Wall clock time and date at job start Tue Mar 31 2020 05:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99866 * 2 1 4 4 H 1.48497 * 109.46940 * 269.99639 * 3 2 1 5 5 H 1.48504 * 109.46855 * 29.99976 * 3 2 1 6 6 H 1.48501 * 109.46646 * 149.99754 * 3 2 1 7 7 C 1.37870 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99486 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00281 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47316 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47245 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00387 * 179.97438 * 11 10 9 13 13 O 1.21597 * 119.99356 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00630 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00443 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47512 * 179.97438 * 15 14 12 17 17 H 1.09001 * 110.87195 * 57.39020 * 16 15 14 18 18 C 1.55141 * 110.99197 * 293.54876 * 16 15 14 19 19 C 1.54317 * 103.01820 * 206.24905 * 18 16 15 20 20 N 1.47439 * 107.23225 * 22.28695 * 19 18 16 21 21 C 1.46898 * 111.00364 * 123.25623 * 20 19 18 22 22 C 1.53002 * 117.49965 * 59.86744 * 21 20 19 23 23 C 1.53000 * 60.02940 * 107.50426 * 22 21 20 24 24 C 1.47845 * 108.57043 * 0.98564 * 20 19 18 25 25 H 0.97007 * 119.99961 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47285 * 59.99992 * 9 7 2 27 27 H 1.09004 * 109.46836 * 299.99797 * 9 7 2 28 28 H 1.08998 * 109.47141 * 59.99670 * 10 9 7 29 29 H 1.09008 * 109.47112 * 299.99963 * 10 9 7 30 30 H 0.97002 * 119.99947 * 0.02562 * 11 10 9 31 31 H 0.97004 * 119.99900 * 359.97438 * 14 12 11 32 32 H 1.09000 * 109.46742 * 59.99639 * 15 14 12 33 33 H 1.09004 * 109.47130 * 299.99939 * 15 14 12 34 34 H 1.09003 * 110.70711 * 87.86558 * 18 16 15 35 35 H 1.09003 * 110.70506 * 324.63594 * 18 16 15 36 36 H 1.08994 * 109.88772 * 262.87523 * 19 18 16 37 37 H 1.09007 * 109.88188 * 141.68774 * 19 18 16 38 38 H 1.08999 * 115.55953 * 274.18466 * 21 20 19 39 39 H 1.09002 * 117.49918 * 0.02562 * 22 21 20 40 40 H 1.09002 * 117.49754 * 215.00609 * 22 21 20 41 41 H 1.09008 * 117.49673 * 107.47884 * 23 22 21 42 42 H 1.08999 * 117.49942 * 252.47315 * 23 22 21 43 43 H 1.08993 * 110.37597 * 94.73367 * 24 20 19 44 44 H 1.09000 * 110.37567 * 217.08146 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 7 5.4865 -2.6365 0.0009 12 6 6.1605 -3.8037 0.0014 13 8 5.5524 -4.8567 0.0022 14 7 7.5082 -3.8037 0.0018 15 6 8.2407 -5.0724 0.0028 16 6 9.7449 -4.7929 0.0026 17 1 10.0265 -4.1816 0.8600 18 6 10.1856 -4.1235 -1.3258 19 6 11.6687 -4.5324 -1.4459 20 7 11.8554 -5.7440 -0.6268 21 6 12.3958 -6.8466 -1.4331 22 6 13.7509 -6.6292 -2.1094 23 6 13.6394 -7.5658 -0.9047 24 6 10.5547 -6.1131 -0.0286 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8752 -0.6804 -0.8889 28 1 3.6585 -3.1501 -0.8892 29 1 3.6578 -3.1505 0.8908 30 1 5.9715 -1.7964 0.0014 31 1 7.9932 -2.9637 0.0015 32 1 7.9776 -5.6445 -0.8869 33 1 7.9771 -5.6435 0.8931 34 1 10.0886 -3.0397 -1.2620 35 1 9.6089 -4.5143 -2.1642 36 1 12.3058 -3.7306 -1.0727 37 1 11.9109 -4.7475 -2.4867 38 1 11.6573 -7.4448 -1.9668 39 1 14.2417 -5.6681 -1.9556 40 1 13.9037 -7.0841 -3.0881 41 1 13.7186 -8.6369 -1.0909 42 1 14.0571 -7.2209 0.0412 43 1 10.0489 -6.8539 -0.6477 44 1 10.6966 -6.4951 0.9823 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343979352.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:03 Heat of formation + Delta-G solvation = -9.212107 kcal Electronic energy + Delta-G solvation = -21304.615003 eV Core-core repulsion = 18064.266989 eV Total energy + Delta-G solvation = -3240.348014 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.08088 -39.35195 -36.84981 -35.09925 -34.30957 -32.77765 -31.04412 -29.89998 -29.55010 -25.76601 -24.20989 -23.08083 -22.46511 -21.06419 -20.81199 -20.53347 -20.20319 -18.00192 -16.91905 -16.89093 -16.61753 -15.57373 -15.47326 -15.17157 -14.38547 -14.20168 -14.10953 -13.81179 -13.72011 -13.60473 -13.14095 -12.88361 -12.59547 -12.35108 -12.19936 -11.89012 -11.54726 -11.46980 -11.27762 -11.16383 -11.09896 -10.78861 -10.45318 -10.37621 -10.26182 -9.97076 -9.76130 -9.31503 -9.07509 -8.74780 -8.61895 -8.36969 -6.10092 -4.10028 2.93731 3.25486 3.30454 3.33021 3.34411 3.46165 3.53519 4.21476 4.24168 4.38290 4.40825 4.52054 4.60606 4.63952 4.83559 4.91163 5.00529 5.07757 5.16989 5.22762 5.25175 5.37652 5.39184 5.47734 5.55064 5.57576 5.68320 5.76827 5.78283 5.94124 6.09790 6.26168 6.49514 6.52979 6.60658 6.71481 6.83108 7.05272 7.25811 7.30788 7.68521 8.30751 8.47002 8.91565 8.95234 9.49998 11.02926 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.044517 B = 0.002338 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.823438 B =11970.896734 C =12393.139859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.148 3.852 11 N -0.742 5.742 12 C 0.699 3.301 13 O -0.595 6.595 14 N -0.752 5.752 15 C 0.152 3.848 16 C -0.110 4.110 17 H 0.092 0.908 18 C -0.138 4.138 19 C 0.043 3.957 20 N -0.503 5.503 21 C -0.002 4.002 22 C -0.175 4.175 23 C -0.163 4.163 24 C 0.055 3.945 25 H 0.264 0.736 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.391 0.609 31 H 0.393 0.607 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.054 0.946 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.278 -9.860 -2.590 31.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.025 3.975 11 N -0.396 5.396 12 C 0.398 3.602 13 O -0.474 6.474 14 N -0.409 5.409 15 C 0.026 3.974 16 C -0.129 4.129 17 H 0.110 0.890 18 C -0.177 4.177 19 C -0.084 4.084 20 N -0.226 5.226 21 C -0.111 4.111 22 C -0.212 4.212 23 C -0.201 4.201 24 C -0.073 4.073 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.224 0.776 31 H 0.227 0.773 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.072 0.928 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 28.869 -10.636 -2.201 30.845 hybrid contribution 0.223 1.572 -0.684 1.729 sum 29.092 -9.064 -2.885 30.607 Atomic orbital electron populations 1.69909 1.06272 1.27013 1.50491 1.25006 0.94777 0.99144 0.94427 0.86742 0.80249 0.83550 0.78453 1.20267 1.21292 1.19113 1.20921 0.88656 0.94910 1.51532 0.90583 1.19795 0.97927 0.91450 0.96769 1.21371 0.74785 0.99816 1.01485 1.45519 1.08927 1.06231 1.78942 1.16034 0.81254 0.84831 0.78051 1.90909 1.67756 1.30608 1.58102 1.45070 1.04991 1.09052 1.81764 1.21009 0.88436 0.85572 1.02337 1.22573 0.94024 0.97425 0.98910 0.88998 1.22882 0.95900 1.01431 0.97457 1.22814 0.96087 0.92721 0.96758 1.63374 1.25516 1.03042 1.30701 1.22687 0.90984 0.97108 1.00368 1.23042 0.99148 1.01890 0.97168 1.23061 1.00710 0.97682 0.98601 1.22979 0.87668 0.96003 1.00613 0.92573 0.96027 0.96494 0.92201 0.92143 0.77614 0.77339 0.91818 0.91476 0.90459 0.90966 0.90469 0.92290 0.89200 0.88367 0.88729 0.88805 0.88144 0.92816 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.91 16 9 C -0.02 -0.50 4.15 -27.89 -0.12 -0.61 16 10 C 0.15 3.09 5.61 -4.05 -0.02 3.07 16 11 N -0.74 -12.44 5.56 -65.23 -0.36 -12.81 16 12 C 0.70 11.81 8.57 -86.92 -0.74 11.06 16 13 O -0.60 -12.69 16.34 5.28 0.09 -12.60 16 14 N -0.75 -8.86 5.41 -65.22 -0.35 -9.21 16 15 C 0.15 1.57 5.12 -4.04 -0.02 1.55 16 16 C -0.11 -0.83 3.10 -88.48 -0.27 -1.10 16 17 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.14 -0.98 6.12 -24.91 -0.15 -1.13 16 19 C 0.04 0.31 6.57 -2.84 -0.02 0.29 16 20 N -0.50 -3.92 5.33 -223.26 -1.19 -5.11 16 21 C 0.00 -0.02 5.00 -67.68 -0.34 -0.36 16 22 C -0.17 -1.06 9.64 -26.73 -0.26 -1.32 16 23 C -0.16 -1.03 10.46 -26.70 -0.28 -1.31 16 24 C 0.06 0.42 6.20 -2.30 -0.01 0.41 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 27 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.06 1.34 8.14 -51.92 -0.42 0.91 16 30 H 0.39 5.37 8.49 -40.82 -0.35 5.02 16 31 H 0.39 3.52 8.35 -40.82 -0.34 3.17 16 32 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.57 8.01 -51.93 -0.42 0.16 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.41 7.24 -51.92 -0.38 0.03 16 38 H 0.09 0.64 7.75 -51.93 -0.40 0.24 16 39 H 0.10 0.61 8.12 -51.93 -0.42 0.19 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.41 7.46 -51.93 -0.39 0.03 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -33.17 356.51 -10.70 -43.88 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.69 Total: 3.35 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -2.67 Total: -2.63 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -1.13 Total: -53.78 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.17 -10.70 -43.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343979352.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.664 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds