.94852 5.05688 5.14282 5.17920 5.28818 5.29356 5.40049 5.42682 5.52168 5.60082 5.61257 5.73926 5.80804 5.81482 5.99233 6.31464 6.41502 6.52728 6.61124 6.75047 6.79458 7.02164 7.25616 7.58254 7.64656 7.91069 8.27301 8.45640 8.94149 9.02157 9.53866 11.03388 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.057093 B = 0.002202 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.313733 B =12709.904972 C =13023.774182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.698 3.302 13 O -0.599 6.599 14 N -0.752 5.752 15 C 0.152 3.848 16 C -0.110 4.110 17 H 0.092 0.908 18 C -0.139 4.139 19 C 0.045 3.955 20 N -0.503 5.503 21 C -0.002 4.002 22 C -0.163 4.163 23 C -0.176 4.176 24 C 0.054 3.946 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.393 0.607 31 H 0.394 0.606 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.087 -27.284 -2.251 27.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.392 5.392 12 C 0.397 3.603 13 O -0.478 6.478 14 N -0.409 5.409 15 C 0.027 3.973 16 C -0.129 4.129 17 H 0.110 0.890 18 C -0.177 4.177 19 C -0.082 4.082 20 N -0.226 5.226 21 C -0.111 4.111 22 C -0.201 4.201 23 C -0.213 4.213 24 C -0.073 4.073 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.226 0.774 31 H 0.227 0.773 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.347 -27.398 -1.858 27.463 hybrid contribution -0.144 1.334 -0.694 1.510 sum -0.491 -26.065 -2.552 26.194 Atomic orbital electron populations 1.69957 1.06080 1.26833 1.50490 1.25001 0.94907 0.99416 0.95039 0.86504 0.79842 0.82981 0.78176 1.20584 1.21189 1.19720 1.21058 0.93279 0.90367 1.51191 0.92216 1.19327 0.94262 0.91094 0.97796 1.21586 0.95633 0.80437 1.00624 1.45528 1.09824 1.05344 1.78536 1.16065 0.85636 0.80505 0.78045 1.90889 1.11812 1.86703 1.58421 1.45077 1.09400 1.04638 1.81807 1.20992 0.93356 0.80705 1.02236 1.22562 0.97494 0.93957 0.98915 0.88994 1.22890 1.00740 0.96610 0.97467 1.22838 0.97110 0.91821 0.96447 1.63374 1.15105 1.13181 1.30980 1.22682 1.01803 0.90832 0.95782 1.23063 0.98981 0.94537 1.03550 1.23064 0.92807 1.03701 1.01750 1.22938 0.94247 0.89779 1.00364 0.92880 0.95991 0.95961 0.92789 0.92835 0.77419 0.77295 0.91578 0.91885 0.90981 0.90356 0.90238 0.92485 0.89175 0.88172 0.88872 0.88697 0.88284 0.89910 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.05 5.61 -4.04 -0.02 3.03 16 11 N -0.74 -13.21 5.56 -65.23 -0.36 -13.58 16 12 C 0.70 12.34 8.57 -86.93 -0.74 11.60 16 13 O -0.60 -13.12 16.34 5.28 0.09 -13.03 16 14 N -0.75 -9.41 5.41 -65.22 -0.35 -9.76 16 15 C 0.15 1.66 5.12 -4.04 -0.02 1.64 16 16 C -0.11 -0.88 3.10 -88.48 -0.27 -1.16 16 17 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 18 C -0.14 -1.04 6.12 -24.91 -0.15 -1.19 16 19 C 0.05 0.34 6.90 -2.84 -0.02 0.32 16 20 N -0.50 -4.09 5.33 -223.29 -1.19 -5.28 16 21 C 0.00 -0.01 4.98 -67.71 -0.34 -0.35 16 22 C -0.16 -1.07 10.46 -26.70 -0.28 -1.34 16 23 C -0.18 -1.15 9.89 -26.69 -0.26 -1.41 16 24 C 0.05 0.43 5.61 -2.30 -0.01 0.42 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.02 0.57 8.14 -51.92 -0.42 0.14 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.39 6.00 8.49 -40.82 -0.35 5.65 16 31 H 0.39 3.85 8.35 -40.82 -0.34 3.51 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.76 8.11 -51.93 -0.42 0.33 16 34 H 0.07 0.60 8.01 -51.93 -0.42 0.19 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.40 7.33 -51.93 -0.38 0.02 16 38 H 0.09 0.65 7.73 -51.93 -0.40 0.25 16 39 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.67 8.04 -51.93 -0.42 0.26 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.45 7.71 -51.93 -0.40 0.05 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -32.45 360.33 -11.09 -43.54 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.74 Total: 3.28 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.68 Total: -1.60 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -1.17 Total: -54.09 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.45 -11.09 -43.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343979351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.174 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds