Wall clock time and date at job start Tue Mar 31 2020 05:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00376 * 180.02562 * 11 10 9 13 13 O 1.21591 * 119.99538 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00462 * 180.02562 * 12 11 10 15 15 C 1.46490 * 120.00326 * 179.97438 * 14 12 11 16 16 H 1.08996 * 109.24827 * 325.54096 * 15 14 12 17 17 C 1.52823 * 109.24812 * 84.99987 * 15 14 12 18 18 C 1.53644 * 110.64231 * 174.16270 * 17 15 14 19 19 N 1.45526 * 107.85872 * 302.86787 * 18 17 15 20 20 C 1.46341 * 117.22602 * 185.56502 * 19 18 17 21 21 C 1.54796 * 105.96200 * 208.04753 * 20 19 18 22 22 C 1.55335 * 104.99112 * 3.64545 * 21 20 19 23 23 C 1.48662 * 109.72270 * 65.31960 * 19 18 17 24 24 H 1.08999 * 111.11298 * 52.55604 * 23 19 18 25 25 C 1.52362 * 107.34326 * 290.46454 * 23 19 18 26 26 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 30 30 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 31 31 H 0.97004 * 119.99396 * 0.02562 * 11 10 9 32 32 H 0.97004 * 119.99310 * 359.97438 * 14 12 11 33 33 H 1.08999 * 109.24280 * 294.46245 * 17 15 14 34 34 H 1.09001 * 109.24463 * 53.86584 * 17 15 14 35 35 H 1.09004 * 109.77832 * 62.45671 * 18 17 15 36 36 H 1.09002 * 109.78398 * 183.27309 * 18 17 15 37 37 H 1.09009 * 110.15034 * 327.16829 * 20 19 18 38 38 H 1.08995 * 110.15193 * 88.92250 * 20 19 18 39 39 H 1.09003 * 110.34057 * 122.52023 * 21 20 19 40 40 H 1.08993 * 110.33725 * 244.66277 * 21 20 19 41 41 H 1.08996 * 110.90922 * 140.39397 * 22 21 20 42 42 H 1.09001 * 110.90433 * 263.96005 * 22 21 20 43 43 H 1.09007 * 109.83402 * 303.29448 * 25 23 19 44 44 H 1.09000 * 109.83571 * 182.34699 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 2.1864 -6.0981 0.0018 13 8 3.4023 -6.0981 0.0023 14 7 1.5126 -7.2653 0.0018 15 6 2.2450 -8.5339 0.0019 16 1 3.1595 -8.4210 -0.5803 17 6 2.6057 -8.9073 1.4393 18 6 3.2470 -10.3025 1.4919 19 7 2.3104 -11.2467 0.9010 20 6 2.6642 -12.6655 0.9585 21 6 1.9829 -13.3241 -0.2655 22 6 1.3188 -12.1499 -1.0357 23 6 2.1323 -10.9399 -0.5427 24 1 3.0936 -10.8813 -1.0531 25 6 1.3704 -9.6238 -0.6367 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 2.8718 -3.6044 -0.8895 30 1 2.8718 -3.6044 0.8904 31 1 0.5426 -4.9308 0.0011 32 1 0.5425 -7.2652 0.0018 33 1 3.3081 -8.1739 1.8354 34 1 1.7021 -8.9041 2.0489 35 1 4.1778 -10.3022 0.9246 36 1 3.4453 -10.5786 2.5275 37 1 3.7458 -12.7857 0.8961 38 1 2.2890 -13.1090 1.8808 39 1 2.7257 -13.8166 -0.8931 40 1 1.2286 -14.0401 0.0605 41 1 1.4283 -12.2796 -2.1124 42 1 0.2682 -12.0505 -0.7627 43 1 0.4264 -9.7036 -0.0975 44 1 1.1806 -9.3802 -1.6820 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343995980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:56 Heat of formation + Delta-G solvation = -41.941773 kcal Electronic energy + Delta-G solvation = -21941.221903 eV Core-core repulsion = 18699.454624 eV Total energy + Delta-G solvation = -3241.767279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.43879 -39.27589 -36.03949 -34.62014 -33.32974 -32.77333 -31.76504 -29.63772 -28.87242 -27.08130 -24.64394 -23.22667 -21.95723 -21.25377 -20.84283 -20.35898 -20.10562 -17.92620 -16.41851 -16.21754 -16.01896 -15.69000 -15.26808 -14.97116 -14.50959 -14.22662 -14.05772 -13.76571 -13.41360 -13.23689 -12.92939 -12.89834 -12.58866 -12.26776 -11.82879 -11.55273 -11.44207 -11.30601 -11.15286 -11.04633 -10.94983 -10.80546 -10.62796 -10.58578 -10.28778 -9.87471 -9.52549 -9.21961 -8.94301 -8.59420 -8.46440 -8.20609 -6.07454 -4.09779 3.07704 3.29847 3.37423 3.43071 3.64115 3.65985 4.22550 4.34199 4.42099 4.61206 4.67797 4.70197 4.85681 4.96158 5.03308 5.13754 5.22512 5.28863 5.29758 5.31887 5.49960 5.52630 5.53323 5.58346 5.70069 5.75952 5.84741 5.91785 6.05431 6.20581 6.35503 6.43307 6.68598 6.72034 6.81533 6.98198 7.05219 7.31218 7.60362 7.66249 7.92259 8.28877 8.49743 8.95745 9.05983 9.54879 11.04303 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.055549 B = 0.002496 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.934150 B =11215.839870 C =11441.069945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.141 3.859 11 N -0.739 5.739 12 C 0.698 3.302 13 O -0.600 6.600 14 N -0.749 5.749 15 C 0.167 3.833 16 H 0.081 0.919 17 C -0.125 4.125 18 C 0.064 3.936 19 N -0.538 5.538 20 C 0.049 3.951 21 C -0.128 4.128 22 C -0.115 4.115 23 C 0.069 3.931 24 H 0.057 0.943 25 C -0.111 4.111 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.393 0.607 32 H 0.394 0.606 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.568 -26.751 -0.188 26.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.393 5.393 12 C 0.398 3.602 13 O -0.479 6.479 14 N -0.404 5.404 15 C 0.061 3.939 16 H 0.099 0.901 17 C -0.165 4.165 18 C -0.064 4.064 19 N -0.264 5.264 20 C -0.079 4.079 21 C -0.167 4.167 22 C -0.153 4.153 23 C -0.040 4.040 24 H 0.075 0.925 25 C -0.149 4.149 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.226 0.774 32 H 0.227 0.773 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.157 -26.508 0.121 26.533 hybrid contribution 0.272 0.863 -0.284 0.949 sum 1.429 -25.645 -0.164 25.685 Atomic orbital electron populations 1.69967 1.06085 1.26713 1.50605 1.25002 0.94900 0.99420 0.95063 0.86458 0.80184 0.83347 0.77582 1.19576 1.20963 1.20952 1.21099 0.93305 0.90367 1.51021 0.92178 1.19330 0.94271 0.91114 0.97791 1.21570 0.95608 0.80482 1.00566 1.45540 1.09826 1.05353 1.78548 1.16097 0.85681 0.80548 0.77862 1.90877 1.11799 1.86669 1.58523 1.45211 1.09336 1.04485 1.81403 1.20756 0.95467 0.81659 0.96035 0.90057 1.22022 1.01746 0.95252 0.97438 1.21902 0.92994 0.91886 0.99634 1.62789 1.47721 1.02099 1.13751 1.22490 0.98018 0.88303 0.99054 1.22630 0.99861 0.97915 0.96249 1.22364 1.00013 0.93552 0.99352 1.22509 0.98119 0.94715 0.88637 0.92502 1.21787 0.99240 0.92756 1.01129 0.92938 0.95971 0.95991 0.92865 0.92860 0.77422 0.77289 0.90734 0.91065 0.94665 0.90592 0.94419 0.90505 0.91559 0.90964 0.91023 0.90409 0.90217 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.14 3.08 5.61 -4.04 -0.02 3.06 16 11 N -0.74 -13.34 5.56 -65.23 -0.36 -13.70 16 12 C 0.70 12.43 8.53 -86.92 -0.74 11.69 16 13 O -0.60 -13.05 15.99 5.29 0.08 -12.96 16 14 N -0.75 -9.72 5.06 -58.45 -0.30 -10.02 16 15 C 0.17 1.96 2.51 -67.70 -0.17 1.79 16 16 H 0.08 1.14 7.55 -51.93 -0.39 0.75 16 17 C -0.13 -1.44 5.62 -26.49 -0.15 -1.59 16 18 C 0.06 0.63 5.85 -4.23 -0.02 0.61 16 19 N -0.54 -4.88 4.65 -225.06 -1.05 -5.93 16 20 C 0.05 0.37 6.86 -3.18 -0.02 0.35 16 21 C -0.13 -0.80 6.99 -24.55 -0.17 -0.97 16 22 C -0.11 -0.78 6.61 -25.01 -0.17 -0.94 16 23 C 0.07 0.58 2.63 -66.58 -0.18 0.41 16 24 H 0.06 0.52 8.06 -51.93 -0.42 0.10 16 25 C -0.11 -0.99 5.14 -26.73 -0.14 -1.12 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.39 6.09 8.49 -40.82 -0.35 5.74 16 32 H 0.39 4.05 8.62 -40.82 -0.35 3.70 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.04 0.36 8.05 -51.93 -0.42 -0.06 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.04 0.28 8.04 -51.92 -0.42 -0.14 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 43 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 350.20 15.07 5.28 5.28 Total: -1.00 -32.22 350.20 -10.76 -42.98 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.80 Total: 3.30 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.33 Total: 0.10 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.97 Total: -55.23 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.22 -10.76 -42.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343995980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.039 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds