Wall clock time and date at job start Tue Mar 31 2020 05:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99675 * 359.72032 * 7 2 1 9 9 C 1.50695 * 119.99721 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.46773 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99765 * 180.02562 * 11 10 9 13 13 O 1.21592 * 120.00301 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99906 * 179.97438 * 12 11 10 15 15 C 1.46506 * 119.99880 * 179.97438 * 14 12 11 16 16 H 1.09000 * 109.24342 * 35.54768 * 15 14 12 17 17 C 1.52817 * 109.25311 * 276.11877 * 15 14 12 18 18 C 1.53626 * 110.71011 * 293.46083 * 17 15 14 19 19 N 1.45670 * 107.79913 * 302.62627 * 18 17 15 20 20 C 1.47096 * 116.52558 * 182.65659 * 19 18 17 21 21 C 1.55189 * 103.52897 * 197.60155 * 20 19 18 22 22 C 1.54992 * 104.92915 * 23.98980 * 21 20 19 23 23 C 1.48719 * 109.33392 * 65.54704 * 19 18 17 24 24 H 1.08992 * 110.91799 * 50.81362 * 23 19 18 25 25 C 1.52247 * 107.51006 * 290.18872 * 23 19 18 26 26 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 28 28 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 29 29 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 30 30 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 31 31 H 0.96999 * 120.00184 * 359.97438 * 11 10 9 32 32 H 0.96999 * 120.00043 * 0.02562 * 14 12 11 33 33 H 1.09005 * 109.22444 * 53.77398 * 17 15 14 34 34 H 1.09001 * 109.22974 * 173.13611 * 17 15 14 35 35 H 1.08994 * 109.79326 * 183.04687 * 18 17 15 36 36 H 1.09003 * 109.84095 * 62.22284 * 18 17 15 37 37 H 1.08996 * 110.61612 * 79.08559 * 20 19 18 38 38 H 1.09011 * 110.74457 * 316.17376 * 20 19 18 39 39 H 1.08996 * 110.34743 * 265.12703 * 21 20 19 40 40 H 1.08996 * 110.35358 * 142.85519 * 21 20 19 41 41 H 1.08998 * 110.48993 * 243.82044 * 22 21 20 42 42 H 1.09006 * 110.48637 * 121.17349 * 22 21 20 43 43 H 1.09005 * 109.83651 * 303.40793 * 25 23 19 44 44 H 1.09002 * 109.89367 * 182.47450 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4865 -2.6366 -0.0009 12 6 6.1604 -3.8038 -0.0014 13 8 5.5524 -4.8569 -0.0013 14 7 7.5081 -3.8038 -0.0018 15 6 8.2406 -5.0726 -0.0017 16 1 7.6949 -5.8026 -0.5996 17 6 8.3599 -5.5855 1.4329 18 6 9.2501 -4.6547 2.2703 19 7 10.5483 -4.5715 1.6148 20 6 11.5771 -3.7694 2.2943 21 6 12.6228 -3.5006 1.1796 22 6 11.8340 -3.6323 -0.1481 23 6 10.3922 -3.9008 0.2967 24 1 9.8475 -2.9623 0.3997 25 6 9.6324 -4.8541 -0.6153 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6801 -0.8911 28 1 3.8752 -0.6805 0.8888 29 1 3.6585 -3.1503 0.8893 30 1 3.6578 -3.1506 -0.8907 31 1 5.9715 -1.7966 -0.0014 32 1 7.9931 -2.9638 -0.0015 33 1 7.3673 -5.6321 1.8811 34 1 8.7953 -6.5847 1.4219 35 1 9.3688 -5.0623 3.2742 36 1 8.8002 -3.6634 2.3254 37 1 12.0249 -4.3331 3.1127 38 1 11.1570 -2.8324 2.6602 39 1 13.4206 -4.2421 1.2216 40 1 13.0328 -2.4956 1.2787 41 1 12.2136 -4.4678 -0.7362 42 1 11.8909 -2.7056 -0.7191 43 1 10.1616 -5.8048 -0.6799 44 1 9.5341 -4.4173 -1.6092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343995978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:52 Heat of formation + Delta-G solvation = -35.025531 kcal Electronic energy + Delta-G solvation = -22421.811660 eV Core-core repulsion = 19180.344291 eV Total energy + Delta-G solvation = -3241.467369 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.70191 -39.24073 -36.10882 -34.75371 -33.22034 -32.75204 -31.71656 -29.97534 -29.12830 -27.30795 -24.78202 -23.31479 -21.95750 -21.21006 -21.11210 -20.71626 -19.29301 -18.10469 -16.86475 -16.35794 -16.04102 -15.62770 -15.33070 -15.02392 -14.39223 -14.33786 -14.02465 -13.96723 -13.54528 -13.27583 -13.02179 -12.78405 -12.66115 -12.59061 -12.04060 -11.69501 -11.47557 -11.46688 -11.33919 -11.20982 -10.86830 -10.79190 -10.58157 -10.36640 -10.24242 -9.97127 -9.72857 -9.31612 -9.05033 -8.69515 -8.62115 -8.36128 -6.10572 -4.10387 3.00682 3.24919 3.32389 3.33736 3.55149 3.66941 4.18500 4.30946 4.37835 4.55391 4.61295 4.71426 4.81833 4.84170 4.98862 5.00966 5.22351 5.22613 5.27271 5.30770 5.46430 5.52387 5.55158 5.64706 5.70778 5.72754 5.80023 5.90351 5.95667 6.07518 6.12526 6.26385 6.58790 6.62034 6.66364 6.84140 6.90934 7.06681 7.25695 7.31970 7.68337 8.32206 8.47014 8.93220 8.95953 9.49622 11.02570 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026068 B = 0.003229 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.863653 B = 8668.897427 C = 9207.138701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.149 3.851 11 N -0.744 5.744 12 C 0.699 3.301 13 O -0.594 6.594 14 N -0.750 5.750 15 C 0.164 3.836 16 H 0.089 0.911 17 C -0.125 4.125 18 C 0.057 3.943 19 N -0.522 5.522 20 C 0.040 3.960 21 C -0.122 4.122 22 C -0.117 4.117 23 C 0.059 3.941 24 H 0.050 0.950 25 C -0.111 4.111 26 H 0.265 0.735 27 H 0.017 0.983 28 H 0.020 0.980 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.390 0.610 32 H 0.389 0.611 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.586 -6.444 1.706 28.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.026 3.974 11 N -0.397 5.397 12 C 0.399 3.601 13 O -0.472 6.472 14 N -0.407 5.407 15 C 0.059 3.941 16 H 0.107 0.893 17 C -0.164 4.164 18 C -0.071 4.071 19 N -0.247 5.247 20 C -0.088 4.088 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.049 4.049 24 H 0.068 0.932 25 C -0.150 4.150 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.222 0.778 32 H 0.223 0.777 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 26.958 -7.849 1.706 28.129 hybrid contribution 0.426 2.639 0.237 2.684 sum 27.384 -5.210 1.943 27.942 Atomic orbital electron populations 1.69907 1.06280 1.27021 1.50507 1.25004 0.94763 0.99126 0.94420 0.86744 0.80225 0.83574 0.78467 1.20241 1.21284 1.19169 1.20929 0.88660 0.94910 1.51516 0.90571 1.19789 0.97921 0.91489 0.96712 1.21359 0.74827 0.99755 1.01450 1.45539 1.08914 1.06247 1.79024 1.16058 0.81360 0.84790 0.77887 1.90900 1.67722 1.30499 1.58092 1.45364 1.04906 1.08966 1.81440 1.20817 0.91325 0.85703 0.96273 0.89270 1.21991 0.99794 0.99286 0.95305 1.21995 0.88353 0.98926 0.97872 1.63964 1.08462 1.48496 1.03737 1.22839 0.93010 0.95865 0.97072 1.22530 0.97819 1.01557 0.94075 1.22168 0.94102 1.01938 0.97301 1.22420 0.95946 0.95536 0.90984 0.93249 1.21821 0.94299 1.00787 0.98056 0.92562 0.96503 0.96130 0.92210 0.92185 0.77760 0.77726 0.90609 0.90491 0.90810 0.94660 0.90270 0.94256 0.90987 0.91489 0.90703 0.91306 0.89318 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 8 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 10 C 0.15 3.11 5.61 -4.04 -0.02 3.09 16 11 N -0.74 -12.53 5.56 -65.22 -0.36 -12.89 16 12 C 0.70 11.77 8.49 -86.92 -0.74 11.03 16 13 O -0.59 -12.45 16.01 5.28 0.08 -12.36 16 14 N -0.75 -9.10 4.64 -58.43 -0.27 -9.37 16 15 C 0.16 1.80 2.73 -67.68 -0.19 1.62 16 16 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 17 C -0.12 -1.35 5.65 -26.50 -0.15 -1.50 16 18 C 0.06 0.55 5.74 -4.16 -0.02 0.53 16 19 N -0.52 -4.58 4.84 -224.50 -1.09 -5.67 16 20 C 0.04 0.30 6.70 -2.56 -0.02 0.29 16 21 C -0.12 -0.76 7.05 -24.52 -0.17 -0.94 16 22 C -0.12 -0.77 6.65 -25.55 -0.17 -0.94 16 23 C 0.06 0.47 2.37 -66.96 -0.16 0.31 16 24 H 0.05 0.41 6.41 -51.93 -0.33 0.08 16 25 C -0.11 -0.92 5.29 -26.77 -0.14 -1.06 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 28 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.39 5.47 8.49 -40.82 -0.35 5.12 16 32 H 0.39 3.85 6.99 -40.82 -0.29 3.57 16 33 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.37 7.81 -51.93 -0.41 -0.03 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.04 0.31 8.14 -51.92 -0.42 -0.12 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.48 8.00 -51.93 -0.42 0.06 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -32.54 342.85 -10.30 -42.84 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -7.60 Total: 3.91 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.33 Total: -1.36 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.95 Total: -54.66 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.54 -10.30 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343995978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.813 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds