Wall clock time and date at job start Tue Mar 31 2020 05:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99866 * 2 1 4 4 H 1.48497 * 109.46940 * 269.99639 * 3 2 1 5 5 H 1.48504 * 109.46855 * 29.99976 * 3 2 1 6 6 H 1.48501 * 109.46646 * 149.99754 * 3 2 1 7 7 C 1.37870 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99486 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00281 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47316 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47245 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00387 * 179.97438 * 11 10 9 13 13 O 1.21597 * 119.99356 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00630 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00443 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47512 * 179.97438 * 15 14 12 17 17 H 1.09001 * 110.87195 * 57.39020 * 16 15 14 18 18 C 1.55141 * 110.99197 * 293.54876 * 16 15 14 19 19 C 1.54317 * 103.01820 * 206.24905 * 18 16 15 20 20 N 1.47439 * 107.23225 * 22.28695 * 19 18 16 21 21 C 1.46898 * 111.00364 * 123.25623 * 20 19 18 22 22 C 1.53002 * 117.49965 * 59.86744 * 21 20 19 23 23 C 1.53000 * 60.02940 * 107.50426 * 22 21 20 24 24 C 1.47845 * 108.57043 * 0.98564 * 20 19 18 25 25 H 0.97007 * 119.99961 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47285 * 59.99992 * 9 7 2 27 27 H 1.09004 * 109.46836 * 299.99797 * 9 7 2 28 28 H 1.08998 * 109.47141 * 59.99670 * 10 9 7 29 29 H 1.09008 * 109.47112 * 299.99963 * 10 9 7 30 30 H 0.97002 * 119.99947 * 0.02562 * 11 10 9 31 31 H 0.97004 * 119.99900 * 359.97438 * 14 12 11 32 32 H 1.09000 * 109.46742 * 59.99639 * 15 14 12 33 33 H 1.09004 * 109.47130 * 299.99939 * 15 14 12 34 34 H 1.09003 * 110.70711 * 87.86558 * 18 16 15 35 35 H 1.09003 * 110.70506 * 324.63594 * 18 16 15 36 36 H 1.08994 * 109.88772 * 262.87523 * 19 18 16 37 37 H 1.09007 * 109.88188 * 141.68774 * 19 18 16 38 38 H 1.08999 * 115.55953 * 274.18466 * 21 20 19 39 39 H 1.09002 * 117.49918 * 0.02562 * 22 21 20 40 40 H 1.09002 * 117.49754 * 215.00609 * 22 21 20 41 41 H 1.09008 * 117.49673 * 107.47884 * 23 22 21 42 42 H 1.08999 * 117.49942 * 252.47315 * 23 22 21 43 43 H 1.08993 * 110.37597 * 94.73367 * 24 20 19 44 44 H 1.09000 * 110.37567 * 217.08146 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 7 5.4865 -2.6365 0.0009 12 6 6.1605 -3.8037 0.0014 13 8 5.5524 -4.8567 0.0022 14 7 7.5082 -3.8037 0.0018 15 6 8.2407 -5.0724 0.0028 16 6 9.7449 -4.7929 0.0026 17 1 10.0265 -4.1816 0.8600 18 6 10.1856 -4.1235 -1.3258 19 6 11.6687 -4.5324 -1.4459 20 7 11.8554 -5.7440 -0.6268 21 6 12.3958 -6.8466 -1.4331 22 6 13.7509 -6.6292 -2.1094 23 6 13.6394 -7.5658 -0.9047 24 6 10.5547 -6.1131 -0.0286 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8752 -0.6804 -0.8889 28 1 3.6585 -3.1501 -0.8892 29 1 3.6578 -3.1505 0.8908 30 1 5.9715 -1.7964 0.0014 31 1 7.9932 -2.9637 0.0015 32 1 7.9776 -5.6445 -0.8869 33 1 7.9771 -5.6435 0.8931 34 1 10.0886 -3.0397 -1.2620 35 1 9.6089 -4.5143 -2.1642 36 1 12.3058 -3.7306 -1.0727 37 1 11.9109 -4.7475 -2.4867 38 1 11.6573 -7.4448 -1.9668 39 1 14.2417 -5.6681 -1.9556 40 1 13.9037 -7.0841 -3.0881 41 1 13.7186 -8.6369 -1.0909 42 1 14.0571 -7.2209 0.0412 43 1 10.0489 -6.8539 -0.6477 44 1 10.6966 -6.4951 0.9823 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343979352.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:03 Heat of formation + Delta-G solvation = -34.003026 kcal Electronic energy + Delta-G solvation = -21305.690018 eV Core-core repulsion = 18064.266989 eV Total energy + Delta-G solvation = -3241.423029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.12320 -40.24622 -37.55146 -36.62271 -35.42387 -34.76230 -32.33058 -31.11795 -30.28322 -27.15517 -25.59508 -23.60875 -22.98415 -22.65008 -22.04818 -21.54066 -20.82090 -19.33719 -18.87498 -17.58822 -17.43656 -16.82452 -16.52756 -16.24982 -15.89112 -15.39846 -15.24538 -15.18696 -14.63355 -14.59302 -14.49847 -14.04535 -13.56622 -13.33413 -13.10077 -12.98582 -12.78195 -12.36901 -12.18955 -12.15654 -12.13750 -11.89201 -11.74916 -11.72231 -11.52969 -11.32669 -11.25790 -10.95236 -10.77786 -10.36659 -9.72764 -9.31628 -8.28825 -6.36167 1.39982 1.42981 1.54211 1.73345 2.16881 2.38004 2.78940 2.90289 3.06110 3.33236 3.64208 3.71875 3.78002 4.01747 4.11989 4.27351 4.32600 4.34821 4.37352 4.43553 4.46420 4.61743 4.68528 4.76244 4.77037 4.80060 4.87331 4.96130 5.00288 5.07396 5.16548 5.18188 5.30508 5.31738 5.42885 5.45947 5.49829 5.67791 5.93824 6.04903 6.15282 6.24400 6.71218 7.15460 7.28211 7.61058 8.87926 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.044517 B = 0.002338 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.823438 B =11970.896734 C =12393.139859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.539 4.539 8 H 0.028 0.972 9 C -0.011 4.011 10 C 0.164 3.836 11 N -0.731 5.731 12 C 0.696 3.304 13 O -0.643 6.643 14 N -0.728 5.728 15 C 0.153 3.847 16 C -0.096 4.096 17 H 0.102 0.898 18 C -0.135 4.135 19 C 0.044 3.956 20 N -0.509 5.509 21 C -0.016 4.016 22 C -0.168 4.168 23 C -0.162 4.162 24 C 0.055 3.945 25 H 0.268 0.732 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.411 0.589 31 H 0.412 0.588 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.568 -8.102 -2.691 33.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.578 4.578 8 H 0.046 0.954 9 C -0.049 4.049 10 C 0.039 3.961 11 N -0.387 5.387 12 C 0.396 3.604 13 O -0.526 6.526 14 N -0.385 5.385 15 C 0.029 3.971 16 C -0.115 4.115 17 H 0.121 0.879 18 C -0.173 4.173 19 C -0.083 4.083 20 N -0.233 5.233 21 C -0.125 4.125 22 C -0.205 4.205 23 C -0.200 4.200 24 C -0.073 4.073 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.247 0.753 31 H 0.249 0.751 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.067 0.933 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 32.245 -8.863 -2.304 33.520 hybrid contribution -0.823 0.896 -0.660 1.384 sum 31.422 -7.967 -2.964 32.552 Atomic orbital electron populations 1.70084 1.08598 1.28408 1.51997 1.26108 0.95726 1.03947 0.93701 0.85511 0.79668 0.77195 0.79308 1.18992 1.21335 1.15865 1.21258 0.91635 0.93363 1.51516 0.95374 1.19640 0.94309 0.92833 0.98112 1.20867 0.77265 0.98244 0.99676 1.45106 1.07233 1.07343 1.78992 1.16190 0.82597 0.83899 0.77734 1.90885 1.69184 1.32321 1.60168 1.44855 1.03125 1.10644 1.79852 1.21067 0.90043 0.84655 1.01382 1.22438 0.91625 0.97704 0.99750 0.87949 1.22867 0.95735 1.02167 0.96548 1.22830 0.96058 0.92587 0.96785 1.63397 1.25322 1.03488 1.31133 1.22752 0.91378 0.97373 1.01038 1.23082 0.98017 1.01826 0.97571 1.23099 1.00015 0.98330 0.98538 1.22967 0.87761 0.95883 1.00678 0.92356 0.94399 0.94552 0.94185 0.94160 0.75321 0.75123 0.92998 0.92367 0.89037 0.91919 0.89914 0.92224 0.89495 0.88467 0.87674 0.87830 0.88672 0.93307 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.46 13.96 21.44 0.30 -59.16 16 2 C 0.00 0.12 5.47 84.65 0.46 0.59 16 3 Si 0.96 42.15 27.47 68.60 1.88 44.03 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.24 -9.12 6.54 99.48 0.65 -8.47 16 7 C -0.54 -30.94 9.66 25.60 0.25 -30.69 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 9 C -0.01 -0.49 4.15 29.85 0.12 -0.37 16 10 C 0.16 6.82 5.61 86.38 0.48 7.30 16 11 N -0.73 -23.15 5.56 -478.53 -2.66 -25.81 16 12 C 0.70 22.71 8.57 179.06 1.53 24.24 16 13 O -0.64 -27.64 16.34 -4.02 -0.07 -27.71 16 14 N -0.73 -15.59 5.41 -478.53 -2.59 -18.18 16 15 C 0.15 2.97 5.12 86.38 0.44 3.41 16 16 C -0.10 -1.25 3.10 -9.41 -0.03 -1.28 16 17 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 18 C -0.13 -1.58 6.12 31.77 0.19 -1.39 16 19 C 0.04 0.53 6.57 86.65 0.57 1.10 16 20 N -0.51 -7.14 5.33 -860.26 -4.58 -11.72 16 21 C -0.02 -0.21 5.00 44.94 0.22 0.01 16 22 C -0.17 -1.76 9.64 30.60 0.29 -1.47 16 23 C -0.16 -1.83 10.46 30.62 0.32 -1.51 16 24 C 0.06 0.77 6.20 86.77 0.54 1.31 16 25 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 26 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 27 H 0.04 1.49 7.57 -2.39 -0.02 1.47 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.41 9.81 8.49 -92.71 -0.79 9.03 16 31 H 0.41 5.93 8.35 -92.71 -0.77 5.16 16 32 H 0.05 1.16 8.11 -2.39 -0.02 1.14 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.88 8.01 -2.39 -0.02 0.86 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 0.71 7.24 -2.38 -0.02 0.70 16 38 H 0.09 1.18 7.75 -2.39 -0.02 1.16 16 39 H 0.10 1.05 8.12 -2.39 -0.02 1.03 16 40 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.05 0.72 7.46 -2.39 -0.02 0.71 16 44 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -73.89 356.51 -2.94 -76.83 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -0.63 Total: 20.45 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 5.41 Total: 1.27 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -9.53 Total: -114.87 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.07 Total: -27.71 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.88 Total: 44.03 kcal Total: -73.89 -2.94 -76.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343979352.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.823 kcal (2) G-P(sol) polarization free energy of solvation -73.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds